RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 HSP90AB3PQ58FF7 597 aa8.79□□□□□ -1
VPS53-213ENST00000572334 PLBD2Q8NHP8 589 aa8.79□□□□□ -1
VPS53-213ENST00000572334 CFAP44Q96MT7 982 aa8.79□□□□□ -1
VPS53-213ENST00000572334 VPS33BQ9H267 617 aa8.79□□□□□ -1
VPS53-213ENST00000572334 MBIPQ9NS73 344 aa8.79□□□□□ -1
VPS53-213ENST00000572334 TRMT112Q9UI30 125 aaKnown RBP8.79□□□□□ -1
VPS53-213ENST00000572334 CLEC11AQ9Y240 323 aa8.79□□□□□ -1
VPS53-213ENST00000572334 LAS1LQ9Y4W2 734 aaKnown RBP8.79□□□□□ -1
VPS53-213ENST00000572334 ZNF646O15015 1829 aaPredicted RBP8.79□□□□□ -1
VPS53-213ENST00000572334 SH3TC1Q8TE82 1336 aa8.79□□□□□ -1
VPS53-213ENST00000572334 ATP5J2-PTCD1G3V325 749 aa8.78□□□□□ -1
VPS53-213ENST00000572334 BBOX1O75936 387 aa8.78□□□□□ -1
VPS53-213ENST00000572334 KIAA2012Q0VF49 1180 aa8.78□□□□□ -1
VPS53-213ENST00000572334 GRAPQ13588 217 aa8.78□□□□□ -1
VPS53-213ENST00000572334 HDGFL1Q5TGJ6 251 aa8.78□□□□□ -1
VPS53-213ENST00000572334 DUSP27Q5VZP5 1158 aa8.78□□□□□ -1
VPS53-213ENST00000572334 CST9Q5W186 159 aa8.78□□□□□ -1
VPS53-213ENST00000572334 POTEHQ6S545 545 aa8.78□□□□□ -1
VPS53-213ENST00000572334 ANKRD13DQ6ZTN6 518 aa8.78□□□□□ -1
VPS53-213ENST00000572334 NIM1KQ8IY84 436 aa8.78□□□□□ -1
VPS53-213ENST00000572334 TNS4Q8IZW8 715 aa8.78□□□□□ -1
VPS53-213ENST00000572334 GRAPLQ8TC17 118 aaPredicted RBP8.78□□□□□ -1
VPS53-213ENST00000572334 CELF1Q92879 486 aaKnown RBP8.78□□□□□ -1
VPS53-213ENST00000572334 WBP1LQ9NX94 342 aa8.78□□□□□ -1
VPS53-213ENST00000572334 GPRC5DQ9NZD1 345 aa8.78□□□□□ -1
VPS53-213ENST00000572334 SPEF2Q9C093 1822 aa8.77□□□□□ -1
VPS53-213ENST00000572334 SHTN1A0MZ66 631 aa8.77□□□□□ -1.01
VPS53-213ENST00000572334 TRAF5O00463 557 aa8.77□□□□□ -1.01
VPS53-213ENST00000572334 APAF1O14727 1248 aa8.77□□□□□ -1.01
VPS53-213ENST00000572334 HIRAP54198 1017 aaPredicted RBP8.77□□□□□ -1.01
VPS53-213ENST00000572334 TRIM28Q13263 835 aaKnown RBP8.77□□□□□ -1.01
VPS53-213ENST00000572334 SF3B3Q15393 1217 aaKnown RBP8.77□□□□□ -1.01
VPS53-213ENST00000572334 USP50Q70EL3 339 aaPredicted RBP8.77□□□□□ -1.01
VPS53-213ENST00000572334 MPNDQ8N594 471 aa8.77□□□□□ -1.01
VPS53-213ENST00000572334 FAM89AQ96GI7 184 aa8.77□□□□□ -1.01
VPS53-213ENST00000572334 PHAXQ9H814 394 aaKnown RBP8.77□□□□□ -1.01
VPS53-213ENST00000572334 RNF216Q9NWF9 866 aaPredicted RBP8.77□□□□□ -1.01
VPS53-213ENST00000572334 DBF4Q9UBU7 674 aaPredicted RBP8.77□□□□□ -1.01
VPS53-213ENST00000572334 PGAP2Q9UHJ9 254 aa8.77□□□□□ -1.01
VPS53-213ENST00000572334 ZNRF3Q9ULT6 936 aa8.77□□□□□ -1.01
VPS53-213ENST00000572334 CACNA1FO60840 1977 aa8.77□□□□□ -1.01
VPS53-213ENST00000572334 CASP8AP2Q9UKL3 1982 aa8.76□□□□□ -1.01
VPS53-213ENST00000572334 LMOD1P29536 600 aaPredicted RBP8.76□□□□□ -1.01
VPS53-213ENST00000572334 GMPSP49915 693 aaPredicted RBP8.76□□□□□ -1.01
VPS53-213ENST00000572334 WDR43Q15061 677 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS53-213ENST00000572334 DEFB115Q30KQ5 88 aa8.76□□□□□ -1.01
VPS53-213ENST00000572334 CCDC184Q52MB2 194 aa8.76□□□□□ -1.01
VPS53-213ENST00000572334 DPP8Q6V1X1 898 aaPredicted RBP8.76□□□□□ -1.01
VPS53-213ENST00000572334 DDX46Q7L014 1031 aaKnown RBP8.76□□□□□ -1.01
VPS53-213ENST00000572334 ADARB2Q9NS39 739 aaKnown RBP8.76□□□□□ -1.01
VPS53-213ENST00000572334 POLLQ9UGP5 575 aa8.76□□□□□ -1.01
VPS53-213ENST00000572334 WDR33Q9C0J8 1336 aaKnown RBP8.76□□□□□ -1.01
VPS53-213ENST00000572334 CAPN15O75808 1086 aa8.75□□□□□ -1.01
VPS53-213ENST00000572334 RAD17O75943 681 aa8.75□□□□□ -1.01
VPS53-213ENST00000572334 CIAPIN1Q6FI81 312 aa8.75□□□□□ -1.01
VPS53-213ENST00000572334 C8orf58Q8NAV2 365 aa8.75□□□□□ -1.01
VPS53-213ENST00000572334 SUPT20HQ8NEM7 779 aa8.75□□□□□ -1.01
VPS53-213ENST00000572334 TRPM4Q8TD43 1214 aa8.75□□□□□ -1.01
VPS53-213ENST00000572334 PRDM10Q9NQV6 1147 aa8.75□□□□□ -1.01
VPS53-213ENST00000572334 KCNQ5Q9NR82 932 aa8.75□□□□□ -1.01
VPS53-213ENST00000572334 IFT57Q9NWB7 429 aa8.75□□□□□ -1.01
VPS53-213ENST00000572334 HYPKQ9NX55 129 aa8.75□□□□□ -1.01
VPS53-213ENST00000572334 RTL9Q8NET4 1388 aa8.74□□□□□ -1.01
VPS53-213ENST00000572334 ELL2O00472 640 aaPredicted RBP8.74□□□□□ -1.01
VPS53-213ENST00000572334 IRS4O14654 1257 aaPredicted RBP8.74□□□□□ -1.01
VPS53-213ENST00000572334 EGFRP00533 1210 aa8.74□□□□□ -1.01
VPS53-213ENST00000572334 HSPA8P11142 646 aaKnown RBP8.74□□□□□ -1.01
VPS53-213ENST00000572334 GPSM2P81274 684 aa8.74□□□□□ -1.01
VPS53-213ENST00000572334 RTL5Q5HYW3 569 aaPredicted RBP8.74□□□□□ -1.01
VPS53-213ENST00000572334 DLK2Q6UY11 383 aa8.74□□□□□ -1.01
VPS53-213ENST00000572334 TMC4Q7Z404 712 aa8.74□□□□□ -1.01
VPS53-213ENST00000572334 TSPYL6Q8N831 410 aa8.74□□□□□ -1.01
VPS53-213ENST00000572334 GPR101Q96P66 508 aaPredicted RBP8.74□□□□□ -1.01
VPS53-213ENST00000572334 GLIS2Q9BZE0 524 aaPredicted RBP8.74□□□□□ -1.01
VPS53-213ENST00000572334 SEC31BQ9NQW1 1179 aa8.74□□□□□ -1.01
VPS53-213ENST00000572334 ZBTB12Q9Y330 459 aaPredicted RBP8.74□□□□□ -1.01
VPS53-213ENST00000572334 TLL2Q9Y6L7 1015 aa8.74□□□□□ -1.01
VPS53-213ENST00000572334 CDHR2Q9BYE9 1310 aa8.74□□□□□ -1.01
VPS53-213ENST00000572334 PSMD14O00487 310 aa8.73□□□□□ -1.01
VPS53-213ENST00000572334 CTCFP49711 727 aaPredicted RBP8.73□□□□□ -1.01
VPS53-213ENST00000572334 LBX1P52954 281 aa8.73□□□□□ -1.01
VPS53-213ENST00000572334 CYP4F22Q6NT55 531 aa8.73□□□□□ -1.01
VPS53-213ENST00000572334 ZBTB38Q8NAP3 1195 aaPredicted RBP8.73□□□□□ -1.01
VPS53-213ENST00000572334 JARID2Q92833 1246 aaPredicted RBP8.73□□□□□ -1.01
VPS53-213ENST00000572334 CAPNS2Q96L46 248 aa8.73□□□□□ -1.01
VPS53-213ENST00000572334 DBNDD1Q9H9R9 158 aa8.73□□□□□ -1.01
VPS53-213ENST00000572334 CNOT7Q9UIV1 285 aaKnown RBP8.73□□□□□ -1.01
VPS53-213ENST00000572334 ABT1Q9ULW3 272 aaKnown RBP8.73□□□□□ -1.01
VPS53-213ENST00000572334 A0A1B0GUL6 1792 aa8.73□□□□□ -1.01
VPS53-213ENST00000572334 WTIPA6NIX2 430 aaPredicted RBP8.72□□□□□ -1.01
VPS53-213ENST00000572334 RPS8P62241 208 aaKnown RBP8.72□□□□□ -1.01
VPS53-213ENST00000572334 GNAI1P63096 354 aa8.72□□□□□ -1.01
VPS53-213ENST00000572334 TNIP1Q15025 636 aa8.72□□□□□ -1.01
VPS53-213ENST00000572334 WASHC4Q2M389 1173 aa8.72□□□□□ -1.01
VPS53-213ENST00000572334 PPP4R3CPQ6ZMV5 832 aa8.72□□□□□ -1.01
VPS53-213ENST00000572334 SAPCD2Q86UD0 394 aa8.72□□□□□ -1.01
VPS53-213ENST00000572334 MICALL2Q8IY33 904 aa8.72□□□□□ -1.01
VPS53-213ENST00000572334 TBC1D16Q8TBP0 767 aa8.72□□□□□ -1.01
VPS53-213ENST00000572334 ZC3H15Q8WU90 426 aaKnown RBP8.72□□□□□ -1.01
VPS53-213ENST00000572334 MYD88Q99836 296 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 582.2 ms