RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 C11orf16Q9NQ32 467 aa7.15□□□□□ -1.26
USP48-215ENST00000534705 PALM3A6NDB9 673 aaPredicted RBP7.14□□□□□ -1.27
USP48-215ENST00000534705 DLL1O00548 723 aa7.14□□□□□ -1.27
USP48-215ENST00000534705 TAL1P17542 331 aaPredicted RBP7.14□□□□□ -1.27
USP48-215ENST00000534705 TRPM4Q8TD43 1214 aa7.14□□□□□ -1.27
USP48-215ENST00000534705 CALR3Q96L12 384 aaKnown RBP7.14□□□□□ -1.27
USP48-215ENST00000534705 ATAD2Q6PL18 1390 aa7.13□□□□□ -1.27
USP48-215ENST00000534705 TGFBR3LH3BV60 316 aa7.13□□□□□ -1.27
USP48-215ENST00000534705 PERM1Q5SV97 790 aa7.13□□□□□ -1.27
USP48-215ENST00000534705 C2orf49Q9BVC5 232 aaPredicted RBP7.13□□□□□ -1.27
USP48-215ENST00000534705 RNF114Q9Y508 228 aa7.13□□□□□ -1.27
USP48-215ENST00000534705 USP17L3A6NCW0 530 aa7.12□□□□□ -1.27
USP48-215ENST00000534705 USP17L4A6NCW7 530 aa7.12□□□□□ -1.27
USP48-215ENST00000534705 USP17L2Q6R6M4 530 aa7.12□□□□□ -1.27
USP48-215ENST00000534705 DHX32Q7L7V1 743 aaKnown RBP7.12□□□□□ -1.27
USP48-215ENST00000534705 USP17L1Q7RTZ2 530 aa7.12□□□□□ -1.27
USP48-215ENST00000534705 C14orf37Q86TY3 774 aa7.12□□□□□ -1.27
USP48-215ENST00000534705 SRA1Q9HD15 236 aaKnown RBP7.12□□□□□ -1.27
USP48-215ENST00000534705 KIAA1024Q9UPX6 916 aa7.12□□□□□ -1.27
USP48-215ENST00000534705 KIAA1324LA8MWY0 1029 aaPredicted RBP7.11□□□□□ -1.27
USP48-215ENST00000534705 ZBTB42B2RXF5 422 aa7.11□□□□□ -1.27
USP48-215ENST00000534705 DEAF1O75398 565 aaPredicted RBP7.11□□□□□ -1.27
USP48-215ENST00000534705 GP2P55259 537 aaKnown RBP7.11□□□□□ -1.27
USP48-215ENST00000534705 CLDN10P78369 228 aa7.11□□□□□ -1.27
USP48-215ENST00000534705 GPLD1P80108 840 aa7.11□□□□□ -1.27
USP48-215ENST00000534705 RTN1Q16799 776 aa7.11□□□□□ -1.27
USP48-215ENST00000534705 RAXQ9Y2V3 346 aa7.11□□□□□ -1.27
USP48-215ENST00000534705 F8W735 103 aaPredicted RBP7.1□□□□□ -1.27
USP48-215ENST00000534705 C21orf2O43822 256 aa7.1□□□□□ -1.27
USP48-215ENST00000534705 IGLV1-40P01703 118 aa7.1□□□□□ -1.27
USP48-215ENST00000534705 FZD5Q13467 585 aa7.1□□□□□ -1.27
USP48-215ENST00000534705 LCE1DQ5T752 114 aa7.1□□□□□ -1.27
USP48-215ENST00000534705 MAP4K3Q8IVH8 894 aa7.1□□□□□ -1.27
USP48-215ENST00000534705 SIX5Q8N196 739 aa7.1□□□□□ -1.27
USP48-215ENST00000534705 OGFOD1Q8N543 542 aa7.1□□□□□ -1.27
USP48-215ENST00000534705 TSEN2Q8NCE0 465 aaKnown RBP7.1□□□□□ -1.27
USP48-215ENST00000534705 NGLY1Q96IV0 654 aa7.1□□□□□ -1.27
USP48-215ENST00000534705 PPP1R12CQ9BZL4 782 aa7.1□□□□□ -1.27
USP48-215ENST00000534705 DMGDHQ9UI17 866 aaKnown RBP7.1□□□□□ -1.27
USP48-215ENST00000534705 MAFBQ9Y5Q3 323 aaPredicted RBP7.1□□□□□ -1.27
USP48-215ENST00000534705 OAS3Q9Y6K5 1087 aaKnown RBP7.1□□□□□ -1.27
USP48-215ENST00000534705 INTS5Q6P9B9 1019 aaKnown RBP7.09□□□□□ -1.27
USP48-215ENST00000534705 SMG9Q9H0W8 520 aaKnown RBP7.09□□□□□ -1.27
USP48-215ENST00000534705 ZNF777Q9ULD5 760 aaPredicted RBP7.09□□□□□ -1.27
USP48-215ENST00000534705 ALX3O95076 343 aa7.08□□□□□ -1.28
USP48-215ENST00000534705 RARAP10276 462 aa7.08□□□□□ -1.28
USP48-215ENST00000534705 GRIK1P39086 918 aa7.08□□□□□ -1.28
USP48-215ENST00000534705 PLAURQ03405 335 aa7.08□□□□□ -1.28
USP48-215ENST00000534705 CHMP7Q8WUX9 453 aaPredicted RBP7.08□□□□□ -1.28
USP48-215ENST00000534705 SCG3Q8WXD2 468 aaKnown RBP7.08□□□□□ -1.28
USP48-215ENST00000534705 KRTAP4-7Q9BYR0 210 aa7.08□□□□□ -1.28
USP48-215ENST00000534705 TFIP11Q9UBB9 837 aaKnown RBP7.08□□□□□ -1.28
USP48-215ENST00000534705 STOML1Q9UBI4 398 aa7.08□□□□□ -1.28
USP48-215ENST00000534705 MED26O95402 600 aa7.07□□□□□ -1.28
USP48-215ENST00000534705 INPP5BP32019 993 aa7.07□□□□□ -1.28
USP48-215ENST00000534705 NRLP54845 237 aa7.07□□□□□ -1.28
USP48-215ENST00000534705 Q6ZS46 218 aa7.07□□□□□ -1.28
USP48-215ENST00000534705 KRT25Q7Z3Z0 450 aa7.07□□□□□ -1.28
USP48-215ENST00000534705 ZFATQ9P243 1243 aa7.07□□□□□ -1.28
USP48-215ENST00000534705 MKRN1Q9UHC7 482 aaKnown RBP7.07□□□□□ -1.28
USP48-215ENST00000534705 IDH3AP50213 366 aa7.06□□□□□ -1.28
USP48-215ENST00000534705 ARSDP51689 593 aa7.06□□□□□ -1.28
USP48-215ENST00000534705 MLLT1Q03111 559 aaPredicted RBP7.06□□□□□ -1.28
USP48-215ENST00000534705 CFAP70Q5T0N1 1121 aa7.06□□□□□ -1.28
USP48-215ENST00000534705 CACTIN-AS1Q8N1I8 211 aa7.06□□□□□ -1.28
USP48-215ENST00000534705 IFT43Q96FT9 208 aa7.06□□□□□ -1.28
USP48-215ENST00000534705 DHX15O43143 795 aaKnown RBP7.05□□□□□ -1.28
USP48-215ENST00000534705 TGFB1P01137 390 aa7.05□□□□□ -1.28
USP48-215ENST00000534705 GLB1P16278 677 aa7.05□□□□□ -1.28
USP48-215ENST00000534705 EIF2AK2P19525 551 aaKnown RBP7.05□□□□□ -1.28
USP48-215ENST00000534705 TARSP26639 723 aaKnown RBP7.05□□□□□ -1.28
USP48-215ENST00000534705 BCS1LQ9Y276 419 aa7.05□□□□□ -1.28
USP48-215ENST00000534705 SASH3O75995 380 aa7.04□□□□□ -1.28
USP48-215ENST00000534705 SEC13P55735 322 aa7.04□□□□□ -1.28
USP48-215ENST00000534705 IL22RA1Q8N6P7 574 aa7.04□□□□□ -1.28
USP48-215ENST00000534705 MUC3BQ9H195 1237 aa7.04□□□□□ -1.28
USP48-215ENST00000534705 RBSNQ9H1K0 784 aa7.04□□□□□ -1.28
USP48-215ENST00000534705 TLR7Q9NYK1 1049 aaKnown RBP7.04□□□□□ -1.28
USP48-215ENST00000534705 SERPINA10Q9UK55 444 aa7.04□□□□□ -1.28
USP48-215ENST00000534705 DKK1O94907 266 aa7.03□□□□□ -1.28
USP48-215ENST00000534705 GHRHP01286 108 aa7.03□□□□□ -1.28
USP48-215ENST00000534705 GRNP28799 593 aaKnown RBP7.03□□□□□ -1.28
USP48-215ENST00000534705 HFE2Q6ZVN8 426 aa7.03□□□□□ -1.28
USP48-215ENST00000534705 PLD4Q96BZ4 506 aa7.03□□□□□ -1.28
USP48-215ENST00000534705 CCDC97Q96F63 343 aaPredicted RBP7.03□□□□□ -1.28
USP48-215ENST00000534705 ZNF594Q96JF6 807 aaPredicted RBP7.03□□□□□ -1.28
USP48-215ENST00000534705 CEP41Q9BYV8 373 aa7.03□□□□□ -1.28
USP48-215ENST00000534705 LOC102724428A0A0B4J2F2 783 aa7.02□□□□□ -1.29
USP48-215ENST00000534705 FAM196BA6NMK8 535 aa7.02□□□□□ -1.29
USP48-215ENST00000534705 WNT11O96014 354 aa7.02□□□□□ -1.29
USP48-215ENST00000534705 SPINK2P20155 84 aa7.02□□□□□ -1.29
USP48-215ENST00000534705 LMOD1P29536 600 aaPredicted RBP7.02□□□□□ -1.29
USP48-215ENST00000534705 SIK1P57059 783 aa7.02□□□□□ -1.29
USP48-215ENST00000534705 KANK4Q5T7N3 995 aaPredicted RBP7.02□□□□□ -1.29
USP48-215ENST00000534705 GDF6Q6KF10 455 aaPredicted RBP7.02□□□□□ -1.29
USP48-215ENST00000534705 ZDHHC13Q8IUH4 622 aa7.02□□□□□ -1.29
USP48-215ENST00000534705 MICAL2O94851 1124 aa7.01□□□□□ -1.29
USP48-215ENST00000534705 EGFRP00533 1210 aa7.01□□□□□ -1.29
USP48-215ENST00000534705 PSAPP07602 524 aa7.01□□□□□ -1.29
USP48-215ENST00000534705 IGFBP4P22692 258 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms