RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 ANP32AP39687 249 aaKnown RBP26.09■■□□□ 1.77
CLN3-209ENST00000561689 LRRC24Q50LG9 513 aa26.09■■□□□ 1.77
CLN3-209ENST00000561689 RFC4P35249 363 aa26.09■■□□□ 1.77
CLN3-209ENST00000561689 MFAP1P55081 439 aaKnown RBP26.09■■□□□ 1.77
CLN3-209ENST00000561689 PI4K2BQ8TCG2 481 aa26.09■■□□□ 1.77
CLN3-209ENST00000561689 EYA2O00167 538 aa26.08■■□□□ 1.77
CLN3-209ENST00000561689 PUS3Q9BZE2 481 aaKnown RBP26.08■■□□□ 1.77
CLN3-209ENST00000561689 TLR7Q9NYK1 1049 aaKnown RBP26.08■■□□□ 1.77
CLN3-209ENST00000561689 BCORQ6W2J9 1755 aa26.08■■□□□ 1.77
CLN3-209ENST00000561689 RGL2O15211 777 aa26.07■■□□□ 1.76
CLN3-209ENST00000561689 ITGA6P23229 1130 aa26.07■■□□□ 1.76
CLN3-209ENST00000561689 TAF7LQ5H9L4 462 aa26.07■■□□□ 1.76
CLN3-209ENST00000561689 USP42Q9H9J4 1324 aaKnown RBP26.07■■□□□ 1.76
CLN3-209ENST00000561689 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.06■■□□□ 1.76
CLN3-209ENST00000561689 TRIM6-TRIM34B2RNG4 842 aa26.06■■□□□ 1.76
CLN3-209ENST00000561689 IL15P40933 162 aaPredicted RBP26.06■■□□□ 1.76
CLN3-209ENST00000561689 UPF2Q9HAU5 1272 aaKnown RBP26.06■■□□□ 1.76
CLN3-209ENST00000561689 ECHDC1Q9NTX5 307 aa26.06■■□□□ 1.76
CLN3-209ENST00000561689 TNNI3KQ59H18 835 aa26.06■■□□□ 1.76
CLN3-209ENST00000561689 RILPL2Q969X0 211 aa26.06■■□□□ 1.76
CLN3-209ENST00000561689 FPGT-TNNI3KV9GXZ4 949 aa26.06■■□□□ 1.76
CLN3-209ENST00000561689 TTC41PQ6P2S7 1318 aa26.05■■□□□ 1.76
CLN3-209ENST00000561689 CIAO1O76071 339 aa26.05■■□□□ 1.76
CLN3-209ENST00000561689 GPATCH3Q96I76 525 aa26.05■■□□□ 1.76
CLN3-209ENST00000561689 ANKRD18BA2A2Z9 1011 aa26.04■■□□□ 1.76
CLN3-209ENST00000561689 PLSCR1O15162 318 aa26.04■■□□□ 1.76
CLN3-209ENST00000561689 MAP4K4O95819 1239 aaPredicted RBP26.04■■□□□ 1.76
CLN3-209ENST00000561689 SETDB2Q96T68 719 aa26.04■■□□□ 1.76
CLN3-209ENST00000561689 ERFEQ4G0M1 354 aa26.04■■□□□ 1.76
CLN3-209ENST00000561689 SCN7AQ01118 1682 aa26.03■■□□□ 1.76
CLN3-209ENST00000561689 GLRX3O76003 335 aaKnown RBP26.02■■□□□ 1.76
CLN3-209ENST00000561689 ADRA2BP18089 450 aa26.02■■□□□ 1.76
CLN3-209ENST00000561689 ERC2O15083 957 aa26.02■■□□□ 1.76
CLN3-209ENST00000561689 DBNLQ9UJU6 430 aaKnown RBP26.01■■□□□ 1.75
CLN3-209ENST00000561689 HSP90B1P14625 803 aaKnown RBP26■■□□□ 1.75
CLN3-209ENST00000561689 GTF2E1P29083 439 aaPredicted RBP26■■□□□ 1.75
CLN3-209ENST00000561689 LDHAL6AQ6ZMR3 332 aa26■■□□□ 1.75
CLN3-209ENST00000561689 FBXO3Q9UK99 471 aa26■■□□□ 1.75
CLN3-209ENST00000561689 CASC1Q6TDU7 716 aa25.99■■□□□ 1.75
CLN3-209ENST00000561689 NBPF5PQ86XG9 351 aaPredicted RBP25.99■■□□□ 1.75
CLN3-209ENST00000561689 TBC1D32Q96NH3 1257 aa25.99■■□□□ 1.75
CLN3-209ENST00000561689 CEP126Q9P2H0 1117 aa25.99■■□□□ 1.75
CLN3-209ENST00000561689 SSFA2P28290 1259 aa25.98■■□□□ 1.75
CLN3-209ENST00000561689 TIMM10P62072 90 aa25.98■■□□□ 1.75
CLN3-209ENST00000561689 DBNDD2Q9BQY9 259 aa25.98■■□□□ 1.75
CLN3-209ENST00000561689 CCDC152Q4G0S7 254 aa25.98■■□□□ 1.75
CLN3-209ENST00000561689 NEUROD6Q96NK8 337 aa25.98■■□□□ 1.75
CLN3-209ENST00000561689 SEC31BQ9NQW1 1179 aa25.98■■□□□ 1.75
CLN3-209ENST00000561689 CNNM1Q9NRU3 951 aa25.98■■□□□ 1.75
CLN3-209ENST00000561689 C3orf67Q6ZVT6 689 aa25.97■■□□□ 1.75
CLN3-209ENST00000561689 C22orf23Q9BZE7 217 aa25.97■■□□□ 1.75
CLN3-209ENST00000561689 NYXQ9GZU5 481 aa25.97■■□□□ 1.75
CLN3-209ENST00000561689 GPR108Q9NPR9 543 aa25.97■■□□□ 1.75
CLN3-209ENST00000561689 RIPOR2Q9Y4F9 1068 aa25.97■■□□□ 1.75
CLN3-209ENST00000561689 ZNF827Q17R98 1081 aa25.96■■□□□ 1.75
CLN3-209ENST00000561689 CCDC24Q8N4L8 307 aa25.96■■□□□ 1.75
CLN3-209ENST00000561689 BOLA2Q9H3K6 86 aa25.96■■□□□ 1.75
CLN3-209ENST00000561689 C4AP0C0L4 1744 aa25.96■■□□□ 1.75
CLN3-209ENST00000561689 NFIXQ14938 502 aa25.95■■□□□ 1.75
CLN3-209ENST00000561689 CNTROBQ8N137 903 aa25.95■■□□□ 1.75
CLN3-209ENST00000561689 TFCP2L1Q9NZI6 479 aa25.95■■□□□ 1.75
CLN3-209ENST00000561689 ABCC12Q96J65 1359 aa25.95■■□□□ 1.74
CLN3-209ENST00000561689 MYH3P11055 1940 aa25.95■■□□□ 1.74
CLN3-209ENST00000561689 METTL24Q5JXM2 366 aa25.95■■□□□ 1.74
CLN3-209ENST00000561689 TPTE2Q6XPS3 522 aa25.95■■□□□ 1.74
CLN3-209ENST00000561689 A0A1B0GUL7 405 aa25.94■■□□□ 1.74
CLN3-209ENST00000561689 GYS1P13807 737 aa25.94■■□□□ 1.74
CLN3-209ENST00000561689 CHMLP26374 656 aa25.94■■□□□ 1.74
CLN3-209ENST00000561689 HMGB2P26583 209 aaKnown RBP25.94■■□□□ 1.74
CLN3-209ENST00000561689 DDX60Q8IY21 1712 aaKnown RBP25.94■■□□□ 1.74
CLN3-209ENST00000561689 UBR3Q6ZT12 1888 aa25.94■■□□□ 1.74
CLN3-209ENST00000561689 SLC10A5Q5PT55 438 aa25.93■■□□□ 1.74
CLN3-209ENST00000561689 IPO9Q96P70 1041 aaKnown RBP25.93■■□□□ 1.74
CLN3-209ENST00000561689 TUBGCP6Q96RT7 1819 aa25.93■■□□□ 1.74
CLN3-209ENST00000561689 ZNF609O15014 1411 aa25.92■■□□□ 1.74
CLN3-209ENST00000561689 AKT1S1Q96B36 256 aa25.92■■□□□ 1.74
CLN3-209ENST00000561689 RIC1Q4ADV7 1423 aa25.92■■□□□ 1.74
CLN3-209ENST00000561689 NPHP1O15259 732 aa25.91■■□□□ 1.74
CLN3-209ENST00000561689 ATP5JP18859 108 aa25.91■■□□□ 1.74
CLN3-209ENST00000561689 MPHOSPH8Q99549 860 aa25.91■■□□□ 1.74
CLN3-209ENST00000561689 ANP32EQ9BTT0 268 aa25.91■■□□□ 1.74
CLN3-209ENST00000561689 AKAP2Q9Y2D5 859 aa25.91■■□□□ 1.74
CLN3-209ENST00000561689 CARMIL3Q8ND23 1372 aa25.91■■□□□ 1.74
CLN3-209ENST00000561689 RTL9Q8NET4 1388 aa25.91■■□□□ 1.74
CLN3-209ENST00000561689 SF3B3Q15393 1217 aaKnown RBP25.91■■□□□ 1.74
CLN3-209ENST00000561689 EVI5LQ96CN4 794 aa25.89■■□□□ 1.74
CLN3-209ENST00000561689 VGLL2Q8N8G2 317 aa25.89■■□□□ 1.73
CLN3-209ENST00000561689 NLRP3Q96P20 1036 aa25.89■■□□□ 1.73
CLN3-209ENST00000561689 ESYT1Q9BSJ8 1104 aa25.89■■□□□ 1.73
CLN3-209ENST00000561689 COL24A1Q17RW2 1714 aa25.88■■□□□ 1.73
CLN3-209ENST00000561689 ADORA1P30542 326 aa25.88■■□□□ 1.73
CLN3-209ENST00000561689 IGHMBP2P38935 993 aaKnown RBP25.88■■□□□ 1.73
CLN3-209ENST00000561689 HELBQ8NG08 1087 aaPredicted RBP25.88■■□□□ 1.73
CLN3-209ENST00000561689 NDUFB9Q9Y6M9 179 aa25.88■■□□□ 1.73
CLN3-209ENST00000561689 EIF5BO60841 1220 aaKnown RBP25.87■■□□□ 1.73
CLN3-209ENST00000561689 ATP2B3Q16720 1220 aa25.87■■□□□ 1.73
CLN3-209ENST00000561689 XAGE2Q96GT9 111 aa25.87■■□□□ 1.73
CLN3-209ENST00000561689 TNS1Q9HBL0 1735 aaKnown RBP25.87■■□□□ 1.73
CLN3-209ENST00000561689 LAMB2P55268 1798 aa25.87■■□□□ 1.73
CLN3-209ENST00000561689 PDE8BO95263 885 aa25.87■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms