RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.91□□□□□ -0.34
USP3-206ENST00000558157 PLCD3Q8N3E9 789 aa12.91□□□□□ -0.34
USP3-206ENST00000558157 GJD4Q96KN9 370 aaPredicted RBP12.91□□□□□ -0.34
USP3-206ENST00000558157 API5Q9BZZ5 524 aaKnown RBP12.91□□□□□ -0.34
USP3-206ENST00000558157 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.91□□□□□ -0.34
USP3-206ENST00000558157 FMNL2Q96PY5 1086 aa12.91□□□□□ -0.34
USP3-206ENST00000558157 YY1AP1Q9H869 796 aa12.91□□□□□ -0.34
USP3-206ENST00000558157 TRPC5Q9UL62 973 aaPredicted RBP12.91□□□□□ -0.34
USP3-206ENST00000558157 BCL9O00512 1426 aa12.9□□□□□ -0.34
USP3-206ENST00000558157 TNNT1P13805 278 aa12.9□□□□□ -0.34
USP3-206ENST00000558157 CAPN2P17655 700 aa12.9□□□□□ -0.34
USP3-206ENST00000558157 FOXD4L5Q5VV16 416 aaPredicted RBP12.9□□□□□ -0.34
USP3-206ENST00000558157 FOXD4L4Q8WXT5 416 aaPredicted RBP12.9□□□□□ -0.34
USP3-206ENST00000558157 PIGBQ92521 554 aa12.9□□□□□ -0.34
USP3-206ENST00000558157 CHPF2Q9P2E5 772 aa12.9□□□□□ -0.34
USP3-206ENST00000558157 CCDC192P0DO97 292 aa12.9□□□□□ -0.34
USP3-206ENST00000558157 TEX2Q8IWB9 1127 aa12.9□□□□□ -0.34
USP3-206ENST00000558157 KIF1BPQ96EK5 621 aa12.9□□□□□ -0.34
USP3-206ENST00000558157 C1orf115Q9H7X2 142 aa12.9□□□□□ -0.34
USP3-206ENST00000558157 KAT6BQ8WYB5 2073 aa12.9□□□□□ -0.34
USP3-206ENST00000558157 PTPRCP08575 1304 aa12.9□□□□□ -0.34
USP3-206ENST00000558157 CYP2C19P33261 490 aa12.89□□□□□ -0.35
USP3-206ENST00000558157 FLIIQ13045 1269 aa12.89□□□□□ -0.35
USP3-206ENST00000558157 RPAP2Q8IXW5 612 aaPredicted RBP12.89□□□□□ -0.35
USP3-206ENST00000558157 SYTL4Q96C24 671 aaPredicted RBP12.89□□□□□ -0.35
USP3-206ENST00000558157 ACSBG1Q96GR2 724 aa12.89□□□□□ -0.35
USP3-206ENST00000558157 OSBPL3Q9H4L5 887 aa12.89□□□□□ -0.35
USP3-206ENST00000558157 ANXA1P04083 346 aa12.88□□□□□ -0.35
USP3-206ENST00000558157 SNRPA1P09661 255 aaKnown RBP12.88□□□□□ -0.35
USP3-206ENST00000558157 ANKRD44Q8N8A2 993 aa12.88□□□□□ -0.35
USP3-206ENST00000558157 FAM200AQ8TCP9 573 aa12.88□□□□□ -0.35
USP3-206ENST00000558157 CCDC171Q6TFL3 1326 aa12.88□□□□□ -0.35
USP3-206ENST00000558157 CHRM1P11229 460 aaPredicted RBP12.88□□□□□ -0.35
USP3-206ENST00000558157 ERO1AQ96HE7 468 aa12.88□□□□□ -0.35
USP3-206ENST00000558157 QTRT2Q9H974 415 aaKnown RBP12.88□□□□□ -0.35
USP3-206ENST00000558157 ASAP1Q9ULH1 1129 aa12.88□□□□□ -0.35
USP3-206ENST00000558157 N4BP2Q86UW6 1770 aaPredicted RBP12.87□□□□□ -0.35
USP3-206ENST00000558157 PTCD1O75127 700 aaKnown RBP12.87□□□□□ -0.35
USP3-206ENST00000558157 BMS1Q14692 1282 aaKnown RBP12.87□□□□□ -0.35
USP3-206ENST00000558157 PROSER3Q2NL68 480 aa12.87□□□□□ -0.35
USP3-206ENST00000558157 KMT5BQ4FZB7 885 aa12.87□□□□□ -0.35
USP3-206ENST00000558157 FBXO41Q8TF61 875 aa12.87□□□□□ -0.35
USP3-206ENST00000558157 CHMP4AQ9BY43 222 aa12.87□□□□□ -0.35
USP3-206ENST00000558157 PHAXQ9H814 394 aaKnown RBP12.87□□□□□ -0.35
USP3-206ENST00000558157 ATG3Q9NT62 314 aa12.87□□□□□ -0.35
USP3-206ENST00000558157 AP5Z1O43299 807 aa12.87□□□□□ -0.35
USP3-206ENST00000558157 SMARCA5O60264 1052 aaPredicted RBP12.87□□□□□ -0.35
USP3-206ENST00000558157 NEMFO60524 1076 aa12.87□□□□□ -0.35
USP3-206ENST00000558157 PLCB2Q00722 1185 aa12.87□□□□□ -0.35
USP3-206ENST00000558157 CTR9Q6PD62 1173 aa12.87□□□□□ -0.35
USP3-206ENST00000558157 C16orf45Q96MC5 204 aaPredicted RBP12.87□□□□□ -0.35
USP3-206ENST00000558157 SRCIN1Q9C0H9 1055 aa12.87□□□□□ -0.35
USP3-206ENST00000558157 FEZ2Q9UHY8 353 aaPredicted RBP12.87□□□□□ -0.35
USP3-206ENST00000558157 TRIM6-TRIM34B2RNG4 842 aa12.86□□□□□ -0.35
USP3-206ENST00000558157 PTGS1P23219 599 aa12.86□□□□□ -0.35
USP3-206ENST00000558157 SPC24Q8NBT2 197 aa12.86□□□□□ -0.35
USP3-206ENST00000558157 NOL10Q9BSC4 688 aaKnown RBP12.86□□□□□ -0.35
USP3-206ENST00000558157 TRIM34Q9BYJ4 488 aa12.86□□□□□ -0.35
USP3-206ENST00000558157 GDPD2Q9HCC8 539 aa12.86□□□□□ -0.35
USP3-206ENST00000558157 DBF4Q9UBU7 674 aaPredicted RBP12.86□□□□□ -0.35
USP3-206ENST00000558157 USP16Q9Y5T5 823 aa12.86□□□□□ -0.35
USP3-206ENST00000558157 F6X3S4 739 aa12.86□□□□□ -0.35
USP3-206ENST00000558157 ZSCAN22P10073 491 aaPredicted RBP12.86□□□□□ -0.35
USP3-206ENST00000558157 MUM1L1Q5H9M0 696 aa12.86□□□□□ -0.35
USP3-206ENST00000558157 CEP135Q66GS9 1140 aa12.86□□□□□ -0.35
USP3-206ENST00000558157 KIF2AO00139 706 aaPredicted RBP12.85□□□□□ -0.35
USP3-206ENST00000558157 TJP1Q07157 1748 aa12.85□□□□□ -0.35
USP3-206ENST00000558157 NHSQ6T4R5 1651 aa12.85□□□□□ -0.35
USP3-206ENST00000558157 PDIA6Q15084 440 aa12.84□□□□□ -0.35
USP3-206ENST00000558157 SEPT12Q8IYM1 358 aa12.84□□□□□ -0.35
USP3-206ENST00000558157 RGS22Q8NE09 1264 aa12.84□□□□□ -0.35
USP3-206ENST00000558157 ATP10DQ9P241 1426 aa12.84□□□□□ -0.35
USP3-206ENST00000558157 BRWD3Q6RI45 1802 aa12.84□□□□□ -0.35
USP3-206ENST00000558157 ONECUT3O60422 494 aaPredicted RBP12.84□□□□□ -0.35
USP3-206ENST00000558157 CDC25BP30305 580 aa12.84□□□□□ -0.35
USP3-206ENST00000558157 RBM6P78332 1123 aaKnown RBP12.84□□□□□ -0.35
USP3-206ENST00000558157 TPD52L1Q16890 204 aaPredicted RBP12.84□□□□□ -0.35
USP3-206ENST00000558157 TEX35Q5T0J7 233 aa12.84□□□□□ -0.35
USP3-206ENST00000558157 ZSCAN25Q6NSZ9 544 aa12.84□□□□□ -0.35
USP3-206ENST00000558157 DDX21Q9NR30 783 aaKnown RBP eCLIP12.84□□□□□ -0.35
USP3-206ENST00000558157 PXDNLA1KZ92 1463 aa12.84□□□□□ -0.35
USP3-206ENST00000558157 ERICH4A6NGS2 130 aa12.83□□□□□ -0.35
USP3-206ENST00000558157 PIP4K2AP48426 406 aaPredicted RBP12.83□□□□□ -0.35
USP3-206ENST00000558157 FAM182BQ5T319 152 aa12.83□□□□□ -0.35
USP3-206ENST00000558157 CCDC186Q7Z3E2 898 aa12.83□□□□□ -0.35
USP3-206ENST00000558157 TXLNBQ8N3L3 684 aa12.83□□□□□ -0.35
USP3-206ENST00000558157 GEMIN8Q9NWZ8 242 aaKnown RBP12.83□□□□□ -0.35
USP3-206ENST00000558157 CNPY2Q9Y2B0 182 aa12.83□□□□□ -0.35
USP3-206ENST00000558157 KCNQ2O43526 872 aa12.83□□□□□ -0.36
USP3-206ENST00000558157 MYL6BP14649 208 aa12.83□□□□□ -0.36
USP3-206ENST00000558157 GIMAP6Q6P9H5 292 aa12.83□□□□□ -0.36
USP3-206ENST00000558157 SLC4A10Q6U841 1118 aa12.83□□□□□ -0.36
USP3-206ENST00000558157 PLA2G4DQ86XP0 818 aa12.83□□□□□ -0.36
USP3-206ENST00000558157 C16orf71Q8IYS4 520 aaPredicted RBP12.83□□□□□ -0.36
USP3-206ENST00000558157 ESYT1Q9BSJ8 1104 aa12.83□□□□□ -0.36
USP3-206ENST00000558157 KCND1Q9NSA2 647 aa12.83□□□□□ -0.36
USP3-206ENST00000558157 HYPKQ9NX55 129 aa12.83□□□□□ -0.36
USP3-206ENST00000558157 CAVIN2O95810 425 aa12.82□□□□□ -0.36
USP3-206ENST00000558157 HNRNPH2P55795 449 aaKnown RBP12.82□□□□□ -0.36
USP3-206ENST00000558157 RAD51AP2Q09MP3 1159 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms