RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 CWC25Q9NXE8 425 aaPredicted RBP21.63■■□□□ 1.05
CLK3-210ENST00000563112 FANCIQ9NVI1 1328 aa21.62■■□□□ 1.05
CLK3-210ENST00000563112 PPIP5K2O43314 1243 aa21.62■■□□□ 1.05
CLK3-210ENST00000563112 SLC4A2P04920 1241 aa21.62■■□□□ 1.05
CLK3-210ENST00000563112 NIM1KQ8IY84 436 aa21.62■■□□□ 1.05
CLK3-210ENST00000563112 GPC2Q8N158 579 aa21.62■■□□□ 1.05
CLK3-210ENST00000563112 MAP3K2Q9Y2U5 619 aa21.62■■□□□ 1.05
CLK3-210ENST00000563112 DDX60Q8IY21 1712 aaKnown RBP21.61■■□□□ 1.05
CLK3-210ENST00000563112 PCCAP05165 728 aaPredicted RBP21.61■■□□□ 1.05
CLK3-210ENST00000563112 NEXNQ0ZGT2 675 aa21.61■■□□□ 1.05
CLK3-210ENST00000563112 HACL1Q9UJ83 578 aa21.61■■□□□ 1.05
CLK3-210ENST00000563112 SCN4AP35499 1836 aa21.61■■□□□ 1.05
CLK3-210ENST00000563112 PI4KAP2A4QPH2 592 aa21.6■■□□□ 1.05
CLK3-210ENST00000563112 CHADLQ6NUI6 762 aa21.6■■□□□ 1.05
CLK3-210ENST00000563112 SLC51AQ86UW1 340 aa21.6■■□□□ 1.05
CLK3-210ENST00000563112 PI4KAP1Q8N8J0 262 aa21.6■■□□□ 1.05
CLK3-210ENST00000563112 RTFDC1Q9BY42 306 aaPredicted RBP21.6■■□□□ 1.05
CLK3-210ENST00000563112 GJA3Q9Y6H8 435 aa21.6■■□□□ 1.05
CLK3-210ENST00000563112 AOC3Q16853 763 aa21.59■■□□□ 1.05
CLK3-210ENST00000563112 TAF1DQ9H5J8 278 aaPredicted RBP21.59■■□□□ 1.05
CLK3-210ENST00000563112 MYH16Q9H6N6 1097 aa21.59■■□□□ 1.05
CLK3-210ENST00000563112 PDE8AO60658 829 aa21.57■■□□□ 1.04
CLK3-210ENST00000563112 LMOD1P29536 600 aaPredicted RBP21.57■■□□□ 1.04
CLK3-210ENST00000563112 EXOSC9Q06265 439 aaKnown RBP21.57■■□□□ 1.04
CLK3-210ENST00000563112 PNMA8AQ86V59 439 aaPredicted RBP21.57■■□□□ 1.04
CLK3-210ENST00000563112 LDHDQ86WU2 507 aa21.57■■□□□ 1.04
CLK3-210ENST00000563112 CELF1Q92879 486 aaKnown RBP21.57■■□□□ 1.04
CLK3-210ENST00000563112 TAF1P21675 1872 aa21.57■■□□□ 1.04
CLK3-210ENST00000563112 VAMP4O75379 141 aa21.56■■□□□ 1.04
CLK3-210ENST00000563112 EPHX2P34913 555 aa21.56■■□□□ 1.04
CLK3-210ENST00000563112 RPS8P62241 208 aaKnown RBP21.56■■□□□ 1.04
CLK3-210ENST00000563112 CCDC152Q4G0S7 254 aa21.56■■□□□ 1.04
CLK3-210ENST00000563112 EAPPQ56P03 285 aaPredicted RBP21.56■■□□□ 1.04
CLK3-210ENST00000563112 G2E3Q7L622 706 aa21.56■■□□□ 1.04
CLK3-210ENST00000563112 DNAJC5GQ8N7S2 189 aa21.56■■□□□ 1.04
CLK3-210ENST00000563112 ZNRF3Q9ULT6 936 aa21.56■■□□□ 1.04
CLK3-210ENST00000563112 CLEC11AQ9Y240 323 aa21.56■■□□□ 1.04
CLK3-210ENST00000563112 HTRA3P83110 453 aa21.55■■□□□ 1.04
CLK3-210ENST00000563112 KIAA2012Q0VF49 1180 aa21.55■■□□□ 1.04
CLK3-210ENST00000563112 FLIIQ13045 1269 aa21.55■■□□□ 1.04
CLK3-210ENST00000563112 JARID2Q92833 1246 aaPredicted RBP21.55■■□□□ 1.04
CLK3-210ENST00000563112 NSFL1CQ9UNZ2 370 aaKnown RBP21.55■■□□□ 1.04
CLK3-210ENST00000563112 COL4A5P29400 1685 aa21.55■■□□□ 1.04
CLK3-210ENST00000563112 CDHR2Q9BYE9 1310 aa21.55■■□□□ 1.04
CLK3-210ENST00000563112 CACNA1FO60840 1977 aa21.54■■□□□ 1.04
CLK3-210ENST00000563112 IGKV5-2P06315 115 aa21.54■■□□□ 1.04
CLK3-210ENST00000563112 POTEIP0CG38 1075 aa21.54■■□□□ 1.04
CLK3-210ENST00000563112 POTEJP0CG39 1038 aa21.54■■□□□ 1.04
CLK3-210ENST00000563112 FKBP5Q13451 457 aaPredicted RBP21.54■■□□□ 1.04
CLK3-210ENST00000563112 NEURL1BA8MQ27 555 aa21.52■■□□□ 1.04
CLK3-210ENST00000563112 KLRG1Q96E93 195 aa21.52■■□□□ 1.04
CLK3-210ENST00000563112 SEC31BQ9NQW1 1179 aa21.52■■□□□ 1.04
CLK3-210ENST00000563112 C6orf229H3BNL8 230 aa21.51■■□□□ 1.03
CLK3-210ENST00000563112 WASHC4Q2M389 1173 aa21.51■■□□□ 1.03
CLK3-210ENST00000563112 CWF19L2Q2TBE0 894 aaKnown RBP21.51■■□□□ 1.03
CLK3-210ENST00000563112 DNAAF4Q8WXU2 420 aa21.51■■□□□ 1.03
CLK3-210ENST00000563112 EYA3Q99504 573 aa21.51■■□□□ 1.03
CLK3-210ENST00000563112 SPINK5Q9NQ38 1064 aaPredicted RBP21.51■■□□□ 1.03
CLK3-210ENST00000563112 LRRC37AA6NMS7 1700 aa21.51■■□□□ 1.03
CLK3-210ENST00000563112 GPSM2P81274 684 aa21.5■■□□□ 1.03
CLK3-210ENST00000563112 CXCL9Q07325 125 aa21.5■■□□□ 1.03
CLK3-210ENST00000563112 TNIP1Q15025 636 aa21.5■■□□□ 1.03
CLK3-210ENST00000563112 CIAPIN1Q6FI81 312 aa21.5■■□□□ 1.03
CLK3-210ENST00000563112 CCDC85AQ96PX6 553 aaPredicted RBP21.5■■□□□ 1.03
CLK3-210ENST00000563112 ANKRD18AQ8IVF6 992 aa21.49■■□□□ 1.03
CLK3-210ENST00000563112 H7C1W4 665 aa21.48■■□□□ 1.03
CLK3-210ENST00000563112 SCNN1DP51172 638 aa21.48■■□□□ 1.03
CLK3-210ENST00000563112 CTSWP56202 376 aa21.48■■□□□ 1.03
CLK3-210ENST00000563112 LINS1Q8NG48 757 aa21.48■■□□□ 1.03
CLK3-210ENST00000563112 CDC5LQ99459 802 aaKnown RBP21.48■■□□□ 1.03
CLK3-210ENST00000563112 ANKIB1Q9P2G1 1089 aa21.48■■□□□ 1.03
CLK3-210ENST00000563112 RIMBP2O15034 1052 aa21.47■■□□□ 1.03
CLK3-210ENST00000563112 RAD17O75943 681 aa21.47■■□□□ 1.03
CLK3-210ENST00000563112 EPS15P42566 896 aa21.47■■□□□ 1.03
CLK3-210ENST00000563112 GCKRQ14397 625 aa21.47■■□□□ 1.03
CLK3-210ENST00000563112 UBE3BQ7Z3V4 1068 aa21.47■■□□□ 1.03
CLK3-210ENST00000563112 TBC1D16Q8TBP0 767 aa21.47■■□□□ 1.03
CLK3-210ENST00000563112 BCL2L13Q9BXK5 485 aa21.47■■□□□ 1.03
CLK3-210ENST00000563112 POLLQ9UGP5 575 aa21.47■■□□□ 1.03
CLK3-210ENST00000563112 DUOX1Q9NRD9 1551 aa21.46■■□□□ 1.03
CLK3-210ENST00000563112 USP50Q70EL3 339 aaPredicted RBP21.46■■□□□ 1.03
CLK3-210ENST00000563112 TTLL11Q8NHH1 800 aa21.46■■□□□ 1.03
CLK3-210ENST00000563112 ZC3H12CQ9C0D7 883 aaKnown RBP21.46■■□□□ 1.03
CLK3-210ENST00000563112 CREBZFQ9NS37 354 aa21.46■■□□□ 1.03
CLK3-210ENST00000563112 PODXL2Q9NZ53 605 aa21.46■■□□□ 1.03
CLK3-210ENST00000563112 GPRC5DQ9NZD1 345 aa21.46■■□□□ 1.03
CLK3-210ENST00000563112 G3V3G9 751 aa21.45■■□□□ 1.02
CLK3-210ENST00000563112 GMPSP49915 693 aaPredicted RBP21.45■■□□□ 1.02
CLK3-210ENST00000563112 DCAF8Q5TAQ9 597 aa21.45■■□□□ 1.02
CLK3-210ENST00000563112 CNTROBQ8N137 903 aa21.45■■□□□ 1.02
CLK3-210ENST00000563112 ADARB2Q9NS39 739 aaKnown RBP21.45■■□□□ 1.02
CLK3-210ENST00000563112 GGA1Q9UJY5 639 aa21.45■■□□□ 1.02
CLK3-210ENST00000563112 ZNF521Q96K83 1311 aa21.45■■□□□ 1.02
CLK3-210ENST00000563112 PASKQ96RG2 1323 aa21.45■■□□□ 1.02
CLK3-210ENST00000563112 COL4A1P02462 1669 aa21.44■■□□□ 1.02
CLK3-210ENST00000563112 UFL1O94874 794 aa21.44■■□□□ 1.02
CLK3-210ENST00000563112 ITGBL1O95965 494 aaPredicted RBP21.44■■□□□ 1.02
CLK3-210ENST00000563112 MAP1SQ66K74 1059 aaPredicted RBP21.44■■□□□ 1.02
CLK3-210ENST00000563112 DBNDD1Q9H9R9 158 aa21.44■■□□□ 1.02
CLK3-210ENST00000563112 ADAMTSL1Q8N6G6 1762 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 127.3 ms