RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 TTLL6Q8N841 843 aa12.64□□□□□ -0.39
USP3-216ENST00000559873 PANK1Q8TE04 598 aa12.64□□□□□ -0.39
USP3-216ENST00000559873 JARID2Q92833 1246 aaPredicted RBP12.64□□□□□ -0.39
USP3-216ENST00000559873 USP44Q9H0E7 712 aa12.64□□□□□ -0.39
USP3-216ENST00000559873 TMX4Q9H1E5 349 aaPredicted RBP12.64□□□□□ -0.39
USP3-216ENST00000559873 TNNQ9UQP3 1299 aa12.64□□□□□ -0.39
USP3-216ENST00000559873 RTL9Q8NET4 1388 aa12.64□□□□□ -0.39
USP3-216ENST00000559873 MYH3P11055 1940 aa12.64□□□□□ -0.39
USP3-216ENST00000559873 PLIN1O60240 522 aa12.63□□□□□ -0.39
USP3-216ENST00000559873 SOGA3Q5TF21 947 aa12.63□□□□□ -0.39
USP3-216ENST00000559873 TMC4Q7Z404 712 aa12.63□□□□□ -0.39
USP3-216ENST00000559873 CRAMP1Q96RY5 1269 aa12.63□□□□□ -0.39
USP3-216ENST00000559873 CDC5LQ99459 802 aaKnown RBP12.63□□□□□ -0.39
USP3-216ENST00000559873 CHMP3Q9Y3E7 222 aa12.63□□□□□ -0.39
USP3-216ENST00000559873 GNAI2P04899 355 aa12.62□□□□□ -0.39
USP3-216ENST00000559873 RLBP1P12271 317 aa12.62□□□□□ -0.39
USP3-216ENST00000559873 GRAPQ13588 217 aa12.62□□□□□ -0.39
USP3-216ENST00000559873 C3orf67Q6ZVT6 689 aa12.62□□□□□ -0.39
USP3-216ENST00000559873 PELP1Q8IZL8 1130 aaKnown RBP12.62□□□□□ -0.39
USP3-216ENST00000559873 TTLL11Q8NHH1 800 aa12.62□□□□□ -0.39
USP3-216ENST00000559873 GRAPLQ8TC17 118 aaPredicted RBP12.62□□□□□ -0.39
USP3-216ENST00000559873 MEIS3Q99687 375 aa12.62□□□□□ -0.39
USP3-216ENST00000559873 BCS1LQ9Y276 419 aa12.62□□□□□ -0.39
USP3-216ENST00000559873 BRCA1P38398 1863 aaKnown RBP12.61□□□□□ -0.39
USP3-216ENST00000559873 PPEF1O14829 653 aaPredicted RBP12.61□□□□□ -0.39
USP3-216ENST00000559873 BBOX1O75936 387 aa12.61□□□□□ -0.39
USP3-216ENST00000559873 IFIT5Q13325 482 aaKnown RBP12.61□□□□□ -0.39
USP3-216ENST00000559873 CCDC57Q2TAC2 916 aa12.61□□□□□ -0.39
USP3-216ENST00000559873 FAM161AQ3B820 660 aa12.61□□□□□ -0.39
USP3-216ENST00000559873 PRPF40BQ6NWY9 871 aaKnown RBP12.61□□□□□ -0.39
USP3-216ENST00000559873 SUCLG2Q96I99 432 aa12.61□□□□□ -0.39
USP3-216ENST00000559873 COG6Q9Y2V7 657 aa12.61□□□□□ -0.39
USP3-216ENST00000559873 ANKRD18BA2A2Z9 1011 aa12.6□□□□□ -0.39
USP3-216ENST00000559873 GRIN3BO60391 1043 aa12.6□□□□□ -0.39
USP3-216ENST00000559873 CSF1RP07333 972 aa12.6□□□□□ -0.39
USP3-216ENST00000559873 KCNA3P22001 575 aa12.6□□□□□ -0.39
USP3-216ENST00000559873 IGHMBP2P38935 993 aaKnown RBP12.6□□□□□ -0.39
USP3-216ENST00000559873 GPR162Q16538 588 aa12.6□□□□□ -0.39
USP3-216ENST00000559873 RABL6Q3YEC7 729 aaPredicted RBP12.6□□□□□ -0.39
USP3-216ENST00000559873 GRIPAP1Q4V328 841 aa12.6□□□□□ -0.39
USP3-216ENST00000559873 TAF7LQ5H9L4 462 aa12.6□□□□□ -0.39
USP3-216ENST00000559873 CC2D2BQ6DHV5 1058 aa12.6□□□□□ -0.39
USP3-216ENST00000559873 LMBR1LQ6UX01 489 aa12.6□□□□□ -0.39
USP3-216ENST00000559873 ANKRD18AQ8IVF6 992 aa12.6□□□□□ -0.39
USP3-216ENST00000559873 CCDC85AQ96PX6 553 aaPredicted RBP12.6□□□□□ -0.39
USP3-216ENST00000559873 BICC1Q9H694 974 aaKnown RBP12.6□□□□□ -0.39
USP3-216ENST00000559873 LRRFIP2Q9Y608 721 aaKnown RBP12.6□□□□□ -0.39
USP3-216ENST00000559873 ITGA6P23229 1130 aa12.59□□□□□ -0.39
USP3-216ENST00000559873 FOXO4P98177 505 aa12.59□□□□□ -0.39
USP3-216ENST00000559873 GREM2Q9H772 168 aa12.59□□□□□ -0.39
USP3-216ENST00000559873 ARFGEF1Q9Y6D6 1849 aa12.58□□□□□ -0.4
USP3-216ENST00000559873 ZBTB7BO15156 539 aaPredicted RBP12.58□□□□□ -0.4
USP3-216ENST00000559873 RPS8P62241 208 aaKnown RBP12.58□□□□□ -0.4
USP3-216ENST00000559873 CCDC93Q567U6 631 aa12.58□□□□□ -0.4
USP3-216ENST00000559873 EPHA10Q5JZY3 1008 aa12.58□□□□□ -0.4
USP3-216ENST00000559873 MPHOSPH8Q99549 860 aa12.58□□□□□ -0.4
USP3-216ENST00000559873 WWC3Q9ULE0 1092 aa12.58□□□□□ -0.4
USP3-216ENST00000559873 SUPT16HQ9Y5B9 1047 aaKnown RBP12.58□□□□□ -0.4
USP3-216ENST00000559873 AAMPQ13685 434 aa12.57□□□□□ -0.4
USP3-216ENST00000559873 C20orf194Q5TEA3 1177 aa12.57□□□□□ -0.4
USP3-216ENST00000559873 ANKRD44Q8N8A2 993 aa12.57□□□□□ -0.4
USP3-216ENST00000559873 CELF1Q92879 486 aaKnown RBP12.57□□□□□ -0.4
USP3-216ENST00000559873 KAZALD1Q96I82 304 aa12.57□□□□□ -0.4
USP3-216ENST00000559873 SEC31BQ9NQW1 1179 aa12.57□□□□□ -0.4
USP3-216ENST00000559873 ATP6V0A2Q9Y487 856 aa12.57□□□□□ -0.4
USP3-216ENST00000559873 CACNA1SQ13698 1873 aa12.57□□□□□ -0.4
USP3-216ENST00000559873 C21orf2O43822 256 aa12.56□□□□□ -0.4
USP3-216ENST00000559873 MTX1Q13505 466 aa12.56□□□□□ -0.4
USP3-216ENST00000559873 SP8Q8IXZ3 490 aa12.56□□□□□ -0.4
USP3-216ENST00000559873 RTKN2Q8IZC4 609 aa12.56□□□□□ -0.4
USP3-216ENST00000559873 LRRC37AA6NMS7 1700 aa12.55□□□□□ -0.4
USP3-216ENST00000559873 SRGAP3O43295 1099 aa12.55□□□□□ -0.4
USP3-216ENST00000559873 HMMRO75330 724 aa12.55□□□□□ -0.4
USP3-216ENST00000559873 C1orf115Q9H7X2 142 aa12.55□□□□□ -0.4
USP3-216ENST00000559873 BSDC1Q9NW68 430 aaPredicted RBP12.55□□□□□ -0.4
USP3-216ENST00000559873 ZNF219Q9P2Y4 722 aaPredicted RBP12.55□□□□□ -0.4
USP3-216ENST00000559873 FBXO3Q9UK99 471 aa12.55□□□□□ -0.4
USP3-216ENST00000559873 SLX4Q8IY92 1834 aa12.55□□□□□ -0.4
USP3-216ENST00000559873 YBX3P16989 372 aaKnown RBP eCLIP12.54□□□□□ -0.43e-6■■■□□ 16.3
USP3-216ENST00000559873 LDHAL6AQ6ZMR3 332 aa12.54□□□□□ -0.4
USP3-216ENST00000559873 RPAP2Q8IXW5 612 aaPredicted RBP12.54□□□□□ -0.4
USP3-216ENST00000559873 SUPT20HQ8NEM7 779 aa12.54□□□□□ -0.4
USP3-216ENST00000559873 ANKRD2Q9GZV1 360 aa12.54□□□□□ -0.4
USP3-216ENST00000559873 TAOK3Q9H2K8 898 aa12.54□□□□□ -0.4
USP3-216ENST00000559873 CNNM1Q9NRU3 951 aa12.54□□□□□ -0.4
USP3-216ENST00000559873 ZBTB40Q9NUA8 1239 aa12.54□□□□□ -0.4
USP3-216ENST00000559873 XDHP47989 1333 aa12.54□□□□□ -0.4
USP3-216ENST00000559873 NEFLP07196 543 aa12.53□□□□□ -0.4
USP3-216ENST00000559873 DPP8Q6V1X1 898 aaPredicted RBP12.53□□□□□ -0.4
USP3-216ENST00000559873 MPNDQ8N594 471 aa12.53□□□□□ -0.4
USP3-216ENST00000559873 C7orf43Q8WVR3 580 aa12.53□□□□□ -0.4
USP3-216ENST00000559873 CRBNQ96SW2 442 aa12.53□□□□□ -0.4
USP3-216ENST00000559873 ANKIB1Q9P2G1 1089 aa12.53□□□□□ -0.4
USP3-216ENST00000559873 MROH5Q6ZUA9 1318 aa12.53□□□□□ -0.4
USP3-216ENST00000559873 LTBP3Q9NS15 1303 aa12.53□□□□□ -0.4
USP3-216ENST00000559873 ATP8B2P98198 1209 aa12.52□□□□□ -0.41
USP3-216ENST00000559873 FKBP4Q02790 459 aaKnown RBP eCLIP12.52□□□□□ -0.41
USP3-216ENST00000559873 CEP85Q6P2H3 762 aa12.52□□□□□ -0.41
USP3-216ENST00000559873 ARHGAP27Q6ZUM4 889 aa12.52□□□□□ -0.41
USP3-216ENST00000559873 PSMD1Q99460 953 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms