RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 DDNO94850 711 aaPredicted RBP18.94■□□□□ 0.62
USP28-204ENST00000537642 VEGFAP15692 232 aaPredicted RBP18.94■□□□□ 0.62
USP28-204ENST00000537642 C16orf71Q8IYS4 520 aaPredicted RBP18.94■□□□□ 0.62
USP28-204ENST00000537642 RBM46Q8TBY0 533 aaKnown RBP18.94■□□□□ 0.62
USP28-204ENST00000537642 NEURL1BA8MQ27 555 aa18.93■□□□□ 0.62
USP28-204ENST00000537642 NEXNQ0ZGT2 675 aa18.93■□□□□ 0.62
USP28-204ENST00000537642 FKBP5Q13451 457 aaPredicted RBP18.93■□□□□ 0.62
USP28-204ENST00000537642 CWF19L2Q2TBE0 894 aaKnown RBP18.93■□□□□ 0.62
USP28-204ENST00000537642 CELF1Q92879 486 aaKnown RBP18.93■□□□□ 0.62
USP28-204ENST00000537642 TMX4Q9H1E5 349 aaPredicted RBP18.93■□□□□ 0.62
USP28-204ENST00000537642 LRRC37AA6NMS7 1700 aa18.93■□□□□ 0.62
USP28-204ENST00000537642 ZNF541Q9H0D2 1346 aa18.93■□□□□ 0.62
USP28-204ENST00000537642 FZD9O00144 591 aa18.92■□□□□ 0.62
USP28-204ENST00000537642 PDE8AO60658 829 aa18.92■□□□□ 0.62
USP28-204ENST00000537642 HSP90B1P14625 803 aaKnown RBP18.92■□□□□ 0.62
USP28-204ENST00000537642 CDHR2Q9BYE9 1310 aa18.92■□□□□ 0.62
USP28-204ENST00000537642 HSPA6P17066 643 aa18.91■□□□□ 0.62
USP28-204ENST00000537642 TMC4Q7Z404 712 aa18.91■□□□□ 0.62
USP28-204ENST00000537642 DNAAF4Q8WXU2 420 aa18.91■□□□□ 0.62
USP28-204ENST00000537642 RTFDC1Q9BY42 306 aaPredicted RBP18.91■□□□□ 0.62
USP28-204ENST00000537642 E9PSI1 815 aa18.9■□□□□ 0.62
USP28-204ENST00000537642 DPP8Q6V1X1 898 aaPredicted RBP18.9■□□□□ 0.62
USP28-204ENST00000537642 LARGE2Q8N3Y3 721 aa18.9■□□□□ 0.62
USP28-204ENST00000537642 MPNDQ8N594 471 aa18.9■□□□□ 0.62
USP28-204ENST00000537642 JDP2Q8WYK2 163 aa18.9■□□□□ 0.62
USP28-204ENST00000537642 SEC31BQ9NQW1 1179 aa18.9■□□□□ 0.62
USP28-204ENST00000537642 MYH3P11055 1940 aa18.9■□□□□ 0.62
USP28-204ENST00000537642 SLFN5Q08AF3 891 aa18.89■□□□□ 0.61
USP28-204ENST00000537642 CCDC152Q4G0S7 254 aa18.89■□□□□ 0.61
USP28-204ENST00000537642 DUOX1Q9NRD9 1551 aa18.89■□□□□ 0.61
USP28-204ENST00000537642 F6X3S4 739 aa18.88■□□□□ 0.61
USP28-204ENST00000537642 H7C1W4 665 aa18.88■□□□□ 0.61
USP28-204ENST00000537642 PPIP5K2O43314 1243 aa18.88■□□□□ 0.61
USP28-204ENST00000537642 RPS8P62241 208 aaKnown RBP18.88■□□□□ 0.61
USP28-204ENST00000537642 FSTL1Q12841 308 aa18.88■□□□□ 0.61
USP28-204ENST00000537642 GCKRQ14397 625 aa18.88■□□□□ 0.61
USP28-204ENST00000537642 AOC3Q16853 763 aa18.88■□□□□ 0.61
USP28-204ENST00000537642 DIEXFQ68CQ4 756 aaKnown RBP18.88■□□□□ 0.61
USP28-204ENST00000537642 SUPT20HQ8NEM7 779 aa18.88■□□□□ 0.61
USP28-204ENST00000537642 LINS1Q8NG48 757 aa18.88■□□□□ 0.61
USP28-204ENST00000537642 CDCA7LQ96GN5 454 aa18.88■□□□□ 0.61
USP28-204ENST00000537642 L3MBTL3Q96JM7 780 aaPredicted RBP18.88■□□□□ 0.61
USP28-204ENST00000537642 VPS33BQ9H267 617 aa18.88■□□□□ 0.61
USP28-204ENST00000537642 SCN4AP35499 1836 aa18.88■□□□□ 0.61
USP28-204ENST00000537642 CTSWP56202 376 aa18.87■□□□□ 0.61
USP28-204ENST00000537642 CCDC85AQ96PX6 553 aaPredicted RBP18.87■□□□□ 0.61
USP28-204ENST00000537642 UBE3BQ7Z3V4 1068 aa18.86■□□□□ 0.61
USP28-204ENST00000537642 NIM1KQ8IY84 436 aa18.86■□□□□ 0.61
USP28-204ENST00000537642 MIER1Q8N108 512 aa18.86■□□□□ 0.61
USP28-204ENST00000537642 SMC1BQ8NDV3 1235 aa18.86■□□□□ 0.61
USP28-204ENST00000537642 LTBP1Q14766 1721 aa18.86■□□□□ 0.61
USP28-204ENST00000537642 CASP7P55210 303 aa18.85■□□□□ 0.61
USP28-204ENST00000537642 EIF6P56537 245 aaKnown RBP18.85■□□□□ 0.61
USP28-204ENST00000537642 GPSM2P81274 684 aa18.85■□□□□ 0.61
USP28-204ENST00000537642 KIAA2012Q0VF49 1180 aa18.85■□□□□ 0.61
USP28-204ENST00000537642 GPC2Q8N158 579 aa18.85■□□□□ 0.61
USP28-204ENST00000537642 TTLL11Q8NHH1 800 aa18.85■□□□□ 0.61
USP28-204ENST00000537642 CEP350Q5VT06 3117 aa18.85■□□□□ 0.61
USP28-204ENST00000537642 IQCA1LA6NCM1 817 aa18.84■□□□□ 0.61
USP28-204ENST00000537642 BEND3Q5T5X7 828 aa18.84■□□□□ 0.61
USP28-204ENST00000537642 TRMT2AQ8IZ69 625 aaKnown RBP18.84■□□□□ 0.61
USP28-204ENST00000537642 NSFL1CQ9UNZ2 370 aaKnown RBP18.84■□□□□ 0.61
USP28-204ENST00000537642 POTEIP0CG38 1075 aa18.83■□□□□ 0.6
USP28-204ENST00000537642 POTEJP0CG39 1038 aa18.83■□□□□ 0.6
USP28-204ENST00000537642 MRPL50Q8N5N7 158 aaKnown RBP18.83■□□□□ 0.6
USP28-204ENST00000537642 PLA2G12BQ9BX93 195 aa18.83■□□□□ 0.6
USP28-204ENST00000537642 TAF1DQ9H5J8 278 aaPredicted RBP18.83■□□□□ 0.6
USP28-204ENST00000537642 GREM2Q9H772 168 aa18.83■□□□□ 0.6
USP28-204ENST00000537642 POLLQ9UGP5 575 aa18.83■□□□□ 0.6
USP28-204ENST00000537642 GJA3Q9Y6H8 435 aa18.83■□□□□ 0.6
USP28-204ENST00000537642 RTL9Q8NET4 1388 aa18.82■□□□□ 0.6
USP28-204ENST00000537642 SPEF2Q9C093 1822 aa18.82■□□□□ 0.6
USP28-204ENST00000537642 ANKRD18AQ8IVF6 992 aa18.82■□□□□ 0.6
USP28-204ENST00000537642 HACL1Q9UJ83 578 aa18.82■□□□□ 0.6
USP28-204ENST00000537642 ZNRF3Q9ULT6 936 aa18.82■□□□□ 0.6
USP28-204ENST00000537642 APLP1P51693 650 aa18.81■□□□□ 0.6
USP28-204ENST00000537642 SSH1Q8WYL5 1049 aa18.81■□□□□ 0.6
USP28-204ENST00000537642 PODXL2Q9NZ53 605 aa18.81■□□□□ 0.6
USP28-204ENST00000537642 C6orf229H3BNL8 230 aa18.8■□□□□ 0.6
USP28-204ENST00000537642 CXCL9Q07325 125 aa18.8■□□□□ 0.6
USP28-204ENST00000537642 WASHC4Q2M389 1173 aa18.8■□□□□ 0.6
USP28-204ENST00000537642 TBC1D16Q8TBP0 767 aa18.8■□□□□ 0.6
USP28-204ENST00000537642 GPR101Q96P66 508 aaPredicted RBP18.8■□□□□ 0.6
USP28-204ENST00000537642 CDC5LQ99459 802 aaKnown RBP18.8■□□□□ 0.6
USP28-204ENST00000537642 YDJCA8MPS7 323 aa18.79■□□□□ 0.6
USP28-204ENST00000537642 CSF1RP07333 972 aa18.79■□□□□ 0.6
USP28-204ENST00000537642 EPHX2P34913 555 aa18.79■□□□□ 0.6
USP28-204ENST00000537642 SCNN1DP51172 638 aa18.79■□□□□ 0.6
USP28-204ENST00000537642 SLC4A10Q6U841 1118 aa18.79■□□□□ 0.6
USP28-204ENST00000537642 RIMBP2O15034 1052 aa18.78■□□□□ 0.6
USP28-204ENST00000537642 FAM161AQ3B820 660 aa18.78■□□□□ 0.6
USP28-204ENST00000537642 CHADLQ6NUI6 762 aa18.78■□□□□ 0.6
USP28-204ENST00000537642 BCL2L13Q9BXK5 485 aa18.78■□□□□ 0.6
USP28-204ENST00000537642 ANKIB1Q9P2G1 1089 aa18.78■□□□□ 0.6
USP28-204ENST00000537642 ADAMTSL1Q8N6G6 1762 aa18.78■□□□□ 0.6
USP28-204ENST00000537642 ALDH1L1O75891 902 aa18.77■□□□□ 0.6
USP28-204ENST00000537642 UFL1O94874 794 aa18.77■□□□□ 0.6
USP28-204ENST00000537642 ALDH1L2Q3SY69 923 aa18.77■□□□□ 0.6
USP28-204ENST00000537642 EAPPQ56P03 285 aaPredicted RBP18.77■□□□□ 0.6
USP28-204ENST00000537642 CIAPIN1Q6FI81 312 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms