RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, human

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSDE1-216	ENST00000534389	GPR161	Q8N6U8	529 aa	Known RBP	4.4	□□□□□ -1.71
CSDE1-216	ENST00000534389	NANOS1	Q8WY41	292 aa	Known RBP	4.4	□□□□□ -1.71
CSDE1-216	ENST00000534389	SPACA7	Q96KW9	195 aa		4.4	□□□□□ -1.71
CSDE1-216	ENST00000534389	BCL2L13	Q9BXK5	485 aa		4.4	□□□□□ -1.71
CSDE1-216	ENST00000534389	CFHR5	Q9BXR6	569 aa		4.4	□□□□□ -1.71
CSDE1-216	ENST00000534389	NIF3L1	Q9GZT8	377 aa		4.4	□□□□□ -1.71
CSDE1-216	ENST00000534389	RBSN	Q9H1K0	784 aa		4.4	□□□□□ -1.71
CSDE1-216	ENST00000534389	OPLAH	O14841	1288 aa		4.39	□□□□□ -1.71
CSDE1-216	ENST00000534389	NFKB1	P19838	968 aa		4.39	□□□□□ -1.71
CSDE1-216	ENST00000534389	GMPR	P36959	345 aa		4.39	□□□□□ -1.71
CSDE1-216	ENST00000534389	FAM26D	Q5JW98	314 aa		4.39	□□□□□ -1.71
CSDE1-216	ENST00000534389	LCE2A	Q5TA79	106 aa	Predicted RBP	4.39	□□□□□ -1.71
CSDE1-216	ENST00000534389	PDE12	Q6L8Q7	609 aa	Known RBP	4.39	□□□□□ -1.71
CSDE1-216	ENST00000534389	TMC7	Q7Z402	723 aa		4.39	□□□□□ -1.71
CSDE1-216	ENST00000534389	NLRP13	Q86W25	1043 aa		4.39	□□□□□ -1.71
CSDE1-216	ENST00000534389	MICALL1	Q8N3F8	863 aa		4.39	□□□□□ -1.71
CSDE1-216	ENST00000534389	KLRG1	Q96E93	195 aa		4.39	□□□□□ -1.71
CSDE1-216	ENST00000534389	ASB16	Q96NS5	453 aa		4.39	□□□□□ -1.71
CSDE1-216	ENST00000534389	UBE2O	Q9C0C9	1292 aa	Known RBP	4.39	□□□□□ -1.71
CSDE1-216	ENST00000534389	ELP3	Q9H9T3	547 aa		4.39	□□□□□ -1.71
CSDE1-216	ENST00000534389	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	4.39	□□□□□ -1.71
CSDE1-216	ENST00000534389	WASHC2A	Q641Q2	1341 aa		4.39	□□□□□ -1.71
CSDE1-216	ENST00000534389		A6NHS1	94 aa		4.38	□□□□□ -1.71
CSDE1-216	ENST00000534389	GHRH	P01286	108 aa		4.38	□□□□□ -1.71
CSDE1-216	ENST00000534389	CES1	P23141	567 aa		4.38	□□□□□ -1.71
CSDE1-216	ENST00000534389	TARS	P26639	723 aa	Known RBP	4.38	□□□□□ -1.71
CSDE1-216	ENST00000534389	XPC	Q01831	940 aa	Predicted RBP	4.38	□□□□□ -1.71
CSDE1-216	ENST00000534389	PCSK7	Q16549	785 aa		4.38	□□□□□ -1.71
CSDE1-216	ENST00000534389	NCAPG2	Q86XI2	1143 aa		4.38	□□□□□ -1.71
CSDE1-216	ENST00000534389	SNX29	Q8TEQ0	813 aa		4.38	□□□□□ -1.71
CSDE1-216	ENST00000534389	C7orf43	Q8WVR3	580 aa		4.38	□□□□□ -1.71
CSDE1-216	ENST00000534389	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	4.38	□□□□□ -1.71
CSDE1-216	ENST00000534389	PMEPA1	Q969W9	287 aa		4.38	□□□□□ -1.71
CSDE1-216	ENST00000534389	COL25A1	Q9BXS0	654 aa	Predicted RBP	4.38	□□□□□ -1.71
CSDE1-216	ENST00000534389	RBCK1	Q9BYM8	510 aa		4.38	□□□□□ -1.71
CSDE1-216	ENST00000534389	MRS2	Q9HD23	443 aa		4.38	□□□□□ -1.71
CSDE1-216	ENST00000534389	NLRP2	Q9NX02	1062 aa		4.38	□□□□□ -1.71
CSDE1-216	ENST00000534389	ABI2	Q9NYB9	513 aa	Predicted RBP	4.38	□□□□□ -1.71
CSDE1-216	ENST00000534389	PNMA6F	A0A0J9YX94	578 aa		4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	CPNE3	O75131	537 aa	Known RBP	4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	ALAS2	P22557	587 aa		4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	AMPD1	P23109	780 aa		4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	MAP2K3	P46734	347 aa		4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	RBM25	P49756	843 aa	Known RBP	4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	PCBP4	P57723	403 aa	Known RBP	4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	KRT76	Q01546	638 aa		4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	PLAUR	Q03405	335 aa		4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	UBAP2L	Q14157	1087 aa	Known RBP	4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	GAS6	Q14393	721 aa		4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	RNFT1	Q5M7Z0	435 aa		4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	SYT9	Q86SS6	491 aa		4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	GJD3	Q8N144	294 aa		4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	GIPC2	Q8TF65	315 aa		4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	GGNBP2	Q9H3C7	697 aa		4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	EFCC1	Q9HA90	598 aa		4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	DMGDH	Q9UI17	866 aa	Known RBP	4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	NOP58	Q9Y2X3	529 aa	Known RBP	4.37	□□□□□ -1.71
CSDE1-216	ENST00000534389	EFS	O43281	561 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	GADD45B	O75293	160 aa	Predicted RBP	4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	LDHB	P07195	334 aa	Known RBP	4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	EIF2AK2	P19525	551 aa	Known RBP	4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	ADH6	P28332	368 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	KCNQ4	P56696	695 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	CTBS	Q01459	385 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	HYAL2	Q12891	473 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	TRIP4	Q15650	581 aa	Predicted RBP	4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	CNTNAP3B	Q96NU0	1288 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	NSUN5	Q96P11	429 aa	Known RBP	4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	SLC30A3	Q99726	388 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	CNTNAP3	Q9BZ76	1288 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	GSX2	Q9BZM3	304 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	C11orf16	Q9NQ32	467 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	STRN4	Q9NRL3	753 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	MBIP	Q9NS73	344 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	PPP4R2	Q9NY27	417 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	KANSL3	Q9P2N6	904 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	FOXD3	Q9UJU5	478 aa	Predicted RBP	4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	CDK11A	Q9UQ88	783 aa	Predicted RBP	4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	AMOTL2	Q9Y2J4	779 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	KCNMB2	Q9Y691	235 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	WASHC2C	Q9Y4E1	1318 aa		4.36	□□□□□ -1.71
CSDE1-216	ENST00000534389	GPR182	O15218	404 aa		4.35	□□□□□ -1.71
CSDE1-216	ENST00000534389	TNFRSF21	O75509	655 aa		4.35	□□□□□ -1.71
CSDE1-216	ENST00000534389	RANGAP1	P46060	587 aa	Predicted RBP	4.35	□□□□□ -1.71
CSDE1-216	ENST00000534389	MAP3K10	Q02779	954 aa		4.35	□□□□□ -1.71
CSDE1-216	ENST00000534389	MLLT1	Q03111	559 aa	Predicted RBP	4.35	□□□□□ -1.71
CSDE1-216	ENST00000534389	ORC1	Q13415	861 aa		4.35	□□□□□ -1.71
CSDE1-216	ENST00000534389	FAM182B	Q5T319	152 aa		4.35	□□□□□ -1.71
CSDE1-216	ENST00000534389	ALG1L	Q6GMV1	187 aa		4.35	□□□□□ -1.71
CSDE1-216	ENST00000534389	DHX32	Q7L7V1	743 aa	Known RBP	4.35	□□□□□ -1.71
CSDE1-216	ENST00000534389	CSRNP1	Q96S65	589 aa		4.35	□□□□□ -1.71
CSDE1-216	ENST00000534389	NDFIP2	Q9NV92	336 aa		4.35	□□□□□ -1.71
CSDE1-216	ENST00000534389	TMEM63C	Q9P1W3	806 aa		4.35	□□□□□ -1.71
CSDE1-216	ENST00000534389	NEURL1B	A8MQ27	555 aa		4.34	□□□□□ -1.71
CSDE1-216	ENST00000534389	EIF1AY	O14602	144 aa	Known RBP	4.34	□□□□□ -1.71
CSDE1-216	ENST00000534389	TREH	O43280	583 aa		4.34	□□□□□ -1.71
CSDE1-216	ENST00000534389	WIPF1	O43516	503 aa		4.34	□□□□□ -1.71
CSDE1-216	ENST00000534389	MMP20	O60882	483 aa		4.34	□□□□□ -1.71
CSDE1-216	ENST00000534389	POLR3D	P05423	398 aa	Predicted RBP	4.34	□□□□□ -1.71
CSDE1-216	ENST00000534389	P4HB	P07237	508 aa	Known RBP	4.34	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms