RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 PDE8AO60658 829 aa27.53■■■□□ 2
ATG4D-209ENST00000588857 BCL11AQ9H165 835 aa27.53■■■□□ 2
ATG4D-209ENST00000588857 PA2G4Q9UQ80 394 aaKnown RBP27.53■■■□□ 2
ATG4D-209ENST00000588857 QSER1Q2KHR3 1735 aa27.53■■■□□ 2
ATG4D-209ENST00000588857 SMARCA5O60264 1052 aaPredicted RBP27.52■■■□□ 2
ATG4D-209ENST00000588857 G3BP1Q13283 466 aaKnown RBP eCLIP27.52■■■□□ 2
ATG4D-209ENST00000588857 ERC1Q8IUD2 1116 aa27.52■■■□□ 2
ATG4D-209ENST00000588857 NYXQ9GZU5 481 aa27.52■■■□□ 2
ATG4D-209ENST00000588857 COPRSQ9NQ92 184 aa27.52■■■□□ 2
ATG4D-209ENST00000588857 DDX60Q8IY21 1712 aaKnown RBP27.51■■□□□ 1.99
ATG4D-209ENST00000588857 CSF1RP07333 972 aa27.51■■□□□ 1.99
ATG4D-209ENST00000588857 RFX5P48382 616 aaPredicted RBP27.51■■□□□ 1.99
ATG4D-209ENST00000588857 KIF1BPQ96EK5 621 aa27.51■■□□□ 1.99
ATG4D-209ENST00000588857 GTF2E1P29083 439 aaPredicted RBP27.5■■□□□ 1.99
ATG4D-209ENST00000588857 CTSWP56202 376 aa27.5■■□□□ 1.99
ATG4D-209ENST00000588857 CCDC57Q2TAC2 916 aa27.5■■□□□ 1.99
ATG4D-209ENST00000588857 NBPF5PQ86XG9 351 aaPredicted RBP27.49■■□□□ 1.99
ATG4D-209ENST00000588857 NUTM1Q86Y26 1132 aa27.49■■□□□ 1.99
ATG4D-209ENST00000588857 KLHDC4Q8TBB5 520 aa27.49■■□□□ 1.99
ATG4D-209ENST00000588857 RHPN1Q8TCX5 695 aa27.49■■□□□ 1.99
ATG4D-209ENST00000588857 SIL1Q9H173 461 aa27.49■■□□□ 1.99
ATG4D-209ENST00000588857 GYS1P13807 737 aa27.48■■□□□ 1.99
ATG4D-209ENST00000588857 HCLS1P14317 486 aaPredicted RBP27.48■■□□□ 1.99
ATG4D-209ENST00000588857 POLD1P28340 1107 aa27.48■■□□□ 1.99
ATG4D-209ENST00000588857 PTPN12Q05209 780 aaKnown RBP27.48■■□□□ 1.99
ATG4D-209ENST00000588857 TTLL11Q8NHH1 800 aa27.48■■□□□ 1.99
ATG4D-209ENST00000588857 TPTE2Q6XPS3 522 aa27.48■■□□□ 1.99
ATG4D-209ENST00000588857 IFIT5Q13325 482 aaKnown RBP27.47■■□□□ 1.99
ATG4D-209ENST00000588857 FAM161AQ3B820 660 aa27.47■■□□□ 1.99
ATG4D-209ENST00000588857 CCDC85AQ96PX6 553 aaPredicted RBP27.47■■□□□ 1.99
ATG4D-209ENST00000588857 CARMIL3Q8ND23 1372 aa27.47■■□□□ 1.99
ATG4D-209ENST00000588857 NFIXQ14938 502 aa27.46■■□□□ 1.99
ATG4D-209ENST00000588857 ERFEQ4G0M1 354 aa27.46■■□□□ 1.99
ATG4D-209ENST00000588857 C16orf71Q8IYS4 520 aaPredicted RBP27.46■■□□□ 1.99
ATG4D-209ENST00000588857 IL1RAPL2Q9NP60 686 aa27.45■■□□□ 1.99
ATG4D-209ENST00000588857 NPHP1O15259 732 aa27.44■■□□□ 1.98
ATG4D-209ENST00000588857 TAF7LQ5H9L4 462 aa27.44■■□□□ 1.98
ATG4D-209ENST00000588857 MSL1Q68DK7 614 aa27.44■■□□□ 1.98
ATG4D-209ENST00000588857 FHDC1Q9C0D6 1143 aaPredicted RBP27.44■■□□□ 1.98
ATG4D-209ENST00000588857 GREM2Q9H772 168 aa27.43■■□□□ 1.98
ATG4D-209ENST00000588857 ANKRD18BA2A2Z9 1011 aa27.43■■□□□ 1.98
ATG4D-209ENST00000588857 PLEKHM2Q8IWE5 1019 aa27.43■■□□□ 1.98
ATG4D-209ENST00000588857 SYT17Q9BSW7 474 aa27.43■■□□□ 1.98
ATG4D-209ENST00000588857 ITGA6P23229 1130 aa27.42■■□□□ 1.98
ATG4D-209ENST00000588857 CCDC152Q4G0S7 254 aa27.42■■□□□ 1.98
ATG4D-209ENST00000588857 SLC10A5Q5PT55 438 aa27.42■■□□□ 1.98
ATG4D-209ENST00000588857 CLASRPQ8N2M8 674 aaKnown RBP27.42■■□□□ 1.98
ATG4D-209ENST00000588857 SASH1O94885 1247 aa27.41■■□□□ 1.98
ATG4D-209ENST00000588857 ZNF594Q96JF6 807 aaPredicted RBP27.41■■□□□ 1.98
ATG4D-209ENST00000588857 NLGN1Q8N2Q7 840 aa27.4■■□□□ 1.98
ATG4D-209ENST00000588857 OTUD7AQ8TE49 926 aaPredicted RBP27.4■■□□□ 1.98
ATG4D-209ENST00000588857 EYA2O00167 538 aa27.39■■□□□ 1.98
ATG4D-209ENST00000588857 CIAO1O76071 339 aa27.39■■□□□ 1.98
ATG4D-209ENST00000588857 TM4SF1P30408 202 aa27.39■■□□□ 1.98
ATG4D-209ENST00000588857 FBXO3Q9UK99 471 aa27.39■■□□□ 1.98
ATG4D-209ENST00000588857 IL15P40933 162 aaPredicted RBP27.39■■□□□ 1.97
ATG4D-209ENST00000588857 CNBD1Q8NA66 436 aa27.39■■□□□ 1.97
ATG4D-209ENST00000588857 ABCC12Q96J65 1359 aa27.38■■□□□ 1.97
ATG4D-209ENST00000588857 RTL9Q8NET4 1388 aa27.38■■□□□ 1.97
ATG4D-209ENST00000588857 MX1P20591 662 aa27.37■■□□□ 1.97
ATG4D-209ENST00000588857 NLRP3Q96P20 1036 aa27.37■■□□□ 1.97
ATG4D-209ENST00000588857 ATG9AQ7Z3C6 839 aa27.36■■□□□ 1.97
ATG4D-209ENST00000588857 SERPINB2P05120 415 aa27.35■■□□□ 1.97
ATG4D-209ENST00000588857 IFIT2P09913 472 aaKnown RBP27.35■■□□□ 1.97
ATG4D-209ENST00000588857 PDE1AP54750 535 aa27.35■■□□□ 1.97
ATG4D-209ENST00000588857 TFCP2Q12800 502 aa27.35■■□□□ 1.97
ATG4D-209ENST00000588857 SF3B3Q15393 1217 aaKnown RBP27.35■■□□□ 1.97
ATG4D-209ENST00000588857 LRRC24Q50LG9 513 aa27.35■■□□□ 1.97
ATG4D-209ENST00000588857 LDHAL6AQ6ZMR3 332 aa27.35■■□□□ 1.97
ATG4D-209ENST00000588857 AACSQ86V21 672 aa27.35■■□□□ 1.97
ATG4D-209ENST00000588857 OSBPL3Q9H4L5 887 aa27.35■■□□□ 1.97
ATG4D-209ENST00000588857 SALL3Q9BXA9 1300 aa27.34■■□□□ 1.97
ATG4D-209ENST00000588857 SPEF2Q9C093 1822 aa27.34■■□□□ 1.97
ATG4D-209ENST00000588857 BMP2KLQ5H9B9 411 aa27.34■■□□□ 1.97
ATG4D-209ENST00000588857 PUS3Q9BZE2 481 aaKnown RBP27.34■■□□□ 1.97
ATG4D-209ENST00000588857 ST5P78524 1137 aa27.33■■□□□ 1.97
ATG4D-209ENST00000588857 DDR1Q08345 913 aa27.33■■□□□ 1.97
ATG4D-209ENST00000588857 PRR5LQ6MZQ0 368 aa27.33■■□□□ 1.97
ATG4D-209ENST00000588857 CCDC24Q8N4L8 307 aa27.33■■□□□ 1.97
ATG4D-209ENST00000588857 CNNM1Q9NRU3 951 aa27.33■■□□□ 1.97
ATG4D-209ENST00000588857 STAP2Q9UGK3 403 aa27.33■■□□□ 1.97
ATG4D-209ENST00000588857 POLRMTO00411 1230 aaKnown RBP27.32■■□□□ 1.96
ATG4D-209ENST00000588857 TTC22Q5TAA0 569 aa27.32■■□□□ 1.96
ATG4D-209ENST00000588857 C3orf67Q6ZVT6 689 aa27.32■■□□□ 1.96
ATG4D-209ENST00000588857 KLHL34Q8N239 644 aa27.32■■□□□ 1.96
ATG4D-209ENST00000588857 CEP126Q9P2H0 1117 aa27.32■■□□□ 1.96
ATG4D-209ENST00000588857 EAF2Q96CJ1 260 aaPredicted RBP27.31■■□□□ 1.96
ATG4D-209ENST00000588857 GPATCH3Q96I76 525 aa27.31■■□□□ 1.96
ATG4D-209ENST00000588857 CDC5LQ99459 802 aaKnown RBP27.31■■□□□ 1.96
ATG4D-209ENST00000588857 SEC31BQ9NQW1 1179 aa27.31■■□□□ 1.96
ATG4D-209ENST00000588857 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP27.31■■□□□ 1.96
ATG4D-209ENST00000588857 IGHMBP2P38935 993 aaKnown RBP27.31■■□□□ 1.96
ATG4D-209ENST00000588857 TNNI3KQ59H18 835 aa27.31■■□□□ 1.96
ATG4D-209ENST00000588857 MPHOSPH8Q99549 860 aa27.31■■□□□ 1.96
ATG4D-209ENST00000588857 FPGT-TNNI3KV9GXZ4 949 aa27.31■■□□□ 1.96
ATG4D-209ENST00000588857 AOX1Q06278 1338 aa27.3■■□□□ 1.96
ATG4D-209ENST00000588857 TNRC6CQ9HCJ0 1690 aaKnown RBP27.3■■□□□ 1.96
ATG4D-209ENST00000588857 GPR108Q9NPR9 543 aa27.3■■□□□ 1.96
ATG4D-209ENST00000588857 RIC1Q4ADV7 1423 aa27.29■■□□□ 1.96
ATG4D-209ENST00000588857 DCAF8L1A6NGE4 600 aa27.29■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms