RNA–Protein interactions for RNA: ENST00000532737.1

USP48-214, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 680 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-214ENST00000532737 CLUAP1Q96AJ1 413 aa31.35■■■□□ 2.61
USP48-214ENST00000532737 PLA2G12BQ9BX93 195 aa31.35■■■□□ 2.61
USP48-214ENST00000532737 LAMB2P55268 1798 aa31.35■■■□□ 2.61
USP48-214ENST00000532737 C21orf2O43822 256 aa31.34■■■□□ 2.61
USP48-214ENST00000532737 NBPF7P0C2Y1 421 aaPredicted RBP31.34■■■□□ 2.61
USP48-214ENST00000532737 DDX46Q7L014 1031 aaKnown RBP31.34■■■□□ 2.61
USP48-214ENST00000532737 ZNF526Q8TF50 670 aaPredicted RBP31.34■■■□□ 2.61
USP48-214ENST00000532737 C7orf43Q8WVR3 580 aa31.34■■■□□ 2.61
USP48-214ENST00000532737 USP44Q9H0E7 712 aa31.34■■■□□ 2.61
USP48-214ENST00000532737 UTYO14607 1347 aa31.33■■■□□ 2.61
USP48-214ENST00000532737 CTSWP56202 376 aa31.33■■■□□ 2.61
USP48-214ENST00000532737 INTS3Q68E01 1043 aaKnown RBP31.33■■■□□ 2.61
USP48-214ENST00000532737 CCDC85AQ96PX6 553 aaPredicted RBP31.33■■■□□ 2.61
USP48-214ENST00000532737 SLX4Q8IY92 1834 aa31.33■■■□□ 2.61
USP48-214ENST00000532737 TTLL11Q8NHH1 800 aa31.32■■■□□ 2.6
USP48-214ENST00000532737 CCDC152Q4G0S7 254 aa31.31■■■□□ 2.6
USP48-214ENST00000532737 ARHGAP27Q6ZUM4 889 aa31.31■■■□□ 2.6
USP48-214ENST00000532737 FOXO4P98177 505 aa31.3■■■□□ 2.6
USP48-214ENST00000532737 GRAPQ13588 217 aa31.3■■■□□ 2.6
USP48-214ENST00000532737 EPHA10Q5JZY3 1008 aa31.3■■■□□ 2.6
USP48-214ENST00000532737 GRAPLQ8TC17 118 aaPredicted RBP31.3■■■□□ 2.6
USP48-214ENST00000532737 SEC31BQ9NQW1 1179 aa31.3■■■□□ 2.6
USP48-214ENST00000532737 OLFM4Q6UX06 510 aa31.29■■■□□ 2.6
USP48-214ENST00000532737 SUCLG2Q96I99 432 aa31.29■■■□□ 2.6
USP48-214ENST00000532737 CSF1RP07333 972 aa31.28■■■□□ 2.6
USP48-214ENST00000532737 SLC51AQ86UW1 340 aa31.28■■■□□ 2.6
USP48-214ENST00000532737 CELF1Q92879 486 aaKnown RBP31.28■■■□□ 2.6
USP48-214ENST00000532737 KAZALD1Q96I82 304 aa31.28■■■□□ 2.6
USP48-214ENST00000532737 PPEF1O14829 653 aaPredicted RBP31.27■■■□□ 2.6
USP48-214ENST00000532737 BBOX1O75936 387 aa31.27■■■□□ 2.6
USP48-214ENST00000532737 RLBP1P12271 317 aa31.27■■■□□ 2.6
USP48-214ENST00000532737 DZIP1LQ8IYY4 767 aaKnown RBP31.27■■■□□ 2.6
USP48-214ENST00000532737 TMEM57Q8N5G2 664 aa31.27■■■□□ 2.6
USP48-214ENST00000532737 GREM2Q9H772 168 aa31.27■■■□□ 2.6
USP48-214ENST00000532737 PLIN1O60240 522 aa31.25■■■□□ 2.59
USP48-214ENST00000532737 COL4A1P02462 1669 aa31.25■■■□□ 2.59
USP48-214ENST00000532737 CACNA1SQ13698 1873 aa31.25■■■□□ 2.59
USP48-214ENST00000532737 LMBR1LQ6UX01 489 aa31.24■■■□□ 2.59
USP48-214ENST00000532737 FTSJ3Q8IY81 847 aaKnown RBP31.24■■■□□ 2.59
USP48-214ENST00000532737 RTL9Q8NET4 1388 aa31.24■■■□□ 2.59
USP48-214ENST00000532737 KIF3CO14782 793 aa31.23■■■□□ 2.59
USP48-214ENST00000532737 RPS8P62241 208 aaKnown RBP31.23■■■□□ 2.59
USP48-214ENST00000532737 FAM161AQ3B820 660 aa31.23■■■□□ 2.59
USP48-214ENST00000532737 CCDC93Q567U6 631 aa31.23■■■□□ 2.59
USP48-214ENST00000532737 SOGA3Q5TF21 947 aa31.23■■■□□ 2.59
USP48-214ENST00000532737 MEIS3Q99687 375 aa31.23■■■□□ 2.59
USP48-214ENST00000532737 ATP6V0A2Q9Y487 856 aa31.23■■■□□ 2.59
USP48-214ENST00000532737 NFKBIEO00221 500 aa31.22■■■□□ 2.59
USP48-214ENST00000532737 TAF1P21675 1872 aa31.22■■■□□ 2.59
USP48-214ENST00000532737 SP8Q8IXZ3 490 aa31.21■■■□□ 2.59
USP48-214ENST00000532737 PANK1Q8TE04 598 aa31.21■■■□□ 2.59
USP48-214ENST00000532737 UBTFL1P0CB47 393 aaPredicted RBP31.2■■■□□ 2.59
USP48-214ENST00000532737 RASSF7Q02833 373 aa31.2■■■□□ 2.59
USP48-214ENST00000532737 CC2D2BQ6DHV5 1058 aa31.2■■■□□ 2.59
USP48-214ENST00000532737 BICC1Q9H694 974 aaKnown RBP31.2■■■□□ 2.59
USP48-214ENST00000532737 SBF1O95248 1867 aa31.2■■■□□ 2.58
USP48-214ENST00000532737 ITGA6P23229 1130 aa31.19■■■□□ 2.58
USP48-214ENST00000532737 ANKRD44Q8N8A2 993 aa31.19■■■□□ 2.58
USP48-214ENST00000532737 CHMP3Q9Y3E7 222 aa31.19■■■□□ 2.58
USP48-214ENST00000532737 MYH3P11055 1940 aa31.18■■■□□ 2.58
USP48-214ENST00000532737 SNED1Q8TER0 1413 aa31.18■■■□□ 2.58
USP48-214ENST00000532737 HSPA6P17066 643 aa31.18■■■□□ 2.58
USP48-214ENST00000532737 RABL6Q3YEC7 729 aaPredicted RBP31.18■■■□□ 2.58
USP48-214ENST00000532737 TMC4Q7Z404 712 aa31.18■■■□□ 2.58
USP48-214ENST00000532737 ANKRD18AQ8IVF6 992 aa31.18■■■□□ 2.58
USP48-214ENST00000532737 RTKN2Q8IZC4 609 aa31.18■■■□□ 2.58
USP48-214ENST00000532737 CDC5LQ99459 802 aaKnown RBP31.18■■■□□ 2.58
USP48-214ENST00000532737 PRELPP51888 382 aa31.17■■■□□ 2.58
USP48-214ENST00000532737 MS4A1P11836 297 aa31.16■■■□□ 2.58
USP48-214ENST00000532737 ITPRIPQ8IWB1 547 aa31.16■■■□□ 2.58
USP48-214ENST00000532737 ANKRD18BA2A2Z9 1011 aa31.15■■■□□ 2.58
USP48-214ENST00000532737 GNAI3P08754 354 aa31.15■■■□□ 2.58
USP48-214ENST00000532737 GOLGA6L2Q8N9W4 650 aaPredicted RBP31.15■■■□□ 2.58
USP48-214ENST00000532737 TMX4Q9H1E5 349 aaPredicted RBP31.15■■■□□ 2.58
USP48-214ENST00000532737 TAOK3Q9H2K8 898 aa31.15■■■□□ 2.58
USP48-214ENST00000532737 LRRFIP2Q9Y608 721 aaKnown RBP31.15■■■□□ 2.58
USP48-214ENST00000532737 FKBP4Q02790 459 aaKnown RBP eCLIP31.14■■■□□ 2.58
USP48-214ENST00000532737 IFIT5Q13325 482 aaKnown RBP31.14■■■□□ 2.58
USP48-214ENST00000532737 LTBP3Q9NS15 1303 aa31.14■■■□□ 2.58
USP48-214ENST00000532737 C20orf194Q5TEA3 1177 aa31.13■■■□□ 2.57
USP48-214ENST00000532737 CCDC57Q2TAC2 916 aa31.12■■■□□ 2.57
USP48-214ENST00000532737 GRIPAP1Q4V328 841 aa31.12■■■□□ 2.57
USP48-214ENST00000532737 HDAC5Q9UQL6 1122 aa31.12■■■□□ 2.57
USP48-214ENST00000532737 FER1L6Q2WGJ9 1857 aa31.12■■■□□ 2.57
USP48-214ENST00000532737 ZBTB7BO15156 539 aaPredicted RBP31.11■■■□□ 2.57
USP48-214ENST00000532737 IGHMBP2P38935 993 aaKnown RBP31.11■■■□□ 2.57
USP48-214ENST00000532737 C9orf131Q5VYM1 1079 aa31.11■■■□□ 2.57
USP48-214ENST00000532737 MPNDQ8N594 471 aa31.11■■■□□ 2.57
USP48-214ENST00000532737 BSDC1Q9NW68 430 aaPredicted RBP31.11■■■□□ 2.57
USP48-214ENST00000532737 LMNB1P20700 586 aa31.1■■■□□ 2.57
USP48-214ENST00000532737 ZNF594Q96JF6 807 aaPredicted RBP31.1■■■□□ 2.57
USP48-214ENST00000532737 PSMD1Q99460 953 aa31.1■■■□□ 2.57
USP48-214ENST00000532737 GPSM2P81274 684 aa31.09■■■□□ 2.57
USP48-214ENST00000532737 PDE3AQ14432 1141 aa31.09■■■□□ 2.57
USP48-214ENST00000532737 DPP8Q6V1X1 898 aaPredicted RBP31.09■■■□□ 2.57
USP48-214ENST00000532737 ZNF277Q9NRM2 450 aaPredicted RBP31.09■■■□□ 2.57
USP48-214ENST00000532737 COG6Q9Y2V7 657 aa31.09■■■□□ 2.57
USP48-214ENST00000532737 RNF181Q9P0P0 153 aa31.08■■■□□ 2.57
USP48-214ENST00000532737 MINPP1Q9UNW1 487 aa31.08■■■□□ 2.57
USP48-214ENST00000532737 NSFL1CQ9UNZ2 370 aaKnown RBP31.08■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms