RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 THUMPD2Q9BTF0 503 aaKnown RBP9.57□□□□□ -0.88
CD44-228ENST00000528455 PRR14Q9BWN1 585 aa9.57□□□□□ -0.88
CD44-228ENST00000528455 SLC52A2Q9HAB3 445 aa9.57□□□□□ -0.88
CD44-228ENST00000528455 RREB1Q92766 1687 aa9.56□□□□□ -0.88
CD44-228ENST00000528455 ADAMTS7Q9UKP4 1686 aa9.56□□□□□ -0.88
CD44-228ENST00000528455 BTBD11A6QL63 1104 aa9.56□□□□□ -0.88
CD44-228ENST00000528455 HOXA2O43364 376 aa9.56□□□□□ -0.88
CD44-228ENST00000528455 KCNQ2O43526 872 aa9.56□□□□□ -0.88
CD44-228ENST00000528455 CT47B1P0C2W7 299 aaPredicted RBP9.56□□□□□ -0.88
CD44-228ENST00000528455 NYAP1Q6ZVC0 841 aa9.56□□□□□ -0.88
CD44-228ENST00000528455 CHMP4AQ9BY43 222 aa9.56□□□□□ -0.88
CD44-228ENST00000528455 GOPCQ9HD26 462 aa9.56□□□□□ -0.88
CD44-228ENST00000528455 LAS1LQ9Y4W2 734 aaKnown RBP9.56□□□□□ -0.88
CD44-228ENST00000528455 RGPD3A6NKT7 1758 aaPredicted RBP9.55□□□□□ -0.88
CD44-228ENST00000528455 RGPD4Q7Z3J3 1758 aa9.55□□□□□ -0.88
CD44-228ENST00000528455 MOXD2PA6NHM9 499 aa9.55□□□□□ -0.88
CD44-228ENST00000528455 TXNRD1Q16881 649 aa9.55□□□□□ -0.88
CD44-228ENST00000528455 ZNF428Q96B54 188 aa9.55□□□□□ -0.88
CD44-228ENST00000528455 MBIPQ9NS73 344 aa9.55□□□□□ -0.88
CD44-228ENST00000528455 SHANK3Q9BYB0 1731 aa9.55□□□□□ -0.88
CD44-228ENST00000528455 SOS1Q07889 1333 aaPredicted RBP9.55□□□□□ -0.88
CD44-228ENST00000528455 NUP188Q5SRE5 1749 aa9.54□□□□□ -0.88
CD44-228ENST00000528455 NDUFV2P19404 249 aa9.54□□□□□ -0.88
CD44-228ENST00000528455 ATP6V1AP38606 617 aa9.54□□□□□ -0.88
CD44-228ENST00000528455 SKIV2LQ15477 1246 aaKnown RBP9.54□□□□□ -0.88
CD44-228ENST00000528455 HLA-CQ95604 372 aa9.54□□□□□ -0.88
CD44-228ENST00000528455 POLR3EQ9NVU0 708 aa9.54□□□□□ -0.88
CD44-228ENST00000528455 MIS18AQ9NYP9 233 aa9.54□□□□□ -0.88
CD44-228ENST00000528455 TSPYL4Q9UJ04 414 aa9.54□□□□□ -0.88
CD44-228ENST00000528455 LRP5O75197 1615 aa9.53□□□□□ -0.88
CD44-228ENST00000528455 SPTLC1O15269 473 aa9.53□□□□□ -0.88
CD44-228ENST00000528455 PUS10Q3MIT2 529 aaKnown RBP9.53□□□□□ -0.88
CD44-228ENST00000528455 RSBN1LQ6PCB5 846 aaPredicted RBP9.53□□□□□ -0.88
CD44-228ENST00000528455 ZNF790Q6PG37 636 aa9.53□□□□□ -0.88
CD44-228ENST00000528455 SYTL4Q96C24 671 aaPredicted RBP9.53□□□□□ -0.88
CD44-228ENST00000528455 STK32BQ9NY57 414 aa9.53□□□□□ -0.88
CD44-228ENST00000528455 TMOD3Q9NYL9 352 aa9.53□□□□□ -0.88
CD44-228ENST00000528455 HCSTQ9UBK5 93 aa9.53□□□□□ -0.88
CD44-228ENST00000528455 KDM6AO15550 1401 aaPredicted RBP9.53□□□□□ -0.88
CD44-228ENST00000528455 FANCIQ9NVI1 1328 aa9.53□□□□□ -0.88
CD44-228ENST00000528455 SIPA1L3O60292 1781 aaPredicted RBP9.52□□□□□ -0.88
CD44-228ENST00000528455 NHSQ6T4R5 1651 aa9.52□□□□□ -0.89
CD44-228ENST00000528455 ITGB4P16144 1822 aa9.52□□□□□ -0.89
CD44-228ENST00000528455 VAMP4O75379 141 aa9.52□□□□□ -0.89
CD44-228ENST00000528455 EIF4A1P60842 406 aaKnown RBP9.52□□□□□ -0.89
CD44-228ENST00000528455 EXOSC9Q06265 439 aaKnown RBP9.52□□□□□ -0.89
CD44-228ENST00000528455 MORN1Q5T089 497 aa9.52□□□□□ -0.89
CD44-228ENST00000528455 RIC3Q7Z5B4 369 aa9.52□□□□□ -0.89
CD44-228ENST00000528455 PIGBQ92521 554 aa9.52□□□□□ -0.89
CD44-228ENST00000528455 TSR2Q969E8 191 aaKnown RBP9.52□□□□□ -0.89
CD44-228ENST00000528455 SPON1Q9HCB6 807 aa9.52□□□□□ -0.89
CD44-228ENST00000528455 LIMD1Q9UGP4 676 aa9.52□□□□□ -0.89
CD44-228ENST00000528455 PCDHB3Q9Y5E6 796 aa9.52□□□□□ -0.89
CD44-228ENST00000528455 GJA5P36382 358 aa9.51□□□□□ -0.89
CD44-228ENST00000528455 CLK2P49760 499 aaKnown RBP9.51□□□□□ -0.89
CD44-228ENST00000528455 GUCA2AQ02747 115 aa9.51□□□□□ -0.89
CD44-228ENST00000528455 SLC15A2Q16348 729 aa9.51□□□□□ -0.89
CD44-228ENST00000528455 GRIPAP1Q4V328 841 aa9.51□□□□□ -0.89
CD44-228ENST00000528455 C8orf58Q8NAV2 365 aa9.51□□□□□ -0.89
CD44-228ENST00000528455 PROCA1Q8NCQ7 364 aaPredicted RBP9.51□□□□□ -0.89
CD44-228ENST00000528455 TEX13AQ9BXU3 409 aaPredicted RBP9.51□□□□□ -0.89
CD44-228ENST00000528455 HEG1Q9ULI3 1381 aa9.5□□□□□ -0.89
CD44-228ENST00000528455 HOXB7P09629 217 aa9.5□□□□□ -0.89
CD44-228ENST00000528455 TWISTNBQ3B726 338 aaPredicted RBP9.5□□□□□ -0.89
CD44-228ENST00000528455 ALDH1L2Q3SY69 923 aa9.5□□□□□ -0.89
CD44-228ENST00000528455 SLC27A3Q5K4L6 730 aa9.5□□□□□ -0.89
CD44-228ENST00000528455 TTC5Q8N0Z6 440 aa9.5□□□□□ -0.89
CD44-228ENST00000528455 SMARCC1Q92922 1105 aaPredicted RBP9.5□□□□□ -0.89
CD44-228ENST00000528455 ATG3Q9NT62 314 aa9.5□□□□□ -0.89
CD44-228ENST00000528455 RCAN3Q9UKA8 241 aa9.5□□□□□ -0.89
CD44-228ENST00000528455 PCDHGC3Q9UN70 934 aa9.5□□□□□ -0.89
CD44-228ENST00000528455 MRC1P22897 1456 aa9.5□□□□□ -0.89
CD44-228ENST00000528455 BTAF1O14981 1849 aa9.49□□□□□ -0.89
CD44-228ENST00000528455 KCNQ3O43525 872 aa9.49□□□□□ -0.89
CD44-228ENST00000528455 GIGYF1O75420 1035 aaPredicted RBP9.49□□□□□ -0.89
CD44-228ENST00000528455 SNRPA1P09661 255 aaKnown RBP9.49□□□□□ -0.89
CD44-228ENST00000528455 FDX1P10109 184 aa9.49□□□□□ -0.89
CD44-228ENST00000528455 HMGB2P26583 209 aaKnown RBP9.49□□□□□ -0.89
CD44-228ENST00000528455 SLC39A6Q13433 755 aa9.49□□□□□ -0.89
CD44-228ENST00000528455 TUSC1Q2TAM9 212 aa9.49□□□□□ -0.89
CD44-228ENST00000528455 BLOC1S3Q6QNY0 202 aa9.49□□□□□ -0.89
CD44-228ENST00000528455 FMNL2Q96PY5 1086 aa9.49□□□□□ -0.89
CD44-228ENST00000528455 PPP1R1BQ9UD71 204 aaPredicted RBP9.49□□□□□ -0.89
CD44-228ENST00000528455 SLC27A5Q9Y2P5 690 aa9.49□□□□□ -0.89
CD44-228ENST00000528455 PCDHB15Q9Y5E8 787 aa9.49□□□□□ -0.89
CD44-228ENST00000528455 CACNA1FO60840 1977 aa9.49□□□□□ -0.89
CD44-228ENST00000528455 ELL2O00472 640 aaPredicted RBP9.48□□□□□ -0.89
CD44-228ENST00000528455 RARSP54136 660 aaKnown RBP9.48□□□□□ -0.89
CD44-228ENST00000528455 CCDC30Q5VVM6 783 aa9.48□□□□□ -0.89
CD44-228ENST00000528455 TSPYL6Q8N831 410 aa9.48□□□□□ -0.89
CD44-228ENST00000528455 ZNF496Q96IT1 587 aaPredicted RBP9.48□□□□□ -0.89
CD44-228ENST00000528455 PCMTD1Q96MG8 357 aaPredicted RBP9.48□□□□□ -0.89
CD44-228ENST00000528455 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.48□□□□□ -0.89
CD44-228ENST00000528455 ASAP1Q9ULH1 1129 aa9.48□□□□□ -0.89
CD44-228ENST00000528455 KDM3BQ7LBC6 1761 aa9.47□□□□□ -0.89
CD44-228ENST00000528455 TJAP1Q5JTD0 557 aa9.47□□□□□ -0.89
CD44-228ENST00000528455 SCUBE3Q8IX30 993 aa9.47□□□□□ -0.89
CD44-228ENST00000528455 MTRQ99707 1265 aa9.47□□□□□ -0.89
CD44-228ENST00000528455 LRRC4BQ9NT99 713 aa9.47□□□□□ -0.89
CD44-228ENST00000528455 DOT1LQ8TEK3 1739 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms