RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 SMIM5Q71RC9 77 aa13.27□□□□□ -0.29
LEMD3-202ENST00000539442 DEFB132Q7Z7B7 95 aa13.27□□□□□ -0.29
LEMD3-202ENST00000539442 SSH3Q8TE77 659 aa13.27□□□□□ -0.29
LEMD3-202ENST00000539442 KAZALD1Q96I82 304 aa13.27□□□□□ -0.29
LEMD3-202ENST00000539442 UTP14AQ9BVJ6 771 aaKnown RBP13.27□□□□□ -0.29
LEMD3-202ENST00000539442 BICC1Q9H694 974 aaKnown RBP13.27□□□□□ -0.29
LEMD3-202ENST00000539442 STK32BQ9NY57 414 aa13.27□□□□□ -0.29
LEMD3-202ENST00000539442 TRMT112Q9UI30 125 aaKnown RBP13.27□□□□□ -0.29
LEMD3-202ENST00000539442 SH3TC1Q8TE82 1336 aa13.27□□□□□ -0.29
LEMD3-202ENST00000539442 PNMA6EA0A0J9YXQ4 647 aa13.26□□□□□ -0.29
LEMD3-202ENST00000539442 NTSR2O95665 410 aa13.26□□□□□ -0.29
LEMD3-202ENST00000539442 SLC15A2Q16348 729 aa13.26□□□□□ -0.29
LEMD3-202ENST00000539442 SUSD4Q5VX71 490 aa13.26□□□□□ -0.29
LEMD3-202ENST00000539442 TBC1D9BQ66K14 1250 aa13.26□□□□□ -0.29
LEMD3-202ENST00000539442 SETDB2Q96T68 719 aa13.26□□□□□ -0.29
LEMD3-202ENST00000539442 NYXQ9GZU5 481 aa13.26□□□□□ -0.29
LEMD3-202ENST00000539442 DCTPP1Q9H773 170 aa13.26□□□□□ -0.29
LEMD3-202ENST00000539442 COL24A1Q17RW2 1714 aa13.25□□□□□ -0.29
LEMD3-202ENST00000539442 CARMIL3Q8ND23 1372 aa13.25□□□□□ -0.29
LEMD3-202ENST00000539442 PNPLA7Q6ZV29 1317 aa13.25□□□□□ -0.29
LEMD3-202ENST00000539442 SRGAP3O43295 1099 aa13.25□□□□□ -0.29
LEMD3-202ENST00000539442 GYS1P13807 737 aa13.25□□□□□ -0.29
LEMD3-202ENST00000539442 FAM89AQ96GI7 184 aa13.25□□□□□ -0.29
LEMD3-202ENST00000539442 ANO8Q9HCE9 1232 aaPredicted RBP13.25□□□□□ -0.29
LEMD3-202ENST00000539442 QSER1Q2KHR3 1735 aa13.25□□□□□ -0.29
LEMD3-202ENST00000539442 IRS4O14654 1257 aaPredicted RBP13.24□□□□□ -0.29
LEMD3-202ENST00000539442 FOXO4P98177 505 aa13.24□□□□□ -0.29
LEMD3-202ENST00000539442 RTL5Q5HYW3 569 aaPredicted RBP13.24□□□□□ -0.29
LEMD3-202ENST00000539442 EPHA10Q5JZY3 1008 aa13.24□□□□□ -0.29
LEMD3-202ENST00000539442 COL23A1Q86Y22 540 aaPredicted RBP13.24□□□□□ -0.29
LEMD3-202ENST00000539442 JARID2Q92833 1246 aaPredicted RBP13.24□□□□□ -0.29
LEMD3-202ENST00000539442 TUBGCP6Q96RT7 1819 aa13.23□□□□□ -0.29
LEMD3-202ENST00000539442 PDE8AO60658 829 aa13.23□□□□□ -0.29
LEMD3-202ENST00000539442 HSP90AB4PQ58FF6 505 aa13.23□□□□□ -0.29
LEMD3-202ENST00000539442 LMBR1LQ6UX01 489 aa13.23□□□□□ -0.29
LEMD3-202ENST00000539442 BICDL1Q6ZP65 573 aa13.23□□□□□ -0.29
LEMD3-202ENST00000539442 NLGN1Q8N2Q7 840 aa13.23□□□□□ -0.29
LEMD3-202ENST00000539442 CSF1RP07333 972 aa13.22□□□□□ -0.29
LEMD3-202ENST00000539442 CTSWP56202 376 aa13.22□□□□□ -0.29
LEMD3-202ENST00000539442 NFIXQ14938 502 aa13.22□□□□□ -0.29
LEMD3-202ENST00000539442 TPTE2Q6XPS3 522 aa13.22□□□□□ -0.29
LEMD3-202ENST00000539442 NBPF5PQ86XG9 351 aaPredicted RBP13.22□□□□□ -0.29
LEMD3-202ENST00000539442 UPF1Q92900 1129 aaKnown RBP eCLIP13.22□□□□□ -0.29
LEMD3-202ENST00000539442 PHF12Q96QT6 1004 aa13.22□□□□□ -0.29
LEMD3-202ENST00000539442 NOP58Q9Y2X3 529 aaKnown RBP13.22□□□□□ -0.29
LEMD3-202ENST00000539442 RIC1Q4ADV7 1423 aa13.22□□□□□ -0.29
LEMD3-202ENST00000539442 RAB11FIP3O75154 756 aa13.21□□□□□ -0.29
LEMD3-202ENST00000539442 TM4SF1P30408 202 aa13.21□□□□□ -0.29
LEMD3-202ENST00000539442 NUCB1Q02818 461 aa13.21□□□□□ -0.29
LEMD3-202ENST00000539442 SLC10A5Q5PT55 438 aa13.21□□□□□ -0.29
LEMD3-202ENST00000539442 LAMB2P55268 1798 aa13.21□□□□□ -0.29
LEMD3-202ENST00000539442 FAM177BA6PVY3 158 aa13.2□□□□□ -0.3
LEMD3-202ENST00000539442 SURF6O75683 361 aaKnown RBP13.2□□□□□ -0.3
LEMD3-202ENST00000539442 GTF2E1P29083 439 aaPredicted RBP13.2□□□□□ -0.3
LEMD3-202ENST00000539442 RFX5P48382 616 aaPredicted RBP13.2□□□□□ -0.3
LEMD3-202ENST00000539442 ASTLQ6HA08 431 aaPredicted RBP13.2□□□□□ -0.3
LEMD3-202ENST00000539442 ERC1Q8IUD2 1116 aa13.2□□□□□ -0.3
LEMD3-202ENST00000539442 SYNE4Q8N205 404 aa13.2□□□□□ -0.3
LEMD3-202ENST00000539442 TTLL11Q8NHH1 800 aa13.2□□□□□ -0.3
LEMD3-202ENST00000539442 COPRSQ9NQ92 184 aa13.2□□□□□ -0.3
LEMD3-202ENST00000539442 ZBTB47Q9UFB7 747 aaPredicted RBP13.2□□□□□ -0.3
LEMD3-202ENST00000539442 PDZRN3Q9UPQ7 1066 aa13.2□□□□□ -0.3
LEMD3-202ENST00000539442 RTL9Q8NET4 1388 aa13.2□□□□□ -0.3
LEMD3-202ENST00000539442 CCDC57Q2TAC2 916 aa13.19□□□□□ -0.3
LEMD3-202ENST00000539442 ERFEQ4G0M1 354 aa13.19□□□□□ -0.3
LEMD3-202ENST00000539442 ANKRD45Q5TZF3 282 aa13.19□□□□□ -0.3
LEMD3-202ENST00000539442 CHD1LQ86WJ1 897 aa13.19□□□□□ -0.3
LEMD3-202ENST00000539442 NUTM1Q86Y26 1132 aa13.19□□□□□ -0.3
LEMD3-202ENST00000539442 CNBD1Q8NA66 436 aa13.19□□□□□ -0.3
LEMD3-202ENST00000539442 FBXO3Q9UK99 471 aa13.19□□□□□ -0.3
LEMD3-202ENST00000539442 EXOC6BQ9Y2D4 811 aa13.19□□□□□ -0.3
LEMD3-202ENST00000539442 CHMP3Q9Y3E7 222 aa13.19□□□□□ -0.3
LEMD3-202ENST00000539442 ABCC12Q96J65 1359 aa13.19□□□□□ -0.3
LEMD3-202ENST00000539442 POLRMTO00411 1230 aaKnown RBP13.18□□□□□ -0.3
LEMD3-202ENST00000539442 NPHP1O15259 732 aa13.18□□□□□ -0.3
LEMD3-202ENST00000539442 SERPINB2P05120 415 aa13.18□□□□□ -0.3
LEMD3-202ENST00000539442 HCLS1P14317 486 aaPredicted RBP13.18□□□□□ -0.3
LEMD3-202ENST00000539442 PTPN12Q05209 780 aaKnown RBP13.18□□□□□ -0.3
LEMD3-202ENST00000539442 IFIT5Q13325 482 aaKnown RBP13.18□□□□□ -0.3
LEMD3-202ENST00000539442 FAM161AQ3B820 660 aa13.18□□□□□ -0.3
LEMD3-202ENST00000539442 CCDC152Q4G0S7 254 aa13.18□□□□□ -0.3
LEMD3-202ENST00000539442 KIF1BPQ96EK5 621 aa13.18□□□□□ -0.3
LEMD3-202ENST00000539442 LRRCC1Q9C099 1032 aa13.18□□□□□ -0.3
LEMD3-202ENST00000539442 DDX60Q8IY21 1712 aaKnown RBP13.18□□□□□ -0.3
LEMD3-202ENST00000539442 ANKRD18BA2A2Z9 1011 aa13.17□□□□□ -0.3
LEMD3-202ENST00000539442 ST5P78524 1137 aa13.17□□□□□ -0.3
LEMD3-202ENST00000539442 DDR1Q08345 913 aa13.17□□□□□ -0.3
LEMD3-202ENST00000539442 MMRN1Q13201 1228 aa13.17□□□□□ -0.3
LEMD3-202ENST00000539442 G3BP1Q13283 466 aaKnown RBP eCLIP13.17□□□□□ -0.3
LEMD3-202ENST00000539442 SF3B3Q15393 1217 aaKnown RBP13.17□□□□□ -0.3
LEMD3-202ENST00000539442 SLC16A10Q8TF71 515 aa13.17□□□□□ -0.3
LEMD3-202ENST00000539442 PA2G4Q9UQ80 394 aaKnown RBP13.17□□□□□ -0.3
LEMD3-202ENST00000539442 MYH3P11055 1940 aa13.17□□□□□ -0.3
LEMD3-202ENST00000539442 CIAO1O76071 339 aa13.16□□□□□ -0.3
LEMD3-202ENST00000539442 ITGA6P23229 1130 aa13.16□□□□□ -0.3
LEMD3-202ENST00000539442 OS9Q13438 667 aaPredicted RBP13.16□□□□□ -0.3
LEMD3-202ENST00000539442 PRR5LQ6MZQ0 368 aa13.16□□□□□ -0.3
LEMD3-202ENST00000539442 RHPN1Q8TCX5 695 aa13.16□□□□□ -0.3
LEMD3-202ENST00000539442 NLRP3Q96P20 1036 aa13.16□□□□□ -0.3
LEMD3-202ENST00000539442 LNPKQ9C0E8 428 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms