RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 PLA2G12BQ9BX93 195 aa17.2■□□□□ 0.34
CD44-224ENST00000526669 CHRNA5P30532 468 aa17.19■□□□□ 0.34
CD44-224ENST00000526669 LMBR1LQ6UX01 489 aa17.19■□□□□ 0.34
CD44-224ENST00000526669 C2CD5Q86YS7 1000 aa17.19■□□□□ 0.34
CD44-224ENST00000526669 ZBTB40Q9NUA8 1239 aa17.19■□□□□ 0.34
CD44-224ENST00000526669 ARFGEF1Q9Y6D6 1849 aa17.19■□□□□ 0.34
CD44-224ENST00000526669 PDE6BP35913 854 aa17.18■□□□□ 0.34
CD44-224ENST00000526669 FAM161AQ3B820 660 aa17.18■□□□□ 0.34
CD44-224ENST00000526669 TTLL11Q8NHH1 800 aa17.18■□□□□ 0.34
CD44-224ENST00000526669 WWC3Q9ULE0 1092 aa17.18■□□□□ 0.34
CD44-224ENST00000526669 CCDC88AQ3V6T2 1871 aa17.18■□□□□ 0.34
CD44-224ENST00000526669 HSP90B1P14625 803 aaKnown RBP17.17■□□□□ 0.34
CD44-224ENST00000526669 RPGRQ92834 1020 aaKnown RBP17.17■□□□□ 0.34
CD44-224ENST00000526669 FHDC1Q9C0D6 1143 aaPredicted RBP17.17■□□□□ 0.34
CD44-224ENST00000526669 CHMP4BQ9H444 224 aaKnown RBP17.17■□□□□ 0.34
CD44-224ENST00000526669 GREM2Q9H772 168 aa17.17■□□□□ 0.34
CD44-224ENST00000526669 A0A0G2JLW4 131 aa17.16■□□□□ 0.34
CD44-224ENST00000526669 DPEP1P16444 411 aa17.16■□□□□ 0.34
CD44-224ENST00000526669 SF3B3Q15393 1217 aaKnown RBP17.16■□□□□ 0.34
CD44-224ENST00000526669 CCDC152Q4G0S7 254 aa17.16■□□□□ 0.34
CD44-224ENST00000526669 NLGN2Q8NFZ4 835 aa17.16■□□□□ 0.34
CD44-224ENST00000526669 ZNF622Q969S3 477 aaKnown RBP eCLIP17.16■□□□□ 0.34
CD44-224ENST00000526669 SEC31BQ9NQW1 1179 aa17.16■□□□□ 0.34
CD44-224ENST00000526669 H0YIN7 160 aa17.15■□□□□ 0.34
CD44-224ENST00000526669 CSF1RP07333 972 aa17.15■□□□□ 0.34
CD44-224ENST00000526669 RABL6Q3YEC7 729 aaPredicted RBP17.15■□□□□ 0.34
CD44-224ENST00000526669 HDAC5Q9UQL6 1122 aa17.15■□□□□ 0.34
CD44-224ENST00000526669 CD2APQ9Y5K6 639 aa17.15■□□□□ 0.34
CD44-224ENST00000526669 LRRC37AA6NMS7 1700 aa17.15■□□□□ 0.34
CD44-224ENST00000526669 PNMA6EA0A0J9YXQ4 647 aa17.14■□□□□ 0.33
CD44-224ENST00000526669 KLRG2A4D1S0 409 aaPredicted RBP17.14■□□□□ 0.33
CD44-224ENST00000526669 SRGNP10124 158 aa17.14■□□□□ 0.33
CD44-224ENST00000526669 ITGA6P23229 1130 aa17.14■□□□□ 0.33
CD44-224ENST00000526669 CRY2Q49AN0 593 aa17.14■□□□□ 0.33
CD44-224ENST00000526669 CEP85Q6P2H3 762 aa17.14■□□□□ 0.33
CD44-224ENST00000526669 DDX46Q7L014 1031 aaKnown RBP17.14■□□□□ 0.33
CD44-224ENST00000526669 ZNF594Q96JF6 807 aaPredicted RBP17.14■□□□□ 0.33
CD44-224ENST00000526669 NPR1P16066 1061 aa17.13■□□□□ 0.33
CD44-224ENST00000526669 KLHDC4Q8TBB5 520 aa17.13■□□□□ 0.33
CD44-224ENST00000526669 MASTLQ96GX5 879 aa17.13■□□□□ 0.33
CD44-224ENST00000526669 RBM17Q96I25 401 aaKnown RBP17.13■□□□□ 0.33
CD44-224ENST00000526669 PCDHB15Q9Y5E8 787 aa17.13■□□□□ 0.33
CD44-224ENST00000526669 SRGAP3O43295 1099 aa17.12■□□□□ 0.33
CD44-224ENST00000526669 TGFB2P61812 414 aa17.12■□□□□ 0.33
CD44-224ENST00000526669 ATP8B2P98198 1209 aa17.12■□□□□ 0.33
CD44-224ENST00000526669 TAF7LQ5H9L4 462 aa17.12■□□□□ 0.33
CD44-224ENST00000526669 SLC51AQ86UW1 340 aa17.12■□□□□ 0.33
CD44-224ENST00000526669 CELF1Q92879 486 aaKnown RBP17.12■□□□□ 0.33
CD44-224ENST00000526669 ZNF219Q9P2Y4 722 aaPredicted RBP17.12■□□□□ 0.33
CD44-224ENST00000526669 PA2G4Q9UQ80 394 aaKnown RBP17.12■□□□□ 0.33
CD44-224ENST00000526669 RTL9Q8NET4 1388 aa17.12■□□□□ 0.33
CD44-224ENST00000526669 ANKRD18BA2A2Z9 1011 aa17.11■□□□□ 0.33
CD44-224ENST00000526669 KCNA3P22001 575 aa17.11■□□□□ 0.33
CD44-224ENST00000526669 IFIT5Q13325 482 aaKnown RBP17.11■□□□□ 0.33
CD44-224ENST00000526669 CCDC57Q2TAC2 916 aa17.11■□□□□ 0.33
CD44-224ENST00000526669 FER1L6Q2WGJ9 1857 aa17.1■□□□□ 0.33
CD44-224ENST00000526669 RFX5P48382 616 aaPredicted RBP17.1■□□□□ 0.33
CD44-224ENST00000526669 GRAPQ13588 217 aa17.1■□□□□ 0.33
CD44-224ENST00000526669 STYK1Q6J9G0 422 aa17.1■□□□□ 0.33
CD44-224ENST00000526669 SIRT2Q8IXJ6 389 aa17.1■□□□□ 0.33
CD44-224ENST00000526669 GRAPLQ8TC17 118 aaPredicted RBP17.1■□□□□ 0.33
CD44-224ENST00000526669 SYT17Q9BSW7 474 aa17.1■□□□□ 0.33
CD44-224ENST00000526669 PDZRN3Q9UPQ7 1066 aa17.1■□□□□ 0.33
CD44-224ENST00000526669 HOXA10P31260 410 aaPredicted RBP17.09■□□□□ 0.33
CD44-224ENST00000526669 MTX1Q13505 466 aa17.09■□□□□ 0.33
CD44-224ENST00000526669 ANKRD18AQ8IVF6 992 aa17.09■□□□□ 0.33
CD44-224ENST00000526669 CRAMP1Q96RY5 1269 aa17.09■□□□□ 0.33
CD44-224ENST00000526669 CDC5LQ99459 802 aaKnown RBP17.09■□□□□ 0.33
CD44-224ENST00000526669 SIL1Q9H173 461 aa17.09■□□□□ 0.33
CD44-224ENST00000526669 CHD4Q14839 1912 aa17.08■□□□□ 0.33
CD44-224ENST00000526669 MYH13Q9UKX3 1938 aa17.08■□□□□ 0.33
CD44-224ENST00000526669 IGHMBP2P38935 993 aaKnown RBP17.08■□□□□ 0.32
CD44-224ENST00000526669 POLA2Q14181 598 aa17.08■□□□□ 0.32
CD44-224ENST00000526669 RPAP2Q8IXW5 612 aaPredicted RBP17.08■□□□□ 0.32
CD44-224ENST00000526669 CNKSR1Q969H4 720 aa17.08■□□□□ 0.32
CD44-224ENST00000526669 PUS3Q9BZE2 481 aaKnown RBP17.08■□□□□ 0.32
CD44-224ENST00000526669 LTBP1Q14766 1721 aa17.07■□□□□ 0.32
CD44-224ENST00000526669 PPEF1O14829 653 aaPredicted RBP17.07■□□□□ 0.32
CD44-224ENST00000526669 ALDH1B1P30837 517 aa17.07■□□□□ 0.32
CD44-224ENST00000526669 RPS8P62241 208 aaKnown RBP17.07■□□□□ 0.32
CD44-224ENST00000526669 PTPN12Q05209 780 aaKnown RBP17.07■□□□□ 0.32
CD44-224ENST00000526669 PRPF40BQ6NWY9 871 aaKnown RBP17.07■□□□□ 0.32
CD44-224ENST00000526669 OLFM4Q6UX06 510 aa17.07■□□□□ 0.32
CD44-224ENST00000526669 TTLL6Q8N841 843 aa17.07■□□□□ 0.32
CD44-224ENST00000526669 SSH3Q8TE77 659 aa17.07■□□□□ 0.32
CD44-224ENST00000526669 PIM2Q9P1W9 311 aa17.07■□□□□ 0.32
CD44-224ENST00000526669 SBF1O95248 1867 aa17.07■□□□□ 0.32
CD44-224ENST00000526669 SRCAPQ6ZRS2 3230 aa17.06■□□□□ 0.32
CD44-224ENST00000526669 AAMPQ13685 434 aa17.06■□□□□ 0.32
CD44-224ENST00000526669 LRRC24Q50LG9 513 aa17.06■□□□□ 0.32
CD44-224ENST00000526669 PELP1Q8IZL8 1130 aaKnown RBP17.06■□□□□ 0.32
CD44-224ENST00000526669 MPHOSPH8Q99549 860 aa17.06■□□□□ 0.32
CD44-224ENST00000526669 CNNM1Q9NRU3 951 aa17.06■□□□□ 0.32
CD44-224ENST00000526669 BCS1LQ9Y276 419 aa17.06■□□□□ 0.32
CD44-224ENST00000526669 HMMRO75330 724 aa17.05■□□□□ 0.32
CD44-224ENST00000526669 LDHAL6AQ6ZMR3 332 aa17.05■□□□□ 0.32
CD44-224ENST00000526669 EXOC6BQ9Y2D4 811 aa17.05■□□□□ 0.32
CD44-224ENST00000526669 ARAP2Q8WZ64 1704 aa17.04■□□□□ 0.32
CD44-224ENST00000526669 APBB1O00213 710 aa17.04■□□□□ 0.32
CD44-224ENST00000526669 DALRD3Q5D0E6 543 aaKnown RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms