RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 USP42Q9H9J4 1324 aaKnown RBP11.27□□□□□ -0.61
USP48-212ENST00000527823 ARFGEF2Q9Y6D5 1785 aa11.26□□□□□ -0.61
USP48-212ENST00000527823 RPS6KA4O75676 772 aa11.26□□□□□ -0.61
USP48-212ENST00000527823 RC3H1Q5TC82 1133 aaKnown RBP11.26□□□□□ -0.61
USP48-212ENST00000527823 IFNL2Q8IZJ0 200 aa11.26□□□□□ -0.61
USP48-212ENST00000527823 ANKK1Q8NFD2 765 aa11.26□□□□□ -0.61
USP48-212ENST00000527823 WNT2BQ93097 391 aa11.26□□□□□ -0.61
USP48-212ENST00000527823 LRCH3Q96II8 777 aa11.26□□□□□ -0.61
USP48-212ENST00000527823 UBR2Q8IWV8 1755 aa11.26□□□□□ -0.61
USP48-212ENST00000527823 RFC4P35249 363 aa11.25□□□□□ -0.61
USP48-212ENST00000527823 SULF1Q8IWU6 871 aa11.25□□□□□ -0.61
USP48-212ENST00000527823 RDH13Q8NBN7 331 aa11.25□□□□□ -0.61
USP48-212ENST00000527823 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.25□□□□□ -0.61
USP48-212ENST00000527823 PCDH10Q9P2E7 1040 aa11.25□□□□□ -0.61
USP48-212ENST00000527823 WASHC2AQ641Q2 1341 aa11.25□□□□□ -0.61
USP48-212ENST00000527823 CARMIL3Q8ND23 1372 aa11.25□□□□□ -0.61
USP48-212ENST00000527823 SLC10A3P09131 477 aa11.24□□□□□ -0.61
USP48-212ENST00000527823 BCAMP50895 628 aa11.24□□□□□ -0.61
USP48-212ENST00000527823 SLF2Q8IX21 1173 aa11.24□□□□□ -0.61
USP48-212ENST00000527823 BEGAINQ9BUH8 593 aa11.24□□□□□ -0.61
USP48-212ENST00000527823 MRC1P22897 1456 aa11.24□□□□□ -0.61
USP48-212ENST00000527823 POLRMTO00411 1230 aaKnown RBP11.23□□□□□ -0.61
USP48-212ENST00000527823 PPM1GO15355 546 aaPredicted RBP11.23□□□□□ -0.61
USP48-212ENST00000527823 CD46P15529 392 aa11.23□□□□□ -0.61
USP48-212ENST00000527823 CRKLP46109 303 aaKnown RBP11.23□□□□□ -0.61
USP48-212ENST00000527823 KCTD12Q96CX2 325 aaKnown RBP11.23□□□□□ -0.61
USP48-212ENST00000527823 CARD14Q9BXL6 1004 aa11.23□□□□□ -0.61
USP48-212ENST00000527823 SOWAHBA6NEL2 793 aa11.22□□□□□ -0.61
USP48-212ENST00000527823 SLC4A3P48751 1232 aa11.22□□□□□ -0.61
USP48-212ENST00000527823 THSD7BQ9C0I4 1608 aa11.22□□□□□ -0.61
USP48-212ENST00000527823 ADAMTSL1Q8N6G6 1762 aa11.21□□□□□ -0.61
USP48-212ENST00000527823 GLTPD2A6NH11 291 aa11.21□□□□□ -0.61
USP48-212ENST00000527823 ERVV-2B6SEH9 535 aa11.21□□□□□ -0.61
USP48-212ENST00000527823 NFKBIEO00221 500 aa11.21□□□□□ -0.61
USP48-212ENST00000527823 EIF4A2Q14240 407 aaKnown RBP11.21□□□□□ -0.61
USP48-212ENST00000527823 DDRGK1Q96HY6 314 aa11.21□□□□□ -0.61
USP48-212ENST00000527823 BCORQ6W2J9 1755 aa11.21□□□□□ -0.62
USP48-212ENST00000527823 POTECB2RU33 542 aa11.2□□□□□ -0.62
USP48-212ENST00000527823 VEGFAP15692 232 aaPredicted RBP11.2□□□□□ -0.62
USP48-212ENST00000527823 LMNB1P20700 586 aa11.2□□□□□ -0.62
USP48-212ENST00000527823 SCN4AP35499 1836 aa11.2□□□□□ -0.62
USP48-212ENST00000527823 SOS1Q07889 1333 aaPredicted RBP11.19□□□□□ -0.62
USP48-212ENST00000527823 POLKQ9UBT6 870 aa11.19□□□□□ -0.62
USP48-212ENST00000527823 HPS5Q9UPZ3 1129 aa11.19□□□□□ -0.62
USP48-212ENST00000527823 COL15A1P39059 1388 aa11.18□□□□□ -0.62
USP48-212ENST00000527823 CNTNAP1P78357 1384 aa11.18□□□□□ -0.62
USP48-212ENST00000527823 FOXN1O15353 648 aa11.18□□□□□ -0.62
USP48-212ENST00000527823 PTCD1O75127 700 aaKnown RBP11.18□□□□□ -0.62
USP48-212ENST00000527823 TM4SF1P30408 202 aa11.18□□□□□ -0.62
USP48-212ENST00000527823 ZNF530Q6P9A1 599 aaPredicted RBP11.18□□□□□ -0.62
USP48-212ENST00000527823 INTS5Q6P9B9 1019 aaKnown RBP11.18□□□□□ -0.62
USP48-212ENST00000527823 MKRN1Q9UHC7 482 aaKnown RBP11.18□□□□□ -0.62
USP48-212ENST00000527823 SLX4Q8IY92 1834 aa11.18□□□□□ -0.62
USP48-212ENST00000527823 HSP90AB1P08238 724 aaKnown RBP11.17□□□□□ -0.62
USP48-212ENST00000527823 PPP4CP60510 307 aa11.17□□□□□ -0.62
USP48-212ENST00000527823 NFIXQ14938 502 aa11.17□□□□□ -0.62
USP48-212ENST00000527823 USPL1Q5W0Q7 1092 aa11.17□□□□□ -0.62
USP48-212ENST00000527823 THSD4Q6ZMP0 1018 aa11.17□□□□□ -0.62
USP48-212ENST00000527823 SPNS2Q8IVW8 549 aa11.17□□□□□ -0.62
USP48-212ENST00000527823 SIPA1L3O60292 1781 aaPredicted RBP11.16□□□□□ -0.62
USP48-212ENST00000527823 CFHP08603 1231 aa11.16□□□□□ -0.62
USP48-212ENST00000527823 GCGRP47871 477 aa11.16□□□□□ -0.62
USP48-212ENST00000527823 CABP4P57796 275 aa11.16□□□□□ -0.62
USP48-212ENST00000527823 TSR3Q9UJK0 312 aaKnown RBP11.16□□□□□ -0.62
USP48-212ENST00000527823 TMEM132AQ24JP5 1023 aa11.15□□□□□ -0.62
USP48-212ENST00000527823 AEBP1Q8IUX7 1158 aa11.15□□□□□ -0.62
USP48-212ENST00000527823 WBP1LQ9NX94 342 aa11.15□□□□□ -0.62
USP48-212ENST00000527823 NUTM1Q86Y26 1132 aa11.14□□□□□ -0.63
USP48-212ENST00000527823 DNAJC10Q8IXB1 793 aa11.14□□□□□ -0.63
USP48-212ENST00000527823 TTLL6Q8N841 843 aa11.14□□□□□ -0.63
USP48-212ENST00000527823 SPIRE2Q8WWL2 714 aa11.14□□□□□ -0.63
USP48-212ENST00000527823 TBC1D2Q9BYX2 928 aa11.14□□□□□ -0.63
USP48-212ENST00000527823 PRDM10Q9NQV6 1147 aa11.14□□□□□ -0.63
USP48-212ENST00000527823 ZBTB1Q9Y2K1 713 aa11.14□□□□□ -0.63
USP48-212ENST00000527823 LTBP1Q14766 1721 aa11.14□□□□□ -0.63
USP48-212ENST00000527823 PASKQ96RG2 1323 aa11.13□□□□□ -0.63
USP48-212ENST00000527823 PTPN5P54829 565 aa11.13□□□□□ -0.63
USP48-212ENST00000527823 PLEKHO1Q53GL0 409 aaPredicted RBP11.13□□□□□ -0.63
USP48-212ENST00000527823 CDCA8Q53HL2 280 aa11.13□□□□□ -0.63
USP48-212ENST00000527823 C2CD5Q86YS7 1000 aa11.13□□□□□ -0.63
USP48-212ENST00000527823 NFATC2IPQ8NCF5 419 aa11.13□□□□□ -0.63
USP48-212ENST00000527823 NARFQ9UHQ1 456 aa11.13□□□□□ -0.63
USP48-212ENST00000527823 KDM4AO75164 1064 aa11.12□□□□□ -0.63
USP48-212ENST00000527823 ZPR1O75312 459 aa11.12□□□□□ -0.63
USP48-212ENST00000527823 SERPINB2P05120 415 aa11.12□□□□□ -0.63
USP48-212ENST00000527823 TNNT2P45379 298 aaPredicted RBP11.12□□□□□ -0.63
USP48-212ENST00000527823 MTHFSP49914 203 aa11.12□□□□□ -0.63
USP48-212ENST00000527823 AMOTQ4VCS5 1084 aa11.12□□□□□ -0.63
USP48-212ENST00000527823 LTBP3Q9NS15 1303 aa11.11□□□□□ -0.63
USP48-212ENST00000527823 TNRC18O15417 2968 aaPredicted RBP11.11□□□□□ -0.63
USP48-212ENST00000527823 CYP19A1P11511 503 aaPredicted RBP11.11□□□□□ -0.63
USP48-212ENST00000527823 C1orf141Q5JVX7 400 aa11.11□□□□□ -0.63
USP48-212ENST00000527823 NECTIN2Q92692 538 aa11.11□□□□□ -0.63
USP48-212ENST00000527823 CTCFP49711 727 aaPredicted RBP11.1□□□□□ -0.63
USP48-212ENST00000527823 KMT5BQ4FZB7 885 aa11.1□□□□□ -0.63
USP48-212ENST00000527823 ERFEQ4G0M1 354 aa11.1□□□□□ -0.63
USP48-212ENST00000527823 MYSM1Q5VVJ2 828 aa11.1□□□□□ -0.63
USP48-212ENST00000527823 TRPM7Q96QT4 1865 aa11.09□□□□□ -0.63
USP48-212ENST00000527823 C21orf2O43822 256 aa11.09□□□□□ -0.63
USP48-212ENST00000527823 DDNO94850 711 aaPredicted RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms