RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 NBPF5PQ86XG9 351 aaPredicted RBP37.83■■■■□ 3.65
CTCF-203ENST00000566078 CCDC85AQ96PX6 553 aaPredicted RBP37.83■■■■□ 3.65
CTCF-203ENST00000566078 SIL1Q9H173 461 aa37.83■■■■□ 3.65
CTCF-203ENST00000566078 STK32BQ9NY57 414 aa37.83■■■■□ 3.65
CTCF-203ENST00000566078 PNPLA7Q6ZV29 1317 aa37.83■■■■□ 3.65
CTCF-203ENST00000566078 HSP90B1P14625 803 aaKnown RBP37.82■■■■□ 3.64
CTCF-203ENST00000566078 ERFEQ4G0M1 354 aa37.82■■■■□ 3.64
CTCF-203ENST00000566078 TTLL11Q8NHH1 800 aa37.81■■■■□ 3.64
CTCF-203ENST00000566078 G3BP1Q13283 466 aaKnown RBP eCLIP37.8■■■■□ 3.64
CTCF-203ENST00000566078 SLC15A2Q16348 729 aa37.8■■■■□ 3.64
CTCF-203ENST00000566078 RHPN1Q8TCX5 695 aa37.8■■■■□ 3.64
CTCF-203ENST00000566078 KIF1BPQ96EK5 621 aa37.8■■■■□ 3.64
CTCF-203ENST00000566078 GTF2E1P29083 439 aaPredicted RBP37.79■■■■□ 3.64
CTCF-203ENST00000566078 ERC1Q8IUD2 1116 aa37.79■■■■□ 3.64
CTCF-203ENST00000566078 ABCC12Q96J65 1359 aa37.79■■■■□ 3.64
CTCF-203ENST00000566078 TNRC6CQ9HCJ0 1690 aaKnown RBP37.79■■■■□ 3.64
CTCF-203ENST00000566078 CCDC57Q2TAC2 916 aa37.79■■■■□ 3.64
CTCF-203ENST00000566078 GREM2Q9H772 168 aa37.77■■■■□ 3.64
CTCF-203ENST00000566078 TPTE2Q6XPS3 522 aa37.76■■■■□ 3.64
CTCF-203ENST00000566078 C16orf71Q8IYS4 520 aaPredicted RBP37.76■■■■□ 3.64
CTCF-203ENST00000566078 IL1RAPL2Q9NP60 686 aa37.76■■■■□ 3.64
CTCF-203ENST00000566078 IFIT5Q13325 482 aaKnown RBP37.76■■■■□ 3.63
CTCF-203ENST00000566078 ZNF594Q96JF6 807 aaPredicted RBP37.75■■■■□ 3.63
CTCF-203ENST00000566078 LRP5O75197 1615 aa37.74■■■■□ 3.63
CTCF-203ENST00000566078 ITGA6P23229 1130 aa37.73■■■■□ 3.63
CTCF-203ENST00000566078 TM4SF1P30408 202 aa37.73■■■■□ 3.63
CTCF-203ENST00000566078 TAF1P21675 1872 aa37.73■■■■□ 3.63
CTCF-203ENST00000566078 NRXN2Q9P2S2 1712 aa37.72■■■■□ 3.63
CTCF-203ENST00000566078 NPHP1O15259 732 aa37.72■■■■□ 3.63
CTCF-203ENST00000566078 OTUD7AQ8TE49 926 aaPredicted RBP37.72■■■■□ 3.63
CTCF-203ENST00000566078 ANKRD18BA2A2Z9 1011 aa37.72■■■■□ 3.63
CTCF-203ENST00000566078 SASH1O94885 1247 aa37.72■■■■□ 3.63
CTCF-203ENST00000566078 TAF7LQ5H9L4 462 aa37.72■■■■□ 3.63
CTCF-203ENST00000566078 SLC10A5Q5PT55 438 aa37.72■■■■□ 3.63
CTCF-203ENST00000566078 CCDC152Q4G0S7 254 aa37.71■■■■□ 3.63
CTCF-203ENST00000566078 CNBD1Q8NA66 436 aa37.7■■■■□ 3.63
CTCF-203ENST00000566078 RTL9Q8NET4 1388 aa37.69■■■■□ 3.62
CTCF-203ENST00000566078 PLEKHM2Q8IWE5 1019 aa37.69■■■■□ 3.62
CTCF-203ENST00000566078 DDR1Q08345 913 aa37.69■■■■□ 3.62
CTCF-203ENST00000566078 NLGN1Q8N2Q7 840 aa37.69■■■■□ 3.62
CTCF-203ENST00000566078 CCDC24Q8N4L8 307 aa37.69■■■■□ 3.62
CTCF-203ENST00000566078 EYA2O00167 538 aa37.68■■■■□ 3.62
CTCF-203ENST00000566078 SERPINB2P05120 415 aa37.67■■■■□ 3.62
CTCF-203ENST00000566078 C3orf67Q6ZVT6 689 aa37.67■■■■□ 3.62
CTCF-203ENST00000566078 POLRMTO00411 1230 aaKnown RBP37.66■■■■□ 3.62
CTCF-203ENST00000566078 CIAO1O76071 339 aa37.66■■■■□ 3.62
CTCF-203ENST00000566078 ATG9AQ7Z3C6 839 aa37.66■■■■□ 3.62
CTCF-203ENST00000566078 CLASRPQ8N2M8 674 aaKnown RBP37.66■■■■□ 3.62
CTCF-203ENST00000566078 LRRC24Q50LG9 513 aa37.65■■■■□ 3.62
CTCF-203ENST00000566078 PRR5LQ6MZQ0 368 aa37.65■■■■□ 3.62
CTCF-203ENST00000566078 ANKRD31Q8N7Z5 1873 aa37.65■■■■□ 3.62
CTCF-203ENST00000566078 IL15P40933 162 aaPredicted RBP37.65■■■■□ 3.62
CTCF-203ENST00000566078 PUS3Q9BZE2 481 aaKnown RBP37.65■■■■□ 3.62
CTCF-203ENST00000566078 FBXO3Q9UK99 471 aa37.65■■■■□ 3.62
CTCF-203ENST00000566078 SALL3Q9BXA9 1300 aa37.64■■■■□ 3.62
CTCF-203ENST00000566078 COL4A1P02462 1669 aa37.64■■■■□ 3.62
CTCF-203ENST00000566078 A0A1B0GUL6 1792 aa37.64■■■■□ 3.62
CTCF-203ENST00000566078 RIC1Q4ADV7 1423 aa37.64■■■■□ 3.62
CTCF-203ENST00000566078 SF3B3Q15393 1217 aaKnown RBP37.64■■■■□ 3.62
CTCF-203ENST00000566078 NLRP3Q96P20 1036 aa37.64■■■■□ 3.62
CTCF-203ENST00000566078 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP37.64■■■■□ 3.62
CTCF-203ENST00000566078 TFCP2Q12800 502 aa37.63■■■■□ 3.61
CTCF-203ENST00000566078 MSL1Q68DK7 614 aa37.62■■■■□ 3.61
CTCF-203ENST00000566078 SEC31BQ9NQW1 1179 aa37.62■■■■□ 3.61
CTCF-203ENST00000566078 MX1P20591 662 aa37.61■■■■□ 3.61
CTCF-203ENST00000566078 ST5P78524 1137 aa37.61■■■■□ 3.61
CTCF-203ENST00000566078 AK9Q5TCS8 1911 aa37.61■■■■□ 3.61
CTCF-203ENST00000566078 AACSQ86V21 672 aa37.6■■■■□ 3.61
CTCF-203ENST00000566078 PDE1AP54750 535 aa37.59■■■■□ 3.61
CTCF-203ENST00000566078 LDHAL6AQ6ZMR3 332 aa37.59■■■■□ 3.61
CTCF-203ENST00000566078 UPF1Q92900 1129 aaKnown RBP eCLIP37.59■■■■□ 3.61
CTCF-203ENST00000566078 CNNM1Q9NRU3 951 aa37.58■■■■□ 3.61
CTCF-203ENST00000566078 IFIT2P09913 472 aaKnown RBP37.58■■■■□ 3.61
CTCF-203ENST00000566078 MMP10P09238 476 aa37.57■■■■□ 3.6
CTCF-203ENST00000566078 EAF2Q96CJ1 260 aaPredicted RBP37.57■■■■□ 3.6
CTCF-203ENST00000566078 OSBPL3Q9H4L5 887 aa37.57■■■■□ 3.6
CTCF-203ENST00000566078 TNNI3KQ59H18 835 aa37.56■■■■□ 3.6
CTCF-203ENST00000566078 FPGT-TNNI3KV9GXZ4 949 aa37.56■■■■□ 3.6
CTCF-203ENST00000566078 TTC22Q5TAA0 569 aa37.55■■■■□ 3.6
CTCF-203ENST00000566078 TSHZ3Q63HK5 1081 aa37.55■■■■□ 3.6
CTCF-203ENST00000566078 CDC5LQ99459 802 aaKnown RBP37.55■■■■□ 3.6
CTCF-203ENST00000566078 ZNF609O15014 1411 aa37.55■■■■□ 3.6
CTCF-203ENST00000566078 IGHMBP2P38935 993 aaKnown RBP37.54■■■■□ 3.6
CTCF-203ENST00000566078 STAP2Q9UGK3 403 aa37.54■■■■□ 3.6
CTCF-203ENST00000566078 RIPOR2Q9Y4F9 1068 aa37.54■■■■□ 3.6
CTCF-203ENST00000566078 PARP3Q9Y6F1 533 aa37.54■■■■□ 3.6
CTCF-203ENST00000566078 BMP2KLQ5H9B9 411 aa37.54■■■■□ 3.6
CTCF-203ENST00000566078 MPHOSPH8Q99549 860 aa37.54■■■■□ 3.6
CTCF-203ENST00000566078 CCDC8Q9H0W5 538 aaPredicted RBP37.53■■■■□ 3.6
CTCF-203ENST00000566078 CEP126Q9P2H0 1117 aa37.53■■■■□ 3.6
CTCF-203ENST00000566078 ARAP2Q8WZ64 1704 aa37.53■■■■□ 3.6
CTCF-203ENST00000566078 AOX1Q06278 1338 aa37.52■■■■□ 3.6
CTCF-203ENST00000566078 GSPT1P15170 499 aaKnown RBP37.51■■■■□ 3.6
CTCF-203ENST00000566078 METTL24Q5JXM2 366 aa37.51■■■■□ 3.6
CTCF-203ENST00000566078 PDGFDQ9GZP0 370 aaPredicted RBP37.51■■■■□ 3.6
CTCF-203ENST00000566078 GPR108Q9NPR9 543 aa37.51■■■■□ 3.6
CTCF-203ENST00000566078 TLR7Q9NYK1 1049 aaKnown RBP37.5■■■■□ 3.59
CTCF-203ENST00000566078 COL11A2P13942 1736 aaPredicted RBP37.5■■■■□ 3.59
CTCF-203ENST00000566078 ANKRD18AQ8IVF6 992 aa37.5■■■■□ 3.59
CTCF-203ENST00000566078 GPATCH3Q96I76 525 aa37.5■■■■□ 3.59
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms