RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 NIP7Q9Y221 180 aaKnown RBP eCLIP17.56■□□□□ 0.4
CUX1-214ENST00000550008 FSIP1Q8NA03 581 aa17.56■□□□□ 0.4
CUX1-214ENST00000550008 SYT1P21579 422 aa17.56■□□□□ 0.4
CUX1-214ENST00000550008 ZNF830Q96NB3 372 aaPredicted RBP17.56■□□□□ 0.4
CUX1-214ENST00000550008 HOXB7P09629 217 aa17.55■□□□□ 0.4
CUX1-214ENST00000550008 APOBRQ0VD83 1088 aa17.55■□□□□ 0.4
CUX1-214ENST00000550008 CEP57L1Q8IYX8 460 aa17.55■□□□□ 0.4
CUX1-214ENST00000550008 HMG20BQ9P0W2 317 aa17.55■□□□□ 0.4
CUX1-214ENST00000550008 GOLGA8AA7E2F4 631 aa17.55■□□□□ 0.4
CUX1-214ENST00000550008 RXRAP19793 462 aa17.55■□□□□ 0.4
CUX1-214ENST00000550008 PPP1R1BQ9UD71 204 aaPredicted RBP17.55■□□□□ 0.4
CUX1-214ENST00000550008 JAG2Q9Y219 1238 aa17.55■□□□□ 0.4
CUX1-214ENST00000550008 SNX14Q9Y5W7 946 aa17.55■□□□□ 0.4
CUX1-214ENST00000550008 SLC12A7Q9Y666 1083 aa17.55■□□□□ 0.4
CUX1-214ENST00000550008 ABCA6Q8N139 1617 aa17.55■□□□□ 0.4
CUX1-214ENST00000550008 IRS4O14654 1257 aaPredicted RBP17.55■□□□□ 0.4
CUX1-214ENST00000550008 HMGN5P82970 282 aaKnown RBP17.55■□□□□ 0.4
CUX1-214ENST00000550008 BEND3Q5T5X7 828 aa17.55■□□□□ 0.4
CUX1-214ENST00000550008 EAF2Q96CJ1 260 aaPredicted RBP17.55■□□□□ 0.4
CUX1-214ENST00000550008 C8orf37Q96NL8 207 aa17.55■□□□□ 0.4
CUX1-214ENST00000550008 UBE2HP62256 183 aa17.54■□□□□ 0.4
CUX1-214ENST00000550008 TMEM67Q5HYA8 995 aa17.54■□□□□ 0.4
CUX1-214ENST00000550008 SSH3Q8TE77 659 aa17.54■□□□□ 0.4
CUX1-214ENST00000550008 ARHGAP31Q2M1Z3 1444 aa17.54■□□□□ 0.4
CUX1-214ENST00000550008 ARAP3Q8WWN8 1544 aa17.54■□□□□ 0.4
CUX1-214ENST00000550008 A0A1B0GUL7 405 aa17.54■□□□□ 0.4
CUX1-214ENST00000550008 F13A1P00488 732 aa17.54■□□□□ 0.4
CUX1-214ENST00000550008 TTLL7Q6ZT98 887 aa17.54■□□□□ 0.4
CUX1-214ENST00000550008 ARHGEF25Q86VW2 580 aa17.54■□□□□ 0.4
CUX1-214ENST00000550008 ZNF219Q9P2Y4 722 aaPredicted RBP17.54■□□□□ 0.4
CUX1-214ENST00000550008 RBM5P52756 815 aaKnown RBP eCLIP17.54■□□□□ 0.45e-8■■■□□ 16.8
CUX1-214ENST00000550008 TNNI3KQ59H18 835 aa17.54■□□□□ 0.4
CUX1-214ENST00000550008 CCDC47Q96A33 483 aaKnown RBP17.54■□□□□ 0.4
CUX1-214ENST00000550008 BABAM1Q9NWV8 329 aa17.54■□□□□ 0.4
CUX1-214ENST00000550008 FPGT-TNNI3KV9GXZ4 949 aa17.54■□□□□ 0.4
CUX1-214ENST00000550008 NLRP1Q9C000 1473 aa17.54■□□□□ 0.4
CUX1-214ENST00000550008 GLI2P10070 1586 aa17.53■□□□□ 0.4
CUX1-214ENST00000550008 SLAIN2Q9P270 581 aa17.53■□□□□ 0.4
CUX1-214ENST00000550008 USP5P45974 858 aa17.53■□□□□ 0.4
CUX1-214ENST00000550008 DZIP1Q86YF9 867 aaKnown RBP17.53■□□□□ 0.4
CUX1-214ENST00000550008 PLBD2Q8NHP8 589 aa17.53■□□□□ 0.4
CUX1-214ENST00000550008 PCDH11XQ9BZA7 1347 aa17.52■□□□□ 0.4
CUX1-214ENST00000550008 PCDH11YQ9BZA8 1340 aa17.52■□□□□ 0.4
CUX1-214ENST00000550008 PHKG2P15735 406 aa17.52■□□□□ 0.4
CUX1-214ENST00000550008 MIGA1Q8NAN2 632 aa17.52■□□□□ 0.4
CUX1-214ENST00000550008 CEP152O94986 1710 aa17.52■□□□□ 0.4
CUX1-214ENST00000550008 CCDC24Q8N4L8 307 aa17.52■□□□□ 0.4
CUX1-214ENST00000550008 NCOA7Q8NI08 942 aa17.52■□□□□ 0.4
CUX1-214ENST00000550008 DACT1Q9NYF0 836 aa17.52■□□□□ 0.4
CUX1-214ENST00000550008 NEURL1BA8MQ27 555 aa17.52■□□□□ 0.39
CUX1-214ENST00000550008 IPO7O95373 1038 aaKnown RBP17.51■□□□□ 0.39
CUX1-214ENST00000550008 ADCY5O95622 1261 aa17.51■□□□□ 0.39
CUX1-214ENST00000550008 KLHL10Q6JEL2 608 aa17.51■□□□□ 0.39
CUX1-214ENST00000550008 ZSCAN29Q8IWY8 852 aaPredicted RBP17.51■□□□□ 0.39
CUX1-214ENST00000550008 TPM2P07951 284 aa17.51■□□□□ 0.39
CUX1-214ENST00000550008 PODXL2Q9NZ53 605 aa17.51■□□□□ 0.39
CUX1-214ENST00000550008 SLC26A6Q9BXS9 759 aa17.51■□□□□ 0.39
CUX1-214ENST00000550008 MCM5P33992 734 aa17.51■□□□□ 0.39
CUX1-214ENST00000550008 IARSP41252 1262 aaKnown RBP17.51■□□□□ 0.39
CUX1-214ENST00000550008 LRSAM1Q6UWE0 723 aa17.51■□□□□ 0.39
CUX1-214ENST00000550008 RUFY3Q7L099 469 aa17.51■□□□□ 0.39
CUX1-214ENST00000550008 MKNK2Q9HBH9 465 aa17.51■□□□□ 0.39
CUX1-214ENST00000550008 CLASP1Q7Z460 1538 aa17.5■□□□□ 0.39
CUX1-214ENST00000550008 METAP2P50579 478 aaKnown RBP eCLIP17.5■□□□□ 0.39
CUX1-214ENST00000550008 PTH1RQ03431 593 aa17.5■□□□□ 0.39
CUX1-214ENST00000550008 SEC62Q99442 399 aaKnown RBP17.5■□□□□ 0.39
CUX1-214ENST00000550008 TMEM94Q12767 1356 aa17.5■□□□□ 0.39
CUX1-214ENST00000550008 EYA2O00167 538 aa17.5■□□□□ 0.39
CUX1-214ENST00000550008 ZNF165P49910 485 aa17.5■□□□□ 0.39
CUX1-214ENST00000550008 CDC5LQ99459 802 aaKnown RBP17.5■□□□□ 0.39
CUX1-214ENST00000550008 NCOA5Q9HCD5 579 aaKnown RBP17.5■□□□□ 0.39
CUX1-214ENST00000550008 NBPF5PQ86XG9 351 aaPredicted RBP17.49■□□□□ 0.39
CUX1-214ENST00000550008 CCAR1Q8IX12 1150 aaKnown RBP17.49■□□□□ 0.39
CUX1-214ENST00000550008 MNS1Q8NEH6 495 aa17.49■□□□□ 0.39
CUX1-214ENST00000550008 RAD50Q92878 1312 aa17.49■□□□□ 0.39
CUX1-214ENST00000550008 SLC27A2O14975 620 aa17.49■□□□□ 0.39
CUX1-214ENST00000550008 CYP7A1P22680 504 aa17.49■□□□□ 0.39
CUX1-214ENST00000550008 DHX8Q14562 1220 aaKnown RBP17.49■□□□□ 0.39
CUX1-214ENST00000550008 UBAP1LF5GYI3 381 aa17.49■□□□□ 0.39
CUX1-214ENST00000550008 PRC1O43663 620 aa17.49■□□□□ 0.39
CUX1-214ENST00000550008 MFSD6Q6ZSS7 791 aa17.49■□□□□ 0.39
CUX1-214ENST00000550008 ALKQ9UM73 1620 aa17.48■□□□□ 0.39
CUX1-214ENST00000550008 UQCRHLA0A096LP55 91 aa17.48■□□□□ 0.39
CUX1-214ENST00000550008 RNF113AO15541 343 aaKnown RBP17.48■□□□□ 0.39
CUX1-214ENST00000550008 UQCRHP07919 91 aa17.48■□□□□ 0.39
CUX1-214ENST00000550008 CFAP100Q494V2 611 aa17.48■□□□□ 0.39
CUX1-214ENST00000550008 C6orf229H3BNL8 230 aa17.48■□□□□ 0.39
CUX1-214ENST00000550008 TXLNAP40222 546 aa17.48■□□□□ 0.39
CUX1-214ENST00000550008 TLR7Q9NYK1 1049 aaKnown RBP17.48■□□□□ 0.39
CUX1-214ENST00000550008 AXIN2Q9Y2T1 843 aa17.48■□□□□ 0.39
CUX1-214ENST00000550008 ADGRB3O60242 1522 aa17.48■□□□□ 0.39
CUX1-214ENST00000550008 TULP4Q9NRJ4 1543 aa17.48■□□□□ 0.39
CUX1-214ENST00000550008 CCDC152Q4G0S7 254 aa17.48■□□□□ 0.39
CUX1-214ENST00000550008 IQCA1Q86XH1 822 aa17.48■□□□□ 0.39
CUX1-214ENST00000550008 ABCA9Q8IUA7 1624 aa17.47■□□□□ 0.39
CUX1-214ENST00000550008 MARCKSP29966 332 aaPredicted RBP17.47■□□□□ 0.39
CUX1-214ENST00000550008 TTF1Q15361 905 aaPredicted RBP17.47■□□□□ 0.39
CUX1-214ENST00000550008 HSP90AA4PQ58FG1 418 aa17.47■□□□□ 0.39
CUX1-214ENST00000550008 PPRC1Q5VV67 1664 aaKnown RBP17.47■□□□□ 0.39
CUX1-214ENST00000550008 A0A0D9SFI3 127 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms