RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 ELL2O00472 640 aaPredicted RBP18.41■□□□□ 0.54
SHMT2-208ENST00000553868 IPO8O15397 1037 aaKnown RBP18.41■□□□□ 0.54
SHMT2-208ENST00000553868 A1BGP04217 495 aa18.41■□□□□ 0.54
SHMT2-208ENST00000553868 NOGQ13253 232 aa18.41■□□□□ 0.54
SHMT2-208ENST00000553868 SSH1Q8WYL5 1049 aa18.41■□□□□ 0.54
SHMT2-208ENST00000553868 KDM3BQ7LBC6 1761 aa18.4■□□□□ 0.54
SHMT2-208ENST00000553868 EIF4A1P60842 406 aaKnown RBP18.4■□□□□ 0.54
SHMT2-208ENST00000553868 DLK2Q6UY11 383 aa18.4■□□□□ 0.54
SHMT2-208ENST00000553868 TTC5Q8N0Z6 440 aa18.4■□□□□ 0.54
SHMT2-208ENST00000553868 NBPF15Q8N660 670 aa18.4■□□□□ 0.54
SHMT2-208ENST00000553868 SIPA1L3O60292 1781 aaPredicted RBP18.4■□□□□ 0.54
SHMT2-208ENST00000553868 KLRG2A4D1S0 409 aaPredicted RBP18.39■□□□□ 0.53
SHMT2-208ENST00000553868 FAM177BA6PVY3 158 aa18.39■□□□□ 0.53
SHMT2-208ENST00000553868 TRPA1O75762 1119 aa18.39■□□□□ 0.53
SHMT2-208ENST00000553868 PDE3AQ14432 1141 aa18.39■□□□□ 0.53
SHMT2-208ENST00000553868 GCC1Q96CN9 775 aa18.39■□□□□ 0.53
SHMT2-208ENST00000553868 ZNF496Q96IT1 587 aaPredicted RBP18.39■□□□□ 0.53
SHMT2-208ENST00000553868 HPS5Q9UPZ3 1129 aa18.39■□□□□ 0.53
SHMT2-208ENST00000553868 MKI67P46013 3256 aaKnown RBP18.39■□□□□ 0.53
SHMT2-208ENST00000553868 IL6STP40189 918 aaPredicted RBP18.38■□□□□ 0.53
SHMT2-208ENST00000553868 PIP4K2AP48426 406 aaPredicted RBP18.38■□□□□ 0.53
SHMT2-208ENST00000553868 IRX6P78412 446 aaPredicted RBP18.38■□□□□ 0.53
SHMT2-208ENST00000553868 CCDC30Q5VVM6 783 aa18.38■□□□□ 0.53
SHMT2-208ENST00000553868 ZKSCAN2Q63HK3 967 aa18.38■□□□□ 0.53
SHMT2-208ENST00000553868 ZNF790Q6PG37 636 aa18.38■□□□□ 0.53
SHMT2-208ENST00000553868 FRAT1Q92837 279 aaPredicted RBP18.38■□□□□ 0.53
SHMT2-208ENST00000553868 PSMD1Q99460 953 aa18.38■□□□□ 0.53
SHMT2-208ENST00000553868 BCL2L13Q9BXK5 485 aa18.38■□□□□ 0.53
SHMT2-208ENST00000553868 ADARB2Q9NS39 739 aaKnown RBP18.38■□□□□ 0.53
SHMT2-208ENST00000553868 PLIN1O60240 522 aa18.37■□□□□ 0.53
SHMT2-208ENST00000553868 HUNKP57058 714 aa18.37■□□□□ 0.53
SHMT2-208ENST00000553868 KRT24Q2M2I5 525 aa18.37■□□□□ 0.53
SHMT2-208ENST00000553868 CTU1Q7Z7A3 348 aaKnown RBP18.37■□□□□ 0.53
SHMT2-208ENST00000553868 DZIP3Q86Y13 1208 aaKnown RBP18.37■□□□□ 0.53
SHMT2-208ENST00000553868 LARGE2Q8N3Y3 721 aa18.37■□□□□ 0.53
SHMT2-208ENST00000553868 STK31Q9BXU1 1019 aa18.37■□□□□ 0.53
SHMT2-208ENST00000553868 RNF186Q9NXI6 227 aa18.37■□□□□ 0.53
SHMT2-208ENST00000553868 GPRC5DQ9NZD1 345 aa18.37■□□□□ 0.53
SHMT2-208ENST00000553868 FAM155AB1AL88 458 aaPredicted RBP18.36■□□□□ 0.53
SHMT2-208ENST00000553868 MRPL50Q8N5N7 158 aaKnown RBP18.36■□□□□ 0.53
SHMT2-208ENST00000553868 HEG1Q9ULI3 1381 aa18.35■□□□□ 0.53
SHMT2-208ENST00000553868 KIF23Q02241 960 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-208ENST00000553868 ARHGAP45Q92619 1136 aa18.35■□□□□ 0.53
SHMT2-208ENST00000553868 FMNL2Q96PY5 1086 aa18.35■□□□□ 0.53
SHMT2-208ENST00000553868 SAGE1Q9NXZ1 904 aa18.35■□□□□ 0.53
SHMT2-208ENST00000553868 HIRAP54198 1017 aaPredicted RBP18.34■□□□□ 0.53
SHMT2-208ENST00000553868 HDGFL1Q5TGJ6 251 aa18.34■□□□□ 0.53
SHMT2-208ENST00000553868 KCNQ3O43525 872 aa18.33■□□□□ 0.52
SHMT2-208ENST00000553868 ALDH1B1P30837 517 aa18.33■□□□□ 0.52
SHMT2-208ENST00000553868 FXR1P51114 621 aaKnown RBP eCLIP18.33■□□□□ 0.52
SHMT2-208ENST00000553868 ATF7IPQ6VMQ6 1270 aa18.33■□□□□ 0.52
SHMT2-208ENST00000553868 NPM2Q86SE8 214 aaKnown RBP18.33■□□□□ 0.52
SHMT2-208ENST00000553868 FTSJ3Q8IY81 847 aaKnown RBP18.33■□□□□ 0.52
SHMT2-208ENST00000553868 NOB1Q9ULX3 412 aaKnown RBP18.33■□□□□ 0.52
SHMT2-208ENST00000553868 AKAP11Q9UKA4 1901 aa18.33■□□□□ 0.52
SHMT2-208ENST00000553868 TCERG1O14776 1098 aaKnown RBP18.32■□□□□ 0.52
SHMT2-208ENST00000553868 TRPM4Q8TD43 1214 aa18.32■□□□□ 0.52
SHMT2-208ENST00000553868 API5Q9BZZ5 524 aaKnown RBP18.32■□□□□ 0.52
SHMT2-208ENST00000553868 PGAP2Q9UHJ9 254 aa18.32■□□□□ 0.52
SHMT2-208ENST00000553868 SZT2Q5T011 3432 aa18.32■□□□□ 0.52
SHMT2-208ENST00000553868 PTPRCP08575 1304 aa18.31■□□□□ 0.52
SHMT2-208ENST00000553868 SHTN1A0MZ66 631 aa18.31■□□□□ 0.52
SHMT2-208ENST00000553868 SNRPA1P09661 255 aaKnown RBP18.31■□□□□ 0.52
SHMT2-208ENST00000553868 GMPSP49915 693 aaPredicted RBP18.31■□□□□ 0.52
SHMT2-208ENST00000553868 RGMBQ6NW40 437 aa18.31■□□□□ 0.52
SHMT2-208ENST00000553868 TPTE2Q6XPS3 522 aa18.31■□□□□ 0.52
SHMT2-208ENST00000553868 USP48Q86UV5 1035 aa18.31■□□□□ 0.52
SHMT2-208ENST00000553868 NIM1KQ8IY84 436 aa18.31■□□□□ 0.52
SHMT2-208ENST00000553868 DZIP1LQ8IYY4 767 aaKnown RBP18.31■□□□□ 0.52
SHMT2-208ENST00000553868 SLC4A2P04920 1241 aa18.3■□□□□ 0.52
SHMT2-208ENST00000553868 CDC37L1Q7L3B6 337 aa18.3■□□□□ 0.52
SHMT2-208ENST00000553868 PPP4R2Q9NY27 417 aa18.3■□□□□ 0.52
SHMT2-208ENST00000553868 NIP7Q9Y221 180 aaKnown RBP eCLIP18.3■□□□□ 0.52
SHMT2-208ENST00000553868 CXCL9Q07325 125 aa18.29■□□□□ 0.52
SHMT2-208ENST00000553868 AAMPQ13685 434 aa18.29■□□□□ 0.52
SHMT2-208ENST00000553868 AOC3Q16853 763 aa18.29■□□□□ 0.52
SHMT2-208ENST00000553868 CRBNQ96SW2 442 aa18.29■□□□□ 0.52
SHMT2-208ENST00000553868 TEX13AQ9BXU3 409 aaPredicted RBP18.29■□□□□ 0.52
SHMT2-208ENST00000553868 PPIP5K2O43314 1243 aa18.28■□□□□ 0.52
SHMT2-208ENST00000553868 TRIM27P14373 513 aa18.28■□□□□ 0.52
SHMT2-208ENST00000553868 EIF2S2P20042 333 aaKnown RBP18.28■□□□□ 0.52
SHMT2-208ENST00000553868 C20orf194Q5TEA3 1177 aa18.28■□□□□ 0.52
SHMT2-208ENST00000553868 CSRNP1Q96S65 589 aa18.28■□□□□ 0.52
SHMT2-208ENST00000553868 DBF4Q9UBU7 674 aaPredicted RBP18.28■□□□□ 0.52
SHMT2-208ENST00000553868 ABCC12Q96J65 1359 aa18.28■□□□□ 0.52
SHMT2-208ENST00000553868 ZNF157P51786 506 aaPredicted RBP18.27■□□□□ 0.52
SHMT2-208ENST00000553868 CLEC4GQ6UXB4 293 aa18.27■□□□□ 0.52
SHMT2-208ENST00000553868 EXOC6Q8TAG9 804 aa18.27■□□□□ 0.52
SHMT2-208ENST00000553868 CHMP4BQ9H444 224 aaKnown RBP18.27■□□□□ 0.52
SHMT2-208ENST00000553868 PRAMEF22A3QJZ6 481 aa18.26■□□□□ 0.51
SHMT2-208ENST00000553868 CC2D2BQ6DHV5 1058 aa18.26■□□□□ 0.51
SHMT2-208ENST00000553868 NUTM1Q86Y26 1132 aa18.26■□□□□ 0.51
SHMT2-208ENST00000553868 PANK1Q8TE04 598 aa18.26■□□□□ 0.51
SHMT2-208ENST00000553868 USP16Q9Y5T5 823 aa18.26■□□□□ 0.51
SHMT2-208ENST00000553868 GTF2E1P29083 439 aaPredicted RBP18.25■□□□□ 0.51
SHMT2-208ENST00000553868 CRY2Q49AN0 593 aa18.25■□□□□ 0.51
SHMT2-208ENST00000553868 ZC3H15Q8WU90 426 aaKnown RBP18.25■□□□□ 0.51
SHMT2-208ENST00000553868 NECTIN2Q92692 538 aa18.25■□□□□ 0.51
SHMT2-208ENST00000553868 CLUAP1Q96AJ1 413 aa18.25■□□□□ 0.51
SHMT2-208ENST00000553868 ZNF652Q9Y2D9 606 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms