RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 NECAB1Q8N987 351 aa16.05■□□□□ 0.16
SHMT2-222ENST00000555774 PLBD2Q8NHP8 589 aa16.05■□□□□ 0.16
SHMT2-222ENST00000555774 KLHDC4Q8TBB5 520 aa16.05■□□□□ 0.16
SHMT2-222ENST00000555774 U3KPZ7 1027 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-222ENST00000555774 ARFGEF2Q9Y6D5 1785 aa16.05■□□□□ 0.16
SHMT2-222ENST00000555774 CSB-PGBD3P0DP91 1061 aa16.05■□□□□ 0.16
SHMT2-222ENST00000555774 ATF3P18847 181 aa16.05■□□□□ 0.16
SHMT2-222ENST00000555774 ZNF589Q86UQ0 364 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-222ENST00000555774 USP16Q9Y5T5 823 aa16.05■□□□□ 0.16
SHMT2-222ENST00000555774 TNS3Q68CZ2 1445 aa16.04■□□□□ 0.16
SHMT2-222ENST00000555774 TOB2Q14106 344 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-222ENST00000555774 HAUS7Q99871 368 aa16.04■□□□□ 0.16
SHMT2-222ENST00000555774 GLI3P10071 1580 aa16.04■□□□□ 0.16
SHMT2-222ENST00000555774 CPDO75976 1380 aa16.04■□□□□ 0.16
SHMT2-222ENST00000555774 TCHHQ07283 1943 aa16.04■□□□□ 0.16
SHMT2-222ENST00000555774 KIAA2012Q0VF49 1180 aa16.03■□□□□ 0.16
SHMT2-222ENST00000555774 TFCP2Q12800 502 aa16.03■□□□□ 0.16
SHMT2-222ENST00000555774 AFDNP55196 1824 aaKnown RBP16.03■□□□□ 0.16
SHMT2-222ENST00000555774 CYP27B1O15528 508 aa16.03■□□□□ 0.16
SHMT2-222ENST00000555774 CASP7P55210 303 aa16.03■□□□□ 0.16
SHMT2-222ENST00000555774 SCAND2PQ9GZW5 306 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-222ENST00000555774 HCLS1P14317 486 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-222ENST00000555774 CABP4P57796 275 aa16.02■□□□□ 0.16
SHMT2-222ENST00000555774 UBE3BQ7Z3V4 1068 aa16.02■□□□□ 0.16
SHMT2-222ENST00000555774 GPR108Q9NPR9 543 aa16.02■□□□□ 0.16
SHMT2-222ENST00000555774 TMEM94Q12767 1356 aa16.02■□□□□ 0.16
SHMT2-222ENST00000555774 A0A087WZG4 1122 aa16.02■□□□□ 0.15
SHMT2-222ENST00000555774 KDM4AO75164 1064 aa16.02■□□□□ 0.15
SHMT2-222ENST00000555774 DDX54Q8TDD1 881 aaKnown RBP16.02■□□□□ 0.15
SHMT2-222ENST00000555774 NEK1Q96PY6 1258 aa16.02■□□□□ 0.15
SHMT2-222ENST00000555774 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.02■□□□□ 0.153e-7■■□□□ 13.1
SHMT2-222ENST00000555774 SH3TC1Q8TE82 1336 aa16.02■□□□□ 0.15
SHMT2-222ENST00000555774 HSP90AA2PQ14568 343 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-222ENST00000555774 MCMDC2Q4G0Z9 681 aa16.01■□□□□ 0.15
SHMT2-222ENST00000555774 CDC37L1Q7L3B6 337 aa16.01■□□□□ 0.15
SHMT2-222ENST00000555774 USP25Q9UHP3 1055 aa16.01■□□□□ 0.15
SHMT2-222ENST00000555774 PALLDQ8WX93 1383 aa16.01■□□□□ 0.15
SHMT2-222ENST00000555774 ADCY5O95622 1261 aa16.01■□□□□ 0.15
SHMT2-222ENST00000555774 CCDC192P0DO97 292 aa16.01■□□□□ 0.15
SHMT2-222ENST00000555774 ZNF609O15014 1411 aa16.01■□□□□ 0.15
SHMT2-222ENST00000555774 HMGB1P09429 215 aaKnown RBP16■□□□□ 0.15
SHMT2-222ENST00000555774 TTC6Q86TZ1 520 aa16■□□□□ 0.15
SHMT2-222ENST00000555774 GTF3C6Q969F1 213 aa16■□□□□ 0.15
SHMT2-222ENST00000555774 R3HCC1Q9Y3T6 440 aaKnown RBP16■□□□□ 0.15
SHMT2-222ENST00000555774 H7C1W4 665 aa16■□□□□ 0.15
SHMT2-222ENST00000555774 TPM3P06753 285 aa16■□□□□ 0.15
SHMT2-222ENST00000555774 GIMAP6Q6P9H5 292 aa16■□□□□ 0.15
SHMT2-222ENST00000555774 KBTBD3Q8NAB2 608 aa16■□□□□ 0.15
SHMT2-222ENST00000555774 DBNDD2Q9BQY9 259 aa16■□□□□ 0.15
SHMT2-222ENST00000555774 HELLSQ9NRZ9 838 aa15.99■□□□□ 0.15
SHMT2-222ENST00000555774 EDC3Q96F86 508 aaKnown RBP15.99■□□□□ 0.15
SHMT2-222ENST00000555774 LLPHQ9BRT6 129 aaKnown RBP15.99■□□□□ 0.15
SHMT2-222ENST00000555774 NUP62CLQ9H1M0 184 aa15.99■□□□□ 0.15
SHMT2-222ENST00000555774 DDX19AQ9NUU7 478 aaKnown RBP15.99■□□□□ 0.15
SHMT2-222ENST00000555774 TAF6LQ9Y6J9 622 aa15.99■□□□□ 0.15
SHMT2-222ENST00000555774 FOXO4P98177 505 aa15.98■□□□□ 0.15
SHMT2-222ENST00000555774 MAP3K11Q16584 847 aa15.98■□□□□ 0.15
SHMT2-222ENST00000555774 SASS6Q6UVJ0 657 aa15.98■□□□□ 0.15
SHMT2-222ENST00000555774 CADPS2Q86UW7 1296 aa15.98■□□□□ 0.15
SHMT2-222ENST00000555774 PIBF1Q8WXW3 757 aa15.98■□□□□ 0.15
SHMT2-222ENST00000555774 DNAJC2Q99543 621 aaKnown RBP15.98■□□□□ 0.15
SHMT2-222ENST00000555774 SPATA31A3Q5VYP0 1347 aa15.98■□□□□ 0.15
SHMT2-222ENST00000555774 ATP5J2-PTCD1G3V325 749 aa15.97■□□□□ 0.15
SHMT2-222ENST00000555774 PTCD1O75127 700 aaKnown RBP15.97■□□□□ 0.15
SHMT2-222ENST00000555774 LMBR1LQ6UX01 489 aa15.97■□□□□ 0.15
SHMT2-222ENST00000555774 IL15P40933 162 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-222ENST00000555774 COL9A3Q14050 684 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-222ENST00000555774 UBE2Q2Q8WVN8 375 aa15.97■□□□□ 0.15
SHMT2-222ENST00000555774 SPATA32Q96LK8 384 aa15.97■□□□□ 0.15
SHMT2-222ENST00000555774 TCEANC2Q96MN5 208 aa15.97■□□□□ 0.15
SHMT2-222ENST00000555774 DSCC1Q9BVC3 393 aa15.97■□□□□ 0.15
SHMT2-222ENST00000555774 ZSCAN16Q9H4T2 348 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-222ENST00000555774 ATG3Q9NT62 314 aa15.97■□□□□ 0.15
SHMT2-222ENST00000555774 CWC25Q9NXE8 425 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-222ENST00000555774 PCDH11XQ9BZA7 1347 aa15.97■□□□□ 0.15
SHMT2-222ENST00000555774 PCDH11YQ9BZA8 1340 aa15.97■□□□□ 0.15
SHMT2-222ENST00000555774 Q6ZUG5 572 aa15.96■□□□□ 0.15
SHMT2-222ENST00000555774 FAM200AQ8TCP9 573 aa15.96■□□□□ 0.15
SHMT2-222ENST00000555774 NUP188Q5SRE5 1749 aa15.96■□□□□ 0.15
SHMT2-222ENST00000555774 GOLGA6L4A6NEF3 574 aa15.96■□□□□ 0.15
SHMT2-222ENST00000555774 ERVV-2B6SEH9 535 aa15.96■□□□□ 0.15
SHMT2-222ENST00000555774 CYP21A2P08686 494 aa15.96■□□□□ 0.15
SHMT2-222ENST00000555774 RBM43Q6ZSC3 357 aaKnown RBP15.96■□□□□ 0.15
SHMT2-222ENST00000555774 FERMT3Q86UX7 667 aa15.96■□□□□ 0.15
SHMT2-222ENST00000555774 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.96■□□□□ 0.15
SHMT2-222ENST00000555774 LEO1Q8WVC0 666 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-222ENST00000555774 JARID2Q92833 1246 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-222ENST00000555774 CHMP4CQ96CF2 233 aa15.96■□□□□ 0.15
SHMT2-222ENST00000555774 SPEF2Q9C093 1822 aa15.96■□□□□ 0.14
SHMT2-222ENST00000555774 UBR2Q8IWV8 1755 aa15.95■□□□□ 0.14
SHMT2-222ENST00000555774 CIAO1O76071 339 aa15.95■□□□□ 0.14
SHMT2-222ENST00000555774 PIP4K2AP48426 406 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-222ENST00000555774 ATG9AQ7Z3C6 839 aa15.95■□□□□ 0.14
SHMT2-222ENST00000555774 SMARCC2Q8TAQ2 1214 aa15.95■□□□□ 0.14
SHMT2-222ENST00000555774 RESTQ13127 1097 aa15.95■□□□□ 0.14
SHMT2-222ENST00000555774 CHRNA2Q15822 529 aa15.95■□□□□ 0.14
SHMT2-222ENST00000555774 CCDC191Q8NCU4 936 aa15.95■□□□□ 0.14
SHMT2-222ENST00000555774 PAG1Q9NWQ8 432 aa15.95■□□□□ 0.14
SHMT2-222ENST00000555774 KIF3AQ9Y496 699 aa15.95■□□□□ 0.14
SHMT2-222ENST00000555774 PAPPAQ13219 1627 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms