RNA–Protein interactions for RNA: ENST00000569653.1

GTF3C1-211, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 2

Gene GTF3C1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-211ENST00000569653 BBOX1O75936 387 aa17.97■□□□□ 0.47
GTF3C1-211ENST00000569653 EIF6P56537 245 aaKnown RBP17.97■□□□□ 0.47
GTF3C1-211ENST00000569653 FMR1Q06787 632 aaKnown RBP eCLIP17.97■□□□□ 0.473e-6■■■□□ 19.2
GTF3C1-211ENST00000569653 CXCL9Q07325 125 aa17.97■□□□□ 0.47
GTF3C1-211ENST00000569653 TRIM28Q13263 835 aaKnown RBP17.97■□□□□ 0.47
GTF3C1-211ENST00000569653 SF3B3Q15393 1217 aaKnown RBP17.97■□□□□ 0.47
GTF3C1-211ENST00000569653 COL13A1Q5TAT6 717 aaPredicted RBP17.97■□□□□ 0.47
GTF3C1-211ENST00000569653 NIM1KQ8IY84 436 aa17.97■□□□□ 0.47
GTF3C1-211ENST00000569653 MKRN1Q9UHC7 482 aaKnown RBP17.97■□□□□ 0.47
GTF3C1-211ENST00000569653 SCN9AQ15858 1988 aa17.97■□□□□ 0.47
GTF3C1-211ENST00000569653 DPP8Q6V1X1 898 aaPredicted RBP17.96■□□□□ 0.47
GTF3C1-211ENST00000569653 DDX46Q7L014 1031 aaKnown RBP17.96■□□□□ 0.47
GTF3C1-211ENST00000569653 TRPM7Q96QT4 1865 aa17.96■□□□□ 0.47
GTF3C1-211ENST00000569653 CNTNAP1P78357 1384 aa17.95■□□□□ 0.46
GTF3C1-211ENST00000569653 YDJCA8MPS7 323 aa17.95■□□□□ 0.46
GTF3C1-211ENST00000569653 HSPA1AP0DMV8 641 aaKnown RBP17.95■□□□□ 0.46
GTF3C1-211ENST00000569653 HSPA1BP0DMV9 641 aaKnown RBP17.95■□□□□ 0.46
GTF3C1-211ENST00000569653 KIAA2012Q0VF49 1180 aa17.95■□□□□ 0.46
GTF3C1-211ENST00000569653 MPNDQ8N594 471 aa17.95■□□□□ 0.46
GTF3C1-211ENST00000569653 JARID2Q92833 1246 aaPredicted RBP17.95■□□□□ 0.46
GTF3C1-211ENST00000569653 PNMA8AQ86V59 439 aaPredicted RBP17.94■□□□□ 0.46
GTF3C1-211ENST00000569653 CNTROBQ8N137 903 aa17.94■□□□□ 0.46
GTF3C1-211ENST00000569653 MYD88Q99836 296 aa17.94■□□□□ 0.46
GTF3C1-211ENST00000569653 ZNRF3Q9ULT6 936 aa17.94■□□□□ 0.46
GTF3C1-211ENST00000569653 CLEC11AQ9Y240 323 aa17.94■□□□□ 0.46
GTF3C1-211ENST00000569653 SPEF2Q9C093 1822 aa17.93■□□□□ 0.46
GTF3C1-211ENST00000569653 SHTN1A0MZ66 631 aa17.93■□□□□ 0.46
GTF3C1-211ENST00000569653 IRS4O14654 1257 aaPredicted RBP17.93■□□□□ 0.46
GTF3C1-211ENST00000569653 RIC3Q7Z5B4 369 aa17.93■□□□□ 0.46
GTF3C1-211ENST00000569653 MYH3P11055 1940 aa17.93■□□□□ 0.46
GTF3C1-211ENST00000569653 GMPSP49915 693 aaPredicted RBP17.92■□□□□ 0.46
GTF3C1-211ENST00000569653 GPSM2P81274 684 aa17.92■□□□□ 0.46
GTF3C1-211ENST00000569653 CALD1Q05682 793 aaKnown RBP17.92■□□□□ 0.46
GTF3C1-211ENST00000569653 GOLGA2Q08379 1002 aa17.92■□□□□ 0.46
GTF3C1-211ENST00000569653 WWC1Q8IX03 1113 aa17.92■□□□□ 0.46
GTF3C1-211ENST00000569653 GPR101Q96P66 508 aaPredicted RBP17.92■□□□□ 0.46
GTF3C1-211ENST00000569653 VPS33BQ9H267 617 aa17.92■□□□□ 0.46
GTF3C1-211ENST00000569653 SEC31BQ9NQW1 1179 aa17.92■□□□□ 0.46
GTF3C1-211ENST00000569653 GPRC5DQ9NZD1 345 aa17.92■□□□□ 0.46
GTF3C1-211ENST00000569653 POLLQ9UGP5 575 aa17.92■□□□□ 0.46
GTF3C1-211ENST00000569653 TMEM88BA6NKF7 163 aa17.91■□□□□ 0.46
GTF3C1-211ENST00000569653 RAD17O75943 681 aa17.91■□□□□ 0.46
GTF3C1-211ENST00000569653 CCDC27Q2M243 656 aa17.91■□□□□ 0.46
GTF3C1-211ENST00000569653 G2E3Q7L622 706 aa17.91■□□□□ 0.46
GTF3C1-211ENST00000569653 ZBTB38Q8NAP3 1195 aaPredicted RBP17.91■□□□□ 0.46
GTF3C1-211ENST00000569653 SUPT20HQ8NEM7 779 aa17.91■□□□□ 0.46
GTF3C1-211ENST00000569653 TRAF5O00463 557 aa17.9■□□□□ 0.46
GTF3C1-211ENST00000569653 IGKV5-2P06315 115 aa17.9■□□□□ 0.46
GTF3C1-211ENST00000569653 LMOD1P29536 600 aaPredicted RBP17.9■□□□□ 0.46
GTF3C1-211ENST00000569653 VEGFBP49765 207 aa17.9■□□□□ 0.46
GTF3C1-211ENST00000569653 METTL22Q9BUU2 404 aaPredicted RBP17.9■□□□□ 0.46
GTF3C1-211ENST00000569653 POLR2AP24928 1970 aaKnown RBP17.9■□□□□ 0.46
GTF3C1-211ENST00000569653 HIRAP54198 1017 aaPredicted RBP17.89■□□□□ 0.45
GTF3C1-211ENST00000569653 KCNQ5Q9NR82 932 aa17.89■□□□□ 0.45
GTF3C1-211ENST00000569653 MAP3K2Q9Y2U5 619 aa17.89■□□□□ 0.45
GTF3C1-211ENST00000569653 THSD7BQ9C0I4 1608 aa17.89■□□□□ 0.45
GTF3C1-211ENST00000569653 ZNF646O15015 1829 aaPredicted RBP17.88■□□□□ 0.45
GTF3C1-211ENST00000569653 PSME4Q14997 1843 aa17.88■□□□□ 0.45
GTF3C1-211ENST00000569653 PCCAP05165 728 aaPredicted RBP17.88■□□□□ 0.45
GTF3C1-211ENST00000569653 CCDC30Q5VVM6 783 aa17.88■□□□□ 0.45
GTF3C1-211ENST00000569653 CIAPIN1Q6FI81 312 aa17.88■□□□□ 0.45
GTF3C1-211ENST00000569653 USP50Q70EL3 339 aaPredicted RBP17.88■□□□□ 0.45
GTF3C1-211ENST00000569653 TMC4Q7Z404 712 aa17.88■□□□□ 0.45
GTF3C1-211ENST00000569653 TRPM4Q8TD43 1214 aa17.88■□□□□ 0.45
GTF3C1-211ENST00000569653 CCDC85AQ96PX6 553 aaPredicted RBP17.88■□□□□ 0.45
GTF3C1-211ENST00000569653 TMX4Q9H1E5 349 aaPredicted RBP17.88■□□□□ 0.45
GTF3C1-211ENST00000569653 MRS2Q9HD23 443 aa17.88■□□□□ 0.45
GTF3C1-211ENST00000569653 NSFL1CQ9UNZ2 370 aaKnown RBP17.88■□□□□ 0.45
GTF3C1-211ENST00000569653 RTL9Q8NET4 1388 aa17.88■□□□□ 0.45
GTF3C1-211ENST00000569653 CACNA1FO60840 1977 aa17.88■□□□□ 0.45
GTF3C1-211ENST00000569653 RPS8P62241 208 aaKnown RBP17.87■□□□□ 0.45
GTF3C1-211ENST00000569653 CST9Q5W186 159 aa17.87■□□□□ 0.45
GTF3C1-211ENST00000569653 CCDC191Q8NCU4 936 aa17.87■□□□□ 0.45
GTF3C1-211ENST00000569653 DBNDD1Q9H9R9 158 aa17.87■□□□□ 0.45
GTF3C1-211ENST00000569653 ADARB2Q9NS39 739 aaKnown RBP17.87■□□□□ 0.45
GTF3C1-211ENST00000569653 CWC25Q9NXE8 425 aaPredicted RBP17.87■□□□□ 0.45
GTF3C1-211ENST00000569653 PI4KAP2A4QPH2 592 aa17.86■□□□□ 0.45
GTF3C1-211ENST00000569653 RASSF10A6NK89 507 aa17.86■□□□□ 0.45
GTF3C1-211ENST00000569653 RIMBP2O15034 1052 aa17.86■□□□□ 0.45
GTF3C1-211ENST00000569653 EGFRP00533 1210 aa17.86■□□□□ 0.45
GTF3C1-211ENST00000569653 PI4KAP1Q8N8J0 262 aa17.86■□□□□ 0.45
GTF3C1-211ENST00000569653 TBC1D16Q8TBP0 767 aa17.86■□□□□ 0.45
GTF3C1-211ENST00000569653 ZBTB12Q9Y330 459 aaPredicted RBP17.86■□□□□ 0.45
GTF3C1-211ENST00000569653 FANCIQ9NVI1 1328 aa17.86■□□□□ 0.45
GTF3C1-211ENST00000569653 ZNF316A6NFI3 1004 aaPredicted RBP17.85■□□□□ 0.45
GTF3C1-211ENST00000569653 WTIPA6NIX2 430 aaPredicted RBP17.85■□□□□ 0.45
GTF3C1-211ENST00000569653 FOXN1O15353 648 aa17.85■□□□□ 0.45
GTF3C1-211ENST00000569653 WASHC4Q2M389 1173 aa17.85■□□□□ 0.45
GTF3C1-211ENST00000569653 CWF19L2Q2TBE0 894 aaKnown RBP17.85■□□□□ 0.45
GTF3C1-211ENST00000569653 TWISTNBQ3B726 338 aaPredicted RBP17.85■□□□□ 0.45
GTF3C1-211ENST00000569653 KSR2Q6VAB6 950 aa17.85■□□□□ 0.45
GTF3C1-211ENST00000569653 SPINK5Q9NQ38 1064 aaPredicted RBP17.85■□□□□ 0.45
GTF3C1-211ENST00000569653 IL16Q14005 1332 aa17.84■□□□□ 0.45
GTF3C1-211ENST00000569653 CDHR2Q9BYE9 1310 aa17.84■□□□□ 0.45
GTF3C1-211ENST00000569653 C6orf229H3BNL8 230 aa17.84■□□□□ 0.45
GTF3C1-211ENST00000569653 PSMD14O00487 310 aa17.84■□□□□ 0.45
GTF3C1-211ENST00000569653 PDE8AO60658 829 aa17.84■□□□□ 0.45
GTF3C1-211ENST00000569653 DOK7Q18PE1 504 aa17.84■□□□□ 0.45
GTF3C1-211ENST00000569653 DLK2Q6UY11 383 aa17.84■□□□□ 0.45
GTF3C1-211ENST00000569653 GLIS2Q9BZE0 524 aaPredicted RBP17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms