RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 GRAPLQ8TC17 118 aaPredicted RBP20.6■□□□□ 0.89
TRIM28-213ENST00000598355 ATP6V0A2Q9Y487 856 aa20.6■□□□□ 0.89
TRIM28-213ENST00000598355 CASP7P55210 303 aa20.59■□□□□ 0.89
TRIM28-213ENST00000598355 GCKRQ14397 625 aa20.59■□□□□ 0.89
TRIM28-213ENST00000598355 RTL5Q5HYW3 569 aaPredicted RBP20.59■□□□□ 0.89
TRIM28-213ENST00000598355 DDX46Q7L014 1031 aaKnown RBP20.59■□□□□ 0.89
TRIM28-213ENST00000598355 MRPL50Q8N5N7 158 aaKnown RBP20.59■□□□□ 0.89
TRIM28-213ENST00000598355 GPBP1L1Q9HC44 474 aaPredicted RBP20.59■□□□□ 0.89
TRIM28-213ENST00000598355 H7C1W4 665 aa20.58■□□□□ 0.89
TRIM28-213ENST00000598355 PDE8AO60658 829 aa20.58■□□□□ 0.89
TRIM28-213ENST00000598355 BBOX1O75936 387 aa20.58■□□□□ 0.89
TRIM28-213ENST00000598355 ALDH1L2Q3SY69 923 aa20.58■□□□□ 0.89
TRIM28-213ENST00000598355 BEND3Q5T5X7 828 aa20.58■□□□□ 0.89
TRIM28-213ENST00000598355 TMC4Q7Z404 712 aa20.58■□□□□ 0.89
TRIM28-213ENST00000598355 RTL9Q8NET4 1388 aa20.58■□□□□ 0.88
TRIM28-213ENST00000598355 F6X3S4 739 aa20.57■□□□□ 0.88
TRIM28-213ENST00000598355 SSH1Q8WYL5 1049 aa20.57■□□□□ 0.88
TRIM28-213ENST00000598355 PLA2G12BQ9BX93 195 aa20.57■□□□□ 0.88
TRIM28-213ENST00000598355 PTPRCP08575 1304 aa20.56■□□□□ 0.88
TRIM28-213ENST00000598355 SP8Q8IXZ3 490 aa20.56■□□□□ 0.88
TRIM28-213ENST00000598355 A0A1B0GUL6 1792 aa20.56■□□□□ 0.88
TRIM28-213ENST00000598355 KIF3CO14782 793 aa20.55■□□□□ 0.88
TRIM28-213ENST00000598355 BRPF1P55201 1214 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-213ENST00000598355 CTSWP56202 376 aa20.55■□□□□ 0.88
TRIM28-213ENST00000598355 ZNF526Q8TF50 670 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-213ENST00000598355 CELF1Q92879 486 aaKnown RBP20.55■□□□□ 0.88
TRIM28-213ENST00000598355 RTFDC1Q9BY42 306 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-213ENST00000598355 SCN4AP35499 1836 aa20.55■□□□□ 0.88
TRIM28-213ENST00000598355 GLTPD2A6NH11 291 aa20.54■□□□□ 0.88
TRIM28-213ENST00000598355 IARSP41252 1262 aaKnown RBP20.54■□□□□ 0.88
TRIM28-213ENST00000598355 UBE3BQ7Z3V4 1068 aa20.54■□□□□ 0.88
TRIM28-213ENST00000598355 JARID2Q92833 1246 aaPredicted RBP20.54■□□□□ 0.88
TRIM28-213ENST00000598355 ZNF277Q9NRM2 450 aaPredicted RBP20.54■□□□□ 0.88
TRIM28-213ENST00000598355 KDM2BQ8NHM5 1336 aa20.53■□□□□ 0.88
TRIM28-213ENST00000598355 HNRNPUQ00839 825 aaKnown RBP eCLIP20.53■□□□□ 0.88
TRIM28-213ENST00000598355 CCDC152Q4G0S7 254 aa20.53■□□□□ 0.88
TRIM28-213ENST00000598355 ZBED9Q6R2W3 1325 aa20.53■□□□□ 0.88
TRIM28-213ENST00000598355 ALDH1L1O75891 902 aa20.52■□□□□ 0.88
TRIM28-213ENST00000598355 TTLL11Q8NHH1 800 aa20.52■□□□□ 0.88
TRIM28-213ENST00000598355 NMRK2Q9NPI5 230 aa20.52■□□□□ 0.88
TRIM28-213ENST00000598355 VPS33BQ9H267 617 aa20.51■□□□□ 0.87
TRIM28-213ENST00000598355 SEC31BQ9NQW1 1179 aa20.51■□□□□ 0.87
TRIM28-213ENST00000598355 PSME4Q14997 1843 aa20.5■□□□□ 0.87
TRIM28-213ENST00000598355 FZD9O00144 591 aa20.5■□□□□ 0.87
TRIM28-213ENST00000598355 RPS8P62241 208 aaKnown RBP20.5■□□□□ 0.87
TRIM28-213ENST00000598355 BCL2L13Q9BXK5 485 aa20.5■□□□□ 0.87
TRIM28-213ENST00000598355 CSF1RP07333 972 aa20.49■□□□□ 0.87
TRIM28-213ENST00000598355 SMC4Q9NTJ3 1288 aa20.49■□□□□ 0.87
TRIM28-213ENST00000598355 UTYO14607 1347 aa20.49■□□□□ 0.87
TRIM28-213ENST00000598355 GRM8O00222 908 aa20.48■□□□□ 0.87
TRIM28-213ENST00000598355 RARSP54136 660 aaKnown RBP20.48■□□□□ 0.87
TRIM28-213ENST00000598355 C1QTNF8P60827 252 aa20.48■□□□□ 0.87
TRIM28-213ENST00000598355 MPNDQ8N594 471 aa20.48■□□□□ 0.87
TRIM28-213ENST00000598355 SUPT20HQ8NEM7 779 aa20.48■□□□□ 0.87
TRIM28-213ENST00000598355 SRCIN1Q9C0H9 1055 aa20.48■□□□□ 0.87
TRIM28-213ENST00000598355 GREM2Q9H772 168 aa20.48■□□□□ 0.87
TRIM28-213ENST00000598355 ZNF541Q9H0D2 1346 aa20.48■□□□□ 0.87
TRIM28-213ENST00000598355 DPP8Q6V1X1 898 aaPredicted RBP20.47■□□□□ 0.87
TRIM28-213ENST00000598355 TMX4Q9H1E5 349 aaPredicted RBP20.47■□□□□ 0.87
TRIM28-213ENST00000598355 PODXL2Q9NZ53 605 aa20.47■□□□□ 0.87
TRIM28-213ENST00000598355 ADAMTSL1Q8N6G6 1762 aa20.46■□□□□ 0.87
TRIM28-213ENST00000598355 POTECB2RU33 542 aa20.46■□□□□ 0.87
TRIM28-213ENST00000598355 KIAA2012Q0VF49 1180 aa20.46■□□□□ 0.87
TRIM28-213ENST00000598355 DPY19L2Q6NUT2 758 aa20.46■□□□□ 0.87
TRIM28-213ENST00000598355 L3MBTL3Q96JM7 780 aaPredicted RBP20.46■□□□□ 0.87
TRIM28-213ENST00000598355 CDC5LQ99459 802 aaKnown RBP20.46■□□□□ 0.87
TRIM28-213ENST00000598355 SCN9AQ15858 1988 aa20.46■□□□□ 0.87
TRIM28-213ENST00000598355 ZNF646O15015 1829 aaPredicted RBP20.46■□□□□ 0.87
TRIM28-213ENST00000598355 FOXO4P98177 505 aa20.45■□□□□ 0.86
TRIM28-213ENST00000598355 AOC3Q16853 763 aa20.45■□□□□ 0.86
TRIM28-213ENST00000598355 SLC4A10Q6U841 1118 aa20.45■□□□□ 0.86
TRIM28-213ENST00000598355 CCDC85AQ96PX6 553 aaPredicted RBP20.45■□□□□ 0.86
TRIM28-213ENST00000598355 KIF16BQ96L93 1317 aa20.45■□□□□ 0.86
TRIM28-213ENST00000598355 PPIP5K2O43314 1243 aa20.44■□□□□ 0.86
TRIM28-213ENST00000598355 GPSM2P81274 684 aa20.44■□□□□ 0.86
TRIM28-213ENST00000598355 FAM161AQ3B820 660 aa20.44■□□□□ 0.86
TRIM28-213ENST00000598355 ANKRD18AQ8IVF6 992 aa20.44■□□□□ 0.86
TRIM28-213ENST00000598355 LARGE2Q8N3Y3 721 aa20.44■□□□□ 0.86
TRIM28-213ENST00000598355 TOMM70O94826 608 aa20.43■□□□□ 0.86
TRIM28-213ENST00000598355 DDNO94850 711 aaPredicted RBP20.43■□□□□ 0.86
TRIM28-213ENST00000598355 JDP2Q8WYK2 163 aa20.43■□□□□ 0.86
TRIM28-213ENST00000598355 RRAGCQ9HB90 399 aa20.43■□□□□ 0.86
TRIM28-213ENST00000598355 BSDC1Q9NW68 430 aaPredicted RBP20.43■□□□□ 0.86
TRIM28-213ENST00000598355 VEGFAP15692 232 aaPredicted RBP20.42■□□□□ 0.86
TRIM28-213ENST00000598355 ITGA6P23229 1130 aa20.42■□□□□ 0.86
TRIM28-213ENST00000598355 EPHA10Q5JZY3 1008 aa20.42■□□□□ 0.86
TRIM28-213ENST00000598355 KAZALD1Q96I82 304 aa20.42■□□□□ 0.86
TRIM28-213ENST00000598355 POLLQ9UGP5 575 aa20.42■□□□□ 0.86
TRIM28-213ENST00000598355 NBPF7P0C2Y1 421 aaPredicted RBP20.41■□□□□ 0.86
TRIM28-213ENST00000598355 NIM1KQ8IY84 436 aa20.41■□□□□ 0.86
TRIM28-213ENST00000598355 GPC2Q8N158 579 aa20.41■□□□□ 0.86
TRIM28-213ENST00000598355 ARHGAP45Q92619 1136 aa20.41■□□□□ 0.86
TRIM28-213ENST00000598355 C9orf78Q9NZ63 289 aaPredicted RBP20.41■□□□□ 0.86
TRIM28-213ENST00000598355 NOB1Q9ULX3 412 aaKnown RBP20.41■□□□□ 0.86
TRIM28-213ENST00000598355 NSFL1CQ9UNZ2 370 aaKnown RBP20.41■□□□□ 0.86
TRIM28-213ENST00000598355 XDHP47989 1333 aa20.4■□□□□ 0.86
TRIM28-213ENST00000598355 TBC1D16Q8TBP0 767 aa20.4■□□□□ 0.86
TRIM28-213ENST00000598355 RBM46Q8TBY0 533 aaKnown RBP20.4■□□□□ 0.86
TRIM28-213ENST00000598355 RABL6Q3YEC7 729 aaPredicted RBP20.39■□□□□ 0.85
TRIM28-213ENST00000598355 SUCLG2Q96I99 432 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms