RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 PCCAP05165 728 aaPredicted RBP19.56■□□□□ 0.72
TRIM28-203ENST00000593582 G2E3Q7L622 706 aa19.56■□□□□ 0.72
TRIM28-203ENST00000593582 LARGE2Q8N3Y3 721 aa19.56■□□□□ 0.72
TRIM28-203ENST00000593582 WDR90Q96KV7 1748 aa19.56■□□□□ 0.72
TRIM28-203ENST00000593582 LAMB2P55268 1798 aa19.55■□□□□ 0.72
TRIM28-203ENST00000593582 IQCA1LA6NCM1 817 aa19.55■□□□□ 0.72
TRIM28-203ENST00000593582 APLP1P51693 650 aa19.55■□□□□ 0.72
TRIM28-203ENST00000593582 FLIIQ13045 1269 aa19.55■□□□□ 0.72
TRIM28-203ENST00000593582 DPP8Q6V1X1 898 aaPredicted RBP19.55■□□□□ 0.72
TRIM28-203ENST00000593582 SUPT20HQ8NEM7 779 aa19.55■□□□□ 0.72
TRIM28-203ENST00000593582 ZNF541Q9H0D2 1346 aa19.54■□□□□ 0.72
TRIM28-203ENST00000593582 DDX60Q8IY21 1712 aaKnown RBP19.54■□□□□ 0.72
TRIM28-203ENST00000593582 MPNDQ8N594 471 aa19.54■□□□□ 0.72
TRIM28-203ENST00000593582 L3MBTL3Q96JM7 780 aaPredicted RBP19.54■□□□□ 0.72
TRIM28-203ENST00000593582 VPS33BQ9H267 617 aa19.54■□□□□ 0.72
TRIM28-203ENST00000593582 PPIP5K2O43314 1243 aa19.53■□□□□ 0.72
TRIM28-203ENST00000593582 IGKV5-2P06315 115 aa19.53■□□□□ 0.72
TRIM28-203ENST00000593582 EIF6P56537 245 aaKnown RBP19.53■□□□□ 0.72
TRIM28-203ENST00000593582 FKBP5Q13451 457 aaPredicted RBP19.53■□□□□ 0.72
TRIM28-203ENST00000593582 RTFDC1Q9BY42 306 aaPredicted RBP19.53■□□□□ 0.72
TRIM28-203ENST00000593582 PDE8AO60658 829 aa19.52■□□□□ 0.72
TRIM28-203ENST00000593582 CCDC152Q4G0S7 254 aa19.52■□□□□ 0.72
TRIM28-203ENST00000593582 NIM1KQ8IY84 436 aa19.52■□□□□ 0.72
TRIM28-203ENST00000593582 GPC2Q8N158 579 aa19.52■□□□□ 0.72
TRIM28-203ENST00000593582 JARID2Q92833 1246 aaPredicted RBP19.52■□□□□ 0.72
TRIM28-203ENST00000593582 CELF1Q92879 486 aaKnown RBP19.52■□□□□ 0.72
TRIM28-203ENST00000593582 ZNF521Q96K83 1311 aa19.51■□□□□ 0.71
TRIM28-203ENST00000593582 RPS8P62241 208 aaKnown RBP19.51■□□□□ 0.71
TRIM28-203ENST00000593582 AOC3Q16853 763 aa19.51■□□□□ 0.71
TRIM28-203ENST00000593582 CWF19L2Q2TBE0 894 aaKnown RBP19.51■□□□□ 0.71
TRIM28-203ENST00000593582 NEURL1BA8MQ27 555 aa19.5■□□□□ 0.71
TRIM28-203ENST00000593582 CCER2I3L3R5 266 aa19.5■□□□□ 0.71
TRIM28-203ENST00000593582 CDHR2Q9BYE9 1310 aa19.5■□□□□ 0.71
TRIM28-203ENST00000593582 DNAAF4Q8WXU2 420 aa19.49■□□□□ 0.71
TRIM28-203ENST00000593582 TAF1DQ9H5J8 278 aaPredicted RBP19.49■□□□□ 0.71
TRIM28-203ENST00000593582 HACL1Q9UJ83 578 aa19.49■□□□□ 0.71
TRIM28-203ENST00000593582 NSFL1CQ9UNZ2 370 aaKnown RBP19.49■□□□□ 0.71
TRIM28-203ENST00000593582 GJA3Q9Y6H8 435 aa19.49■□□□□ 0.71
TRIM28-203ENST00000593582 COL4A5P29400 1685 aa19.49■□□□□ 0.71
TRIM28-203ENST00000593582 KIAA2012Q0VF49 1180 aa19.48■□□□□ 0.71
TRIM28-203ENST00000593582 SEC31BQ9NQW1 1179 aa19.48■□□□□ 0.71
TRIM28-203ENST00000593582 ZNRF3Q9ULT6 936 aa19.48■□□□□ 0.71
TRIM28-203ENST00000593582 E9PSI1 815 aa19.47■□□□□ 0.71
TRIM28-203ENST00000593582 CTSWP56202 376 aa19.47■□□□□ 0.71
TRIM28-203ENST00000593582 CHADLQ6NUI6 762 aa19.47■□□□□ 0.71
TRIM28-203ENST00000593582 LINS1Q8NG48 757 aa19.47■□□□□ 0.71
TRIM28-203ENST00000593582 CCDC85AQ96PX6 553 aaPredicted RBP19.47■□□□□ 0.71
TRIM28-203ENST00000593582 TAF1P21675 1872 aa19.46■□□□□ 0.71
TRIM28-203ENST00000593582 EPHX2P34913 555 aa19.46■□□□□ 0.71
TRIM28-203ENST00000593582 GCKRQ14397 625 aa19.46■□□□□ 0.71
TRIM28-203ENST00000593582 UBE3BQ7Z3V4 1068 aa19.46■□□□□ 0.71
TRIM28-203ENST00000593582 LDHDQ86WU2 507 aa19.46■□□□□ 0.71
TRIM28-203ENST00000593582 SCN4AP35499 1836 aa19.46■□□□□ 0.71
TRIM28-203ENST00000593582 H7C1W4 665 aa19.45■□□□□ 0.7
TRIM28-203ENST00000593582 POTEIP0CG38 1075 aa19.45■□□□□ 0.7
TRIM28-203ENST00000593582 POTEJP0CG39 1038 aa19.45■□□□□ 0.7
TRIM28-203ENST00000593582 LMOD1P29536 600 aaPredicted RBP19.45■□□□□ 0.7
TRIM28-203ENST00000593582 GPSM2P81274 684 aa19.45■□□□□ 0.7
TRIM28-203ENST00000593582 WASHC4Q2M389 1173 aa19.45■□□□□ 0.7
TRIM28-203ENST00000593582 EAPPQ56P03 285 aaPredicted RBP19.45■□□□□ 0.7
TRIM28-203ENST00000593582 PNMA8AQ86V59 439 aaPredicted RBP19.45■□□□□ 0.7
TRIM28-203ENST00000593582 C6orf229H3BNL8 230 aa19.44■□□□□ 0.7
TRIM28-203ENST00000593582 ANKRD18AQ8IVF6 992 aa19.44■□□□□ 0.7
TRIM28-203ENST00000593582 TTLL11Q8NHH1 800 aa19.44■□□□□ 0.7
TRIM28-203ENST00000593582 CDC5LQ99459 802 aaKnown RBP19.44■□□□□ 0.7
TRIM28-203ENST00000593582 ANKIB1Q9P2G1 1089 aa19.44■□□□□ 0.7
TRIM28-203ENST00000593582 LRRC37AA6NMS7 1700 aa19.44■□□□□ 0.7
TRIM28-203ENST00000593582 CACNA1FO60840 1977 aa19.44■□□□□ 0.7
TRIM28-203ENST00000593582 F6X3S4 739 aa19.43■□□□□ 0.7
TRIM28-203ENST00000593582 CXCL9Q07325 125 aa19.43■□□□□ 0.7
TRIM28-203ENST00000593582 EYA3Q99504 573 aa19.43■□□□□ 0.7
TRIM28-203ENST00000593582 POLLQ9UGP5 575 aa19.43■□□□□ 0.7
TRIM28-203ENST00000593582 DUOX1Q9NRD9 1551 aa19.42■□□□□ 0.7
TRIM28-203ENST00000593582 SCNN1DP51172 638 aa19.42■□□□□ 0.7
TRIM28-203ENST00000593582 HTRA3P83110 453 aa19.42■□□□□ 0.7
TRIM28-203ENST00000593582 GREM2Q9H772 168 aa19.42■□□□□ 0.7
TRIM28-203ENST00000593582 PODXL2Q9NZ53 605 aa19.42■□□□□ 0.7
TRIM28-203ENST00000593582 CLEC11AQ9Y240 323 aa19.42■□□□□ 0.7
TRIM28-203ENST00000593582 COL4A1P02462 1669 aa19.42■□□□□ 0.7
TRIM28-203ENST00000593582 SLFN5Q08AF3 891 aa19.41■□□□□ 0.7
TRIM28-203ENST00000593582 TNIP1Q15025 636 aa19.41■□□□□ 0.7
TRIM28-203ENST00000593582 BEND3Q5T5X7 828 aa19.41■□□□□ 0.7
TRIM28-203ENST00000593582 CIAPIN1Q6FI81 312 aa19.41■□□□□ 0.7
TRIM28-203ENST00000593582 DNAJC5GQ8N7S2 189 aa19.41■□□□□ 0.7
TRIM28-203ENST00000593582 TBC1D16Q8TBP0 767 aa19.41■□□□□ 0.7
TRIM28-203ENST00000593582 PLA2G12BQ9BX93 195 aa19.41■□□□□ 0.7
TRIM28-203ENST00000593582 RTL9Q8NET4 1388 aa19.41■□□□□ 0.7
TRIM28-203ENST00000593582 RIMBP2O15034 1052 aa19.4■□□□□ 0.7
TRIM28-203ENST00000593582 RAD17O75943 681 aa19.4■□□□□ 0.7
TRIM28-203ENST00000593582 ZC3H12CQ9C0D7 883 aaKnown RBP19.4■□□□□ 0.7
TRIM28-203ENST00000593582 GGA1Q9UJY5 639 aa19.4■□□□□ 0.7
TRIM28-203ENST00000593582 UFL1O94874 794 aa19.39■□□□□ 0.69
TRIM28-203ENST00000593582 EPS15P42566 896 aa19.39■□□□□ 0.69
TRIM28-203ENST00000593582 CASP7P55210 303 aa19.39■□□□□ 0.69
TRIM28-203ENST00000593582 YDJCA8MPS7 323 aa19.38■□□□□ 0.69
TRIM28-203ENST00000593582 XDHP47989 1333 aa19.38■□□□□ 0.69
TRIM28-203ENST00000593582 SLC4A10Q6U841 1118 aa19.38■□□□□ 0.69
TRIM28-203ENST00000593582 USP50Q70EL3 339 aaPredicted RBP19.38■□□□□ 0.69
TRIM28-203ENST00000593582 BCL2L13Q9BXK5 485 aa19.38■□□□□ 0.69
TRIM28-203ENST00000593582 DBNDD1Q9H9R9 158 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms