RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 DIAPH3Q9NSV4 1193 aa8.6□□□□□ -1.03
SMG1-215ENST00000568239 DBNLQ9UJU6 430 aaKnown RBP8.6□□□□□ -1.03
SMG1-215ENST00000568239 ITGA6P23229 1130 aa8.59□□□□□ -1.03
SMG1-215ENST00000568239 ATG9AQ7Z3C6 839 aa8.59□□□□□ -1.03
SMG1-215ENST00000568239 CEP126Q9P2H0 1117 aa8.59□□□□□ -1.03
SMG1-215ENST00000568239 ZNF652Q9Y2D9 606 aa8.59□□□□□ -1.03
SMG1-215ENST00000568239 SH3TC1Q8TE82 1336 aa8.59□□□□□ -1.03
SMG1-215ENST00000568239 ATRNO75882 1429 aa8.59□□□□□ -1.03
SMG1-215ENST00000568239 CTSWP56202 376 aa8.59□□□□□ -1.03
SMG1-215ENST00000568239 LDHAL6AQ6ZMR3 332 aa8.59□□□□□ -1.03
SMG1-215ENST00000568239 TTLL11Q8NHH1 800 aa8.59□□□□□ -1.03
SMG1-215ENST00000568239 DNAJC2Q99543 621 aaKnown RBP8.59□□□□□ -1.03
SMG1-215ENST00000568239 UTP14AQ9BVJ6 771 aaKnown RBP8.59□□□□□ -1.03
SMG1-215ENST00000568239 NDUFB9Q9Y6M9 179 aa8.59□□□□□ -1.03
SMG1-215ENST00000568239 USP42Q9H9J4 1324 aaKnown RBP8.59□□□□□ -1.03
SMG1-215ENST00000568239 ANKRD18BA2A2Z9 1011 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 ONECUT3O60422 494 aaPredicted RBP8.58□□□□□ -1.04
SMG1-215ENST00000568239 PHF14O94880 888 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 GTF2E1P29083 439 aaPredicted RBP8.58□□□□□ -1.04
SMG1-215ENST00000568239 EVI5LQ96CN4 794 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 FSD1Q9BTV5 496 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 CNNM1Q9NRU3 951 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 BTAF1O14981 1849 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 THSD7AQ9UPZ6 1657 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 CDHR2Q9BYE9 1310 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 PDE8AO60658 829 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 GORABQ5T7V8 394 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 EDC3Q96F86 508 aaKnown RBP8.58□□□□□ -1.04
SMG1-215ENST00000568239 ANP32EQ9BTT0 268 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 PLA2G12BQ9BX93 195 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 IL25Q9H293 177 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 A0A1B0GUL7 405 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 CSF1RP07333 972 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 KIAA1211Q6ZU35 1233 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 KRT27Q7Z3Y8 459 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 KIF2CQ99661 725 aa8.58□□□□□ -1.04
SMG1-215ENST00000568239 RTCBQ9Y3I0 505 aaKnown RBP8.58□□□□□ -1.04
SMG1-215ENST00000568239 ANKRD36CQ5JPF3 1778 aa8.57□□□□□ -1.04
SMG1-215ENST00000568239 TUBGCP6Q96RT7 1819 aa8.57□□□□□ -1.04
SMG1-215ENST00000568239 ZPR1O75312 459 aa8.57□□□□□ -1.04
SMG1-215ENST00000568239 TRIM37O94972 964 aa8.57□□□□□ -1.04
SMG1-215ENST00000568239 PARP10Q53GL7 1025 aa8.57□□□□□ -1.04
SMG1-215ENST00000568239 METTL24Q5JXM2 366 aa8.57□□□□□ -1.04
SMG1-215ENST00000568239 USPL1Q5W0Q7 1092 aa8.57□□□□□ -1.04
SMG1-215ENST00000568239 SRP68Q9UHB9 627 aaKnown RBP8.57□□□□□ -1.04
SMG1-215ENST00000568239 NPHP1O15259 732 aa8.57□□□□□ -1.04
SMG1-215ENST00000568239 CIAO1O76071 339 aa8.57□□□□□ -1.04
SMG1-215ENST00000568239 HSP90AA1P07900 732 aaKnown RBP8.57□□□□□ -1.04
SMG1-215ENST00000568239 MCCP23508 829 aa8.57□□□□□ -1.04
SMG1-215ENST00000568239 CNTNAP4Q9C0A0 1308 aa8.57□□□□□ -1.04
SMG1-215ENST00000568239 RUFY2Q8WXA3 655 aa8.56□□□□□ -1.04
SMG1-215ENST00000568239 AK7Q96M32 723 aa8.56□□□□□ -1.04
SMG1-215ENST00000568239 BCL11BQ9C0K0 894 aaPredicted RBP8.56□□□□□ -1.04
SMG1-215ENST00000568239 TAOK2Q9UL54 1235 aa8.56□□□□□ -1.04
SMG1-215ENST00000568239 RPS6KA4O75676 772 aa8.56□□□□□ -1.04
SMG1-215ENST00000568239 ATP5JP18859 108 aa8.56□□□□□ -1.04
SMG1-215ENST00000568239 FAM196AQ6ZSG2 479 aa8.56□□□□□ -1.04
SMG1-215ENST00000568239 DDX46Q7L014 1031 aaKnown RBP8.56□□□□□ -1.04
SMG1-215ENST00000568239 MYH3P11055 1940 aa8.56□□□□□ -1.04
SMG1-215ENST00000568239 SGSM2O43147 1006 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 CLEC4GQ6UXB4 293 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 FAM227BQ96M60 508 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 MPHOSPH8Q99549 860 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 FOXD4L1Q9NU39 408 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 AKAP2Q9Y2D5 859 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 COL5A3P25940 1745 aaPredicted RBP8.55□□□□□ -1.04
SMG1-215ENST00000568239 NHSQ6T4R5 1651 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 CD2BP2O95400 341 aaKnown RBP8.55□□□□□ -1.04
SMG1-215ENST00000568239 NTSR2O95665 410 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 RFC4P35249 363 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 RABEP1Q15276 862 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 RC3H1Q5TC82 1133 aaKnown RBP8.55□□□□□ -1.04
SMG1-215ENST00000568239 TBC1D9BQ66K14 1250 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 AMIGO3Q86WK7 504 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 CCDC24Q8N4L8 307 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 HELBQ8NG08 1087 aaPredicted RBP8.55□□□□□ -1.04
SMG1-215ENST00000568239 ARHGEF1Q92888 912 aaKnown RBP8.55□□□□□ -1.04
SMG1-215ENST00000568239 SETDB2Q96T68 719 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 SEC31BQ9NQW1 1179 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 GOLIM4O00461 696 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 IFIT1P09914 478 aaKnown RBP8.55□□□□□ -1.04
SMG1-215ENST00000568239 FKBP4Q02790 459 aaKnown RBP eCLIP8.55□□□□□ -1.04
SMG1-215ENST00000568239 NMIQ13287 307 aaPredicted RBP8.55□□□□□ -1.04
SMG1-215ENST00000568239 CCDC152Q4G0S7 254 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 CCDC158Q5M9N0 1113 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 TTC39AQ5SRH9 613 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 ZNF772Q68DY9 489 aaPredicted RBP8.55□□□□□ -1.04
SMG1-215ENST00000568239 GPR108Q9NPR9 543 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 SBF2Q86WG5 1849 aa8.55□□□□□ -1.04
SMG1-215ENST00000568239 HSP90B1P14625 803 aaKnown RBP8.54□□□□□ -1.04
SMG1-215ENST00000568239 ADORA1P30542 326 aa8.54□□□□□ -1.04
SMG1-215ENST00000568239 KCNJ4P48050 445 aa8.54□□□□□ -1.04
SMG1-215ENST00000568239 ERFEQ4G0M1 354 aa8.54□□□□□ -1.04
SMG1-215ENST00000568239 TRAPPC3LQ5T215 181 aa8.54□□□□□ -1.04
SMG1-215ENST00000568239 XAGE2Q96GT9 111 aa8.54□□□□□ -1.04
SMG1-215ENST00000568239 SNRKQ9NRH2 765 aa8.54□□□□□ -1.04
SMG1-215ENST00000568239 LRRC4BQ9NT99 713 aa8.54□□□□□ -1.04
SMG1-215ENST00000568239 NARFQ9UHQ1 456 aa8.54□□□□□ -1.04
SMG1-215ENST00000568239 FBXO3Q9UK99 471 aa8.54□□□□□ -1.04
SMG1-215ENST00000568239 PALD1Q9ULE6 856 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms