RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 KIF4BQ2VIQ3 1234 aa12.39□□□□□ -0.43
USP28-205ENST00000537706 OTUD5Q96G74 571 aa12.39□□□□□ -0.43
USP28-205ENST00000537706 SHTN1A0MZ66 631 aa12.39□□□□□ -0.43
USP28-205ENST00000537706 BTBD11A6QL63 1104 aa12.39□□□□□ -0.43
USP28-205ENST00000537706 HMOX1P09601 288 aa12.39□□□□□ -0.43
USP28-205ENST00000537706 ERO1AQ96HE7 468 aa12.39□□□□□ -0.43
USP28-205ENST00000537706 NLRP3Q96P20 1036 aa12.39□□□□□ -0.43
USP28-205ENST00000537706 GGA3Q9NZ52 723 aa12.39□□□□□ -0.43
USP28-205ENST00000537706 USP16Q9Y5T5 823 aa12.39□□□□□ -0.43
USP28-205ENST00000537706 IBTKQ9P2D0 1353 aaPredicted RBP12.38□□□□□ -0.43
USP28-205ENST00000537706 GNAT3A8MTJ3 354 aa12.38□□□□□ -0.43
USP28-205ENST00000537706 BBOX1O75936 387 aa12.38□□□□□ -0.43
USP28-205ENST00000537706 SNRPA1P09661 255 aaKnown RBP12.38□□□□□ -0.43
USP28-205ENST00000537706 TCIRG1Q13488 830 aa12.38□□□□□ -0.43
USP28-205ENST00000537706 OTOP1Q7RTM1 612 aa12.38□□□□□ -0.43
USP28-205ENST00000537706 GAS2L2Q8NHY3 880 aa12.38□□□□□ -0.43
USP28-205ENST00000537706 POLR3GLQ9BT43 218 aa12.38□□□□□ -0.43
USP28-205ENST00000537706 ZBTB12Q9Y330 459 aaPredicted RBP12.38□□□□□ -0.43
USP28-205ENST00000537706 TTLL12Q14166 644 aaPredicted RBP12.37□□□□□ -0.43
USP28-205ENST00000537706 SP8Q8IXZ3 490 aa12.37□□□□□ -0.43
USP28-205ENST00000537706 ARMC5Q96C12 935 aa12.37□□□□□ -0.43
USP28-205ENST00000537706 HLFQ16534 295 aa12.37□□□□□ -0.43
USP28-205ENST00000537706 SLC4A8Q2Y0W8 1093 aa12.37□□□□□ -0.43
USP28-205ENST00000537706 NBPF11Q86T75 865 aa12.37□□□□□ -0.43
USP28-205ENST00000537706 PTPN22Q9Y2R2 807 aa12.37□□□□□ -0.43
USP28-205ENST00000537706 ERVV-1B6SEH8 477 aa12.36□□□□□ -0.43
USP28-205ENST00000537706 PSMD14O00487 310 aa12.36□□□□□ -0.43
USP28-205ENST00000537706 NF2P35240 595 aa12.36□□□□□ -0.43
USP28-205ENST00000537706 KIF6Q6ZMV9 814 aa12.36□□□□□ -0.43
USP28-205ENST00000537706 PPP1R42Q7Z4L9 355 aa12.36□□□□□ -0.43
USP28-205ENST00000537706 ARHGEF6Q15052 776 aa12.35□□□□□ -0.43
USP28-205ENST00000537706 PAPPA2Q9BXP8 1791 aa12.35□□□□□ -0.43
USP28-205ENST00000537706 YDJCA8MPS7 323 aa12.35□□□□□ -0.43
USP28-205ENST00000537706 RBM27Q9P2N5 1060 aaKnown RBP12.35□□□□□ -0.43
USP28-205ENST00000537706 ANKRD13DQ6ZTN6 518 aa12.34□□□□□ -0.43
USP28-205ENST00000537706 TMC4Q7Z404 712 aa12.34□□□□□ -0.43
USP28-205ENST00000537706 IL17REQ8NFR9 667 aa12.34□□□□□ -0.43
USP28-205ENST00000537706 DPF3Q92784 378 aa12.34□□□□□ -0.43
USP28-205ENST00000537706 UBE2Q2LH0YL09 131 aa12.33□□□□□ -0.44
USP28-205ENST00000537706 INHBEP58166 350 aa12.33□□□□□ -0.44
USP28-205ENST00000537706 EFCC1Q9HA90 598 aa12.33□□□□□ -0.44
USP28-205ENST00000537706 ABCC4O15439 1325 aa12.33□□□□□ -0.44
USP28-205ENST00000537706 MKRN3Q13064 507 aaKnown RBP12.33□□□□□ -0.44
USP28-205ENST00000537706 WASHC4Q2M389 1173 aa12.33□□□□□ -0.44
USP28-205ENST00000537706 ANGEL2Q5VTE6 544 aaKnown RBP12.33□□□□□ -0.44
USP28-205ENST00000537706 EYA3Q99504 573 aa12.33□□□□□ -0.44
USP28-205ENST00000537706 MANSC4A6NHS7 340 aaPredicted RBP12.32□□□□□ -0.44
USP28-205ENST00000537706 EGFRP00533 1210 aa12.32□□□□□ -0.44
USP28-205ENST00000537706 DDX46Q7L014 1031 aaKnown RBP12.32□□□□□ -0.44
USP28-205ENST00000537706 ARMC9Q7Z3E5 817 aa12.32□□□□□ -0.44
USP28-205ENST00000537706 MAP3K15Q6ZN16 1313 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 A0A1W2PPC1 479 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 G3V3G9 751 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 KCNQ3O43525 872 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 GPTP24298 496 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 SCARF1Q14162 830 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 PARP10Q53GL7 1025 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 DCAF8Q5TAQ9 597 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 SUSD4Q5VX71 490 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 OTUD7BQ6GQQ9 843 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 NECTIN2Q92692 538 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 RBBP6Q7Z6E9 1792 aaKnown RBP12.31□□□□□ -0.44
USP28-205ENST00000537706 NBPF26B4DH59 902 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 DIAPH1O60610 1272 aaKnown RBP12.31□□□□□ -0.44
USP28-205ENST00000537706 SLC9C1Q4G0N8 1177 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 NBPF10Q6P3W6 841 aaKnown RBP12.31□□□□□ -0.44
USP28-205ENST00000537706 SLC51AQ86UW1 340 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 NGEFQ8N5V2 710 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 DBNDD1Q9H9R9 158 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 NR2E3Q9Y5X4 410 aa12.31□□□□□ -0.44
USP28-205ENST00000537706 ZNF333Q96JL9 665 aa12.3□□□□□ -0.44
USP28-205ENST00000537706 HTATIP2Q9BUP3 242 aa12.3□□□□□ -0.44
USP28-205ENST00000537706 R3HDMLQ9H3Y0 253 aa12.3□□□□□ -0.44
USP28-205ENST00000537706 ECE2O60344 883 aa12.29□□□□□ -0.44
USP28-205ENST00000537706 NTSR2O95665 410 aa12.29□□□□□ -0.44
USP28-205ENST00000537706 CD99L2Q8TCZ2 262 aa12.29□□□□□ -0.44
USP28-205ENST00000537706 UTP14AQ9BVJ6 771 aaKnown RBP12.29□□□□□ -0.44
USP28-205ENST00000537706 GRAPQ13588 217 aa12.29□□□□□ -0.44
USP28-205ENST00000537706 MOB2Q70IA6 237 aa12.29□□□□□ -0.44
USP28-205ENST00000537706 GRAPLQ8TC17 118 aaPredicted RBP12.29□□□□□ -0.44
USP28-205ENST00000537706 C6orf229H3BNL8 230 aa12.28□□□□□ -0.44
USP28-205ENST00000537706 RIMBP2O15034 1052 aa12.28□□□□□ -0.44
USP28-205ENST00000537706 SLC10A5Q5PT55 438 aa12.28□□□□□ -0.44
USP28-205ENST00000537706 IFNL1Q8IU54 200 aa12.28□□□□□ -0.44
USP28-205ENST00000537706 RTF1Q92541 710 aaKnown RBP12.28□□□□□ -0.44
USP28-205ENST00000537706 PANK3Q9H999 370 aa12.28□□□□□ -0.44
USP28-205ENST00000537706 ZNF609O15014 1411 aa12.28□□□□□ -0.44
USP28-205ENST00000537706 UBN2Q6ZU65 1347 aa12.28□□□□□ -0.44
USP28-205ENST00000537706 C3orf67Q6ZVT6 689 aa12.27□□□□□ -0.44
USP28-205ENST00000537706 AGBL3Q8NEM8 1001 aa12.27□□□□□ -0.44
USP28-205ENST00000537706 CEMIPQ8WUJ3 1361 aa12.27□□□□□ -0.45
USP28-205ENST00000537706 VIL1P09327 827 aaKnown RBP12.27□□□□□ -0.45
USP28-205ENST00000537706 SP3Q02447 781 aa12.27□□□□□ -0.45
USP28-205ENST00000537706 SPRYD7Q5W111 196 aa12.27□□□□□ -0.45
USP28-205ENST00000537706 ZNF34Q8IZ26 560 aa12.27□□□□□ -0.45
USP28-205ENST00000537706 COL25A1Q9BXS0 654 aaPredicted RBP12.27□□□□□ -0.45
USP28-205ENST00000537706 KNSTRNQ9Y448 316 aa12.27□□□□□ -0.45
USP28-205ENST00000537706 ASTN2O75129 1339 aaPredicted RBP12.26□□□□□ -0.45
USP28-205ENST00000537706 ZNF280AP59817 542 aaPredicted RBP12.26□□□□□ -0.45
USP28-205ENST00000537706 ZBTB3Q9H5J0 574 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms