RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 PNMA8AQ86V59 439 aaPredicted RBP29.33■■■□□ 2.29
CHD4-214ENST00000545942 TSPYL6Q8N831 410 aa29.33■■■□□ 2.29
CHD4-214ENST00000545942 JMYQ8N9B5 988 aa29.33■■■□□ 2.29
CHD4-214ENST00000545942 TSR2Q969E8 191 aaKnown RBP29.33■■■□□ 2.29
CHD4-214ENST00000545942 GJA3Q9Y6H8 435 aa29.33■■■□□ 2.29
CHD4-214ENST00000545942 NCBP3Q53F19 620 aaKnown RBP29.32■■■□□ 2.28
CHD4-214ENST00000545942 RTL5Q5HYW3 569 aaPredicted RBP29.32■■■□□ 2.28
CHD4-214ENST00000545942 MPNDQ8N594 471 aa29.32■■■□□ 2.28
CHD4-214ENST00000545942 DDX58O95786 925 aaKnown RBP29.31■■■□□ 2.28
CHD4-214ENST00000545942 MYD88Q99836 296 aa29.31■■■□□ 2.28
CHD4-214ENST00000545942 IRS4O14654 1257 aaPredicted RBP29.3■■■□□ 2.28
CHD4-214ENST00000545942 ZBTB38Q8NAP3 1195 aaPredicted RBP29.3■■■□□ 2.28
CHD4-214ENST00000545942 DDX60Q8IY21 1712 aaKnown RBP29.3■■■□□ 2.28
CHD4-214ENST00000545942 IL16Q14005 1332 aa29.29■■■□□ 2.28
CHD4-214ENST00000545942 HSP90B1P14625 803 aaKnown RBP29.28■■■□□ 2.28
CHD4-214ENST00000545942 LMOD1P29536 600 aaPredicted RBP29.28■■■□□ 2.28
CHD4-214ENST00000545942 CCDC191Q8NCU4 936 aa29.28■■■□□ 2.28
CHD4-214ENST00000545942 CLEC11AQ9Y240 323 aa29.28■■■□□ 2.28
CHD4-214ENST00000545942 STK31Q9BXU1 1019 aa29.27■■■□□ 2.28
CHD4-214ENST00000545942 CREBZFQ9NS37 354 aa29.27■■■□□ 2.28
CHD4-214ENST00000545942 KIAA2012Q0VF49 1180 aa29.26■■■□□ 2.27
CHD4-214ENST00000545942 CELF1Q92879 486 aaKnown RBP29.26■■■□□ 2.27
CHD4-214ENST00000545942 METTL22Q9BUU2 404 aaPredicted RBP29.26■■■□□ 2.27
CHD4-214ENST00000545942 ZNRF3Q9ULT6 936 aa29.26■■■□□ 2.27
CHD4-214ENST00000545942 PASKQ96RG2 1323 aa29.26■■■□□ 2.27
CHD4-214ENST00000545942 SCNN1DP51172 638 aa29.25■■■□□ 2.27
CHD4-214ENST00000545942 TWISTNBQ3B726 338 aaPredicted RBP29.25■■■□□ 2.27
CHD4-214ENST00000545942 CWC25Q9NXE8 425 aaPredicted RBP29.25■■■□□ 2.27
CHD4-214ENST00000545942 PCCAP05165 728 aaPredicted RBP29.24■■■□□ 2.27
CHD4-214ENST00000545942 ITGBL1O95965 494 aaPredicted RBP29.23■■■□□ 2.27
CHD4-214ENST00000545942 MAP3K2Q9Y2U5 619 aa29.23■■■□□ 2.27
CHD4-214ENST00000545942 ADAMTSL1Q8N6G6 1762 aa29.23■■■□□ 2.27
CHD4-214ENST00000545942 EPS15P42566 896 aa29.22■■■□□ 2.27
CHD4-214ENST00000545942 CXCL9Q07325 125 aa29.22■■■□□ 2.27
CHD4-214ENST00000545942 KSR2Q6VAB6 950 aa29.22■■■□□ 2.27
CHD4-214ENST00000545942 LRRC37AA6NMS7 1700 aa29.21■■■□□ 2.27
CHD4-214ENST00000545942 PI4KAP2A4QPH2 592 aa29.2■■■□□ 2.27
CHD4-214ENST00000545942 RPS8P62241 208 aaKnown RBP29.2■■■□□ 2.27
CHD4-214ENST00000545942 MAP1SQ66K74 1059 aaPredicted RBP29.2■■■□□ 2.27
CHD4-214ENST00000545942 CNTROBQ8N137 903 aa29.2■■■□□ 2.27
CHD4-214ENST00000545942 PI4KAP1Q8N8J0 262 aa29.2■■■□□ 2.27
CHD4-214ENST00000545942 NSFL1CQ9UNZ2 370 aaKnown RBP29.2■■■□□ 2.27
CHD4-214ENST00000545942 TAF1P21675 1872 aa29.2■■■□□ 2.27
CHD4-214ENST00000545942 LTBP1Q14766 1721 aa29.2■■■□□ 2.26
CHD4-214ENST00000545942 DUOX1Q9NRD9 1551 aa29.2■■■□□ 2.26
CHD4-214ENST00000545942 WDR63Q8IWG1 891 aa29.2■■■□□ 2.26
CHD4-214ENST00000545942 SALL2Q9Y467 1007 aaPredicted RBP29.2■■■□□ 2.26
CHD4-214ENST00000545942 FANCIQ9NVI1 1328 aa29.19■■■□□ 2.26
CHD4-214ENST00000545942 PDE8AO60658 829 aa29.19■■■□□ 2.26
CHD4-214ENST00000545942 CCDC152Q4G0S7 254 aa29.19■■■□□ 2.26
CHD4-214ENST00000545942 CIAPIN1Q6FI81 312 aa29.19■■■□□ 2.26
CHD4-214ENST00000545942 USP50Q70EL3 339 aaPredicted RBP29.19■■■□□ 2.26
CHD4-214ENST00000545942 GPRC5DQ9NZD1 345 aa29.19■■■□□ 2.26
CHD4-214ENST00000545942 SLC4A2P04920 1241 aa29.18■■■□□ 2.26
CHD4-214ENST00000545942 NEXNQ0ZGT2 675 aa29.18■■■□□ 2.26
CHD4-214ENST00000545942 WASHC4Q2M389 1173 aa29.18■■■□□ 2.26
CHD4-214ENST00000545942 TMEM88BA6NKF7 163 aa29.17■■■□□ 2.26
CHD4-214ENST00000545942 GPSM2P81274 684 aa29.17■■■□□ 2.26
CHD4-214ENST00000545942 TNIP1Q15025 636 aa29.17■■■□□ 2.26
CHD4-214ENST00000545942 JARID2Q92833 1246 aaPredicted RBP29.17■■■□□ 2.26
CHD4-214ENST00000545942 SEC31BQ9NQW1 1179 aa29.17■■■□□ 2.26
CHD4-214ENST00000545942 COL4A1P02462 1669 aa29.16■■■□□ 2.26
CHD4-214ENST00000545942 IGKV5-2P06315 115 aa29.16■■■□□ 2.26
CHD4-214ENST00000545942 MKRN1Q9UHC7 482 aaKnown RBP29.16■■■□□ 2.26
CHD4-214ENST00000545942 CDHR2Q9BYE9 1310 aa29.15■■■□□ 2.26
CHD4-214ENST00000545942 C6orf229H3BNL8 230 aa29.15■■■□□ 2.26
CHD4-214ENST00000545942 RAD17O75943 681 aa29.15■■■□□ 2.26
CHD4-214ENST00000545942 GMPSP49915 693 aaPredicted RBP29.15■■■□□ 2.26
CHD4-214ENST00000545942 IFFO2Q5TF58 517 aa29.15■■■□□ 2.26
CHD4-214ENST00000545942 G2E3Q7L622 706 aa29.15■■■□□ 2.26
CHD4-214ENST00000545942 ADARB2Q9NS39 739 aaKnown RBP29.15■■■□□ 2.26
CHD4-214ENST00000545942 POLLQ9UGP5 575 aa29.15■■■□□ 2.26
CHD4-214ENST00000545942 YDJCA8MPS7 323 aa29.14■■■□□ 2.25
CHD4-214ENST00000545942 EYA3Q99504 573 aa29.14■■■□□ 2.25
CHD4-214ENST00000545942 PCNTO95613 3336 aa29.13■■■□□ 2.25
CHD4-214ENST00000545942 FAM9BQ8IZU0 186 aa29.13■■■□□ 2.25
CHD4-214ENST00000545942 BCL2L13Q9BXK5 485 aa29.13■■■□□ 2.25
CHD4-214ENST00000545942 CNTNAP1P78357 1384 aa29.12■■■□□ 2.25
CHD4-214ENST00000545942 CCDC85AQ96PX6 553 aaPredicted RBP29.12■■■□□ 2.25
CHD4-214ENST00000545942 NEURL1BA8MQ27 555 aa29.11■■■□□ 2.25
CHD4-214ENST00000545942 RIMBP2O15034 1052 aa29.11■■■□□ 2.25
CHD4-214ENST00000545942 FLIIQ13045 1269 aa29.11■■■□□ 2.25
CHD4-214ENST00000545942 CWF19L2Q2TBE0 894 aaKnown RBP29.11■■■□□ 2.25
CHD4-214ENST00000545942 TBC1D16Q8TBP0 767 aa29.11■■■□□ 2.25
CHD4-214ENST00000545942 PODXL2Q9NZ53 605 aa29.11■■■□□ 2.25
CHD4-214ENST00000545942 VAMP4O75379 141 aa29.1■■■□□ 2.25
CHD4-214ENST00000545942 CTSWP56202 376 aa29.1■■■□□ 2.25
CHD4-214ENST00000545942 DBNDD1Q9H9R9 158 aa29.1■■■□□ 2.25
CHD4-214ENST00000545942 EXOSC9Q06265 439 aaKnown RBP29.09■■■□□ 2.25
CHD4-214ENST00000545942 ANKRD18AQ8IVF6 992 aa29.09■■■□□ 2.25
CHD4-214ENST00000545942 ANKIB1Q9P2G1 1089 aa29.09■■■□□ 2.25
CHD4-214ENST00000545942 HSPA1AP0DMV8 641 aaKnown RBP29.08■■■□□ 2.25
CHD4-214ENST00000545942 HSPA1BP0DMV9 641 aaKnown RBP29.08■■■□□ 2.25
CHD4-214ENST00000545942 FKBP5Q13451 457 aaPredicted RBP29.08■■■□□ 2.25
CHD4-214ENST00000545942 CDC5LQ99459 802 aaKnown RBP29.07■■■□□ 2.24
CHD4-214ENST00000545942 GGA1Q9UJY5 639 aa29.07■■■□□ 2.24
CHD4-214ENST00000545942 ECE2O60344 883 aa29.06■■■□□ 2.24
CHD4-214ENST00000545942 UFL1O94874 794 aa29.06■■■□□ 2.24
CHD4-214ENST00000545942 TTLL11Q8NHH1 800 aa29.06■■■□□ 2.24
CHD4-214ENST00000545942 GPR101Q96P66 508 aaPredicted RBP29.06■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms