RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 CAPNS2Q96L46 248 aa15.08■□□□□ 0
LDLR-212ENST00000560467 ERBB4Q15303 1308 aa15.08■□□□□ 0
LDLR-212ENST00000560467 PDIA6Q15084 440 aa15.07■□□□□ 0
LDLR-212ENST00000560467 GRIPAP1Q4V328 841 aa15.07■□□□□ 0
LDLR-212ENST00000560467 PARP10Q53GL7 1025 aa15.07■□□□□ 0
LDLR-212ENST00000560467 DUSP27Q5VZP5 1158 aa15.07■□□□□ 0
LDLR-212ENST00000560467 CST9Q5W186 159 aa15.07■□□□□ 0
LDLR-212ENST00000560467 CYP4F22Q6NT55 531 aa15.07■□□□□ 0
LDLR-212ENST00000560467 USP50Q70EL3 339 aaPredicted RBP15.07■□□□□ 0
LDLR-212ENST00000560467 PPP1R42Q7Z4L9 355 aa15.07■□□□□ 0
LDLR-212ENST00000560467 TRMT2AQ8IZ69 625 aaKnown RBP15.07■□□□□ 0
LDLR-212ENST00000560467 TSPYL4Q9UJ04 414 aa15.07■□□□□ 0
LDLR-212ENST00000560467 RCAN3Q9UKA8 241 aa15.07■□□□□ 0
LDLR-212ENST00000560467 ATP6V0A2Q9Y487 856 aa15.07■□□□□ 0
LDLR-212ENST00000560467 ABCC4O15439 1325 aa15.07■□□□□ 0
LDLR-212ENST00000560467 EIF2S2P20042 333 aaKnown RBP15.06■□□□□ 0
LDLR-212ENST00000560467 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.06■□□□□ 0
LDLR-212ENST00000560467 ABHD8Q96I13 439 aa15.06■□□□□ 0
LDLR-212ENST00000560467 NLRP3Q96P20 1036 aa15.06■□□□□ 0
LDLR-212ENST00000560467 UTP14AQ9BVJ6 771 aaKnown RBP15.06■□□□□ 0
LDLR-212ENST00000560467 GPRC5DQ9NZD1 345 aa15.06■□□□□ 0
LDLR-212ENST00000560467 GMPSP49915 693 aaPredicted RBP15.05■□□□□ -0
LDLR-212ENST00000560467 CXCL9Q07325 125 aa15.05■□□□□ -0
LDLR-212ENST00000560467 FANCIQ9NVI1 1328 aa15.04■□□□□ -0
LDLR-212ENST00000560467 CHL1O00533 1208 aa15.04■□□□□ -0
LDLR-212ENST00000560467 HCLS1P14317 486 aaPredicted RBP15.04■□□□□ -0
LDLR-212ENST00000560467 ECE1P42892 770 aa15.04■□□□□ -0
LDLR-212ENST00000560467 SLC10A5Q5PT55 438 aa15.04■□□□□ -0
LDLR-212ENST00000560467 TSR2Q969E8 191 aaKnown RBP15.04■□□□□ -0
LDLR-212ENST00000560467 ZNF428Q96B54 188 aa15.04■□□□□ -0
LDLR-212ENST00000560467 GPR101Q96P66 508 aaPredicted RBP15.04■□□□□ -0
LDLR-212ENST00000560467 TMX4Q9H1E5 349 aaPredicted RBP15.04■□□□□ -0
LDLR-212ENST00000560467 ADARB2Q9NS39 739 aaKnown RBP15.04■□□□□ -0
LDLR-212ENST00000560467 TSKSQ9UJT2 592 aa15.04■□□□□ -0
LDLR-212ENST00000560467 ZNRF3Q9ULT6 936 aa15.04■□□□□ -0
LDLR-212ENST00000560467 TLL2Q9Y6L7 1015 aa15.04■□□□□ -0
LDLR-212ENST00000560467 NUP98P52948 1817 aa15.03■□□□□ -0
LDLR-212ENST00000560467 AOC2O75106 756 aa15.03■□□□□ -0
LDLR-212ENST00000560467 ZNF853P0CG23 659 aa15.03■□□□□ -0
LDLR-212ENST00000560467 DPP8Q6V1X1 898 aaPredicted RBP15.03■□□□□ -0
LDLR-212ENST00000560467 NECTIN2Q92692 538 aa15.03■□□□□ -0
LDLR-212ENST00000560467 RTFDC1Q9BY42 306 aaPredicted RBP15.03■□□□□ -0
LDLR-212ENST00000560467 GLIS2Q9BZE0 524 aaPredicted RBP15.03■□□□□ -0
LDLR-212ENST00000560467 MBIPQ9NS73 344 aa15.03■□□□□ -0
LDLR-212ENST00000560467 THSD7BQ9C0I4 1608 aa15.03■□□□□ -0
LDLR-212ENST00000560467 RAD17O75943 681 aa15.02■□□□□ -0
LDLR-212ENST00000560467 CELF2O95319 508 aaKnown RBP15.02■□□□□ -0
LDLR-212ENST00000560467 AIMP1Q12904 312 aaKnown RBP15.02■□□□□ -0
LDLR-212ENST00000560467 NLRP10Q86W26 655 aa15.02■□□□□ -0
LDLR-212ENST00000560467 SUPT20HQ8NEM7 779 aa15.02■□□□□ -0
LDLR-212ENST00000560467 XAGE3Q8WTP9 111 aa15.02■□□□□ -0
LDLR-212ENST00000560467 SPINK5Q9NQ38 1064 aaPredicted RBP15.02■□□□□ -0
LDLR-212ENST00000560467 SHTN1A0MZ66 631 aa15.01□□□□□ -0.01
LDLR-212ENST00000560467 EXOSC9Q06265 439 aaKnown RBP15.01□□□□□ -0.01
LDLR-212ENST00000560467 KIAA2012Q0VF49 1180 aa15.01□□□□□ -0.01
LDLR-212ENST00000560467 COPS6Q7L5N1 327 aa15.01□□□□□ -0.01
LDLR-212ENST00000560467 SP8Q8IXZ3 490 aa15.01□□□□□ -0.01
LDLR-212ENST00000560467 MPNDQ8N594 471 aa15.01□□□□□ -0.01
LDLR-212ENST00000560467 TRPM4Q8TD43 1214 aa15.01□□□□□ -0.01
LDLR-212ENST00000560467 BEGAINQ9BUH8 593 aa15.01□□□□□ -0.01
LDLR-212ENST00000560467 VPS33BQ9H267 617 aa15.01□□□□□ -0.01
LDLR-212ENST00000560467 SUPT16HQ9Y5B9 1047 aaKnown RBP15.01□□□□□ -0.01
LDLR-212ENST00000560467 DLG5Q8TDM6 1919 aa15.01□□□□□ -0.01
LDLR-212ENST00000560467 BBOX1O75936 387 aa15□□□□□ -0.01
LDLR-212ENST00000560467 HIRAP54198 1017 aaPredicted RBP15□□□□□ -0.01
LDLR-212ENST00000560467 KRT24Q2M2I5 525 aa15□□□□□ -0.01
LDLR-212ENST00000560467 FAM161AQ3B820 660 aa15□□□□□ -0.01
LDLR-212ENST00000560467 CIAPIN1Q6FI81 312 aa15□□□□□ -0.01
LDLR-212ENST00000560467 SAPCD2Q86UD0 394 aa15□□□□□ -0.01
LDLR-212ENST00000560467 BCL2L13Q9BXK5 485 aa15□□□□□ -0.01
LDLR-212ENST00000560467 ZNF408Q9H9D4 720 aa15□□□□□ -0.01
LDLR-212ENST00000560467 YDJCA8MPS7 323 aa14.99□□□□□ -0.01
LDLR-212ENST00000560467 GRAPQ13588 217 aa14.99□□□□□ -0.01
LDLR-212ENST00000560467 TWISTNBQ3B726 338 aaPredicted RBP14.99□□□□□ -0.01
LDLR-212ENST00000560467 DDX46Q7L014 1031 aaKnown RBP14.99□□□□□ -0.01
LDLR-212ENST00000560467 GRAPLQ8TC17 118 aaPredicted RBP14.99□□□□□ -0.01
LDLR-212ENST00000560467 TRMT112Q9UI30 125 aaKnown RBP14.99□□□□□ -0.01
LDLR-212ENST00000560467 SH3TC1Q8TE82 1336 aa14.98□□□□□ -0.01
LDLR-212ENST00000560467 CCDC85CA6NKD9 419 aa14.98□□□□□ -0.01
LDLR-212ENST00000560467 TCIRG1Q13488 830 aa14.98□□□□□ -0.01
LDLR-212ENST00000560467 HSP90AB3PQ58FF7 597 aa14.98□□□□□ -0.01
LDLR-212ENST00000560467 PGAP2Q9UHJ9 254 aa14.98□□□□□ -0.01
LDLR-212ENST00000560467 CDHR2Q9BYE9 1310 aa14.97□□□□□ -0.01
LDLR-212ENST00000560467 IPO8O15397 1037 aaKnown RBP14.97□□□□□ -0.01
LDLR-212ENST00000560467 MS4A1P11836 297 aa14.97□□□□□ -0.01
LDLR-212ENST00000560467 MAP2K2P36507 400 aa14.97□□□□□ -0.01
LDLR-212ENST00000560467 TNIP1Q15025 636 aa14.97□□□□□ -0.01
LDLR-212ENST00000560467 DLK2Q6UY11 383 aa14.97□□□□□ -0.01
LDLR-212ENST00000560467 DUOX1Q9NRD9 1551 aa14.97□□□□□ -0.01
LDLR-212ENST00000560467 ELL2O00472 640 aaPredicted RBP14.96□□□□□ -0.01
LDLR-212ENST00000560467 ALDH1L2Q3SY69 923 aa14.96□□□□□ -0.01
LDLR-212ENST00000560467 MICALL2Q8IY33 904 aa14.96□□□□□ -0.01
LDLR-212ENST00000560467 STK31Q9BXU1 1019 aa14.96□□□□□ -0.01
LDLR-212ENST00000560467 CHPF2Q9P2E5 772 aa14.96□□□□□ -0.01
LDLR-212ENST00000560467 CNOT7Q9UIV1 285 aaKnown RBP14.96□□□□□ -0.01
LDLR-212ENST00000560467 ZBTB12Q9Y330 459 aaPredicted RBP14.96□□□□□ -0.01
LDLR-212ENST00000560467 USP48Q86UV5 1035 aa14.95□□□□□ -0.02
LDLR-212ENST00000560467 ZC3H15Q8WU90 426 aaKnown RBP14.95□□□□□ -0.02
LDLR-212ENST00000560467 ZIC5Q96T25 663 aa14.95□□□□□ -0.02
LDLR-212ENST00000560467 SMC4Q9NTJ3 1288 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 123.2 ms