RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, human

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MCF2-208	ENST00000519895	NUBP1	P53384	320 aa		3.79	□□□□□ -1.8
MCF2-208	ENST00000519895	SAFB2	Q14151	953 aa	Known RBP eCLIP	3.79	□□□□□ -1.8
MCF2-208	ENST00000519895	USP50	Q70EL3	339 aa	Predicted RBP	3.79	□□□□□ -1.8
MCF2-208	ENST00000519895	GAS2L2	Q8NHY3	880 aa		3.79	□□□□□ -1.8
MCF2-208	ENST00000519895	TMC1	Q8TDI8	760 aa		3.79	□□□□□ -1.8
MCF2-208	ENST00000519895	PNISR	Q8TF01	805 aa	Known RBP	3.79	□□□□□ -1.8
MCF2-208	ENST00000519895	PGAP2	Q9UHJ9	254 aa		3.79	□□□□□ -1.8
MCF2-208	ENST00000519895	MUC6	Q6W4X9	2439 aa		3.79	□□□□□ -1.8
MCF2-208	ENST00000519895	RIC1	Q4ADV7	1423 aa		3.79	□□□□□ -1.8
MCF2-208	ENST00000519895	KAT6B	Q8WYB5	2073 aa		3.79	□□□□□ -1.8
MCF2-208	ENST00000519895	TAT	P17735	454 aa	Predicted RBP	3.79	□□□□□ -1.8
MCF2-208	ENST00000519895	KIF23	Q02241	960 aa	Predicted RBP	3.79	□□□□□ -1.8
MCF2-208	ENST00000519895	PLEKHO1	Q53GL0	409 aa	Predicted RBP	3.79	□□□□□ -1.8
MCF2-208	ENST00000519895	RC3H1	Q5TC82	1133 aa	Known RBP	3.79	□□□□□ -1.8
MCF2-208	ENST00000519895	SHISA4	Q96DD7	197 aa		3.79	□□□□□ -1.8
MCF2-208	ENST00000519895	SLC10A3	P09131	477 aa		3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	PPP2R1A	P30153	589 aa		3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	LMOD3	Q0VAK6	560 aa		3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	RGMB	Q6NW40	437 aa		3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	NLGN1	Q8N2Q7	840 aa		3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	HNRNPAB	Q99729	332 aa	Known RBP	3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	SEMA6B	Q9H3T3	888 aa		3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	CXXC1	Q9P0U4	656 aa	Predicted RBP	3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	HEG1	Q9ULI3	1381 aa		3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	ATRX	P46100	2492 aa		3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	CHD8	Q9HCK8	2581 aa		3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	MED19	A0JLT2	244 aa	Predicted RBP	3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	HOXB7	P09629	217 aa		3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	FOSL2	P15408	326 aa		3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	AMPH	P49418	695 aa		3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	RASSF7	Q02833	373 aa		3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	EIF4A2	Q14240	407 aa	Known RBP	3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	DIAPH1	O60610	1272 aa	Known RBP	3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	LMOD2	Q6P5Q4	547 aa		3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	ALPK3	Q96L96	1907 aa		3.78	□□□□□ -1.8
MCF2-208	ENST00000519895	CALD1	Q05682	793 aa	Known RBP	3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	IFNL2	Q8IZJ0	200 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	ZCRB1	Q8TBF4	217 aa	Known RBP	3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	TEX13A	Q9BXU3	409 aa	Predicted RBP	3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	ANKFY1	Q9P2R3	1169 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	AXIN2	Q9Y2T1	843 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	COL6A3	P12111	3177 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	BMP1	P13497	986 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	CSRNP1	Q96S65	589 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	ARID3A	Q99856	593 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	C1orf115	Q9H7X2	142 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	LRRC37A2	A6NM11	1700 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	DLG5	Q8TDM6	1919 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	NFKBIE	O00221	500 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	ARHGEF6	Q15052	776 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	RAPGEF4	Q8WZA2	1011 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	ERO1A	Q96HE7	468 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	PLEKHF1	Q96S99	279 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	EYA1	Q99502	592 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	RSPH6A	Q9H0K4	717 aa		3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	PRKRIP1	Q9H875	184 aa	Predicted RBP	3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	CCNL1	Q9UK58	526 aa	Predicted RBP	3.77	□□□□□ -1.81
MCF2-208	ENST00000519895	SMAD3	P84022	425 aa	Known RBP	3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	NEUROD2	Q15784	382 aa		3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	MAP1S	Q66K74	1059 aa	Predicted RBP	3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	TOM1L2	Q6ZVM7	507 aa		3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	OTOP1	Q7RTM1	612 aa		3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	TSPYL2	Q9H2G4	693 aa	Predicted RBP	3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	GGNBP2	Q9H3C7	697 aa		3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	STAP2	Q9UGK3	403 aa		3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	DDN	O94850	711 aa	Predicted RBP	3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	CT47B1	P0C2W7	299 aa	Predicted RBP	3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	PHKG2	P15735	406 aa		3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	TM4SF4	P48230	202 aa		3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	PUM1	Q14671	1186 aa	Known RBP eCLIP	3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	ERFE	Q4G0M1	354 aa		3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	SOGA3	Q5TF21	947 aa		3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	DGLUCY	Q7Z3D6	616 aa		3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	ZNF428	Q96B54	188 aa		3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	USP35	Q9P2H5	1018 aa		3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	RNF123	Q5XPI4	1314 aa		3.76	□□□□□ -1.81
MCF2-208	ENST00000519895	ATMIN	O43313	823 aa	Predicted RBP	3.75	□□□□□ -1.81
MCF2-208	ENST00000519895	NBPF6	Q5VWK0	638 aa		3.75	□□□□□ -1.81
MCF2-208	ENST00000519895	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	3.75	□□□□□ -1.81
MCF2-208	ENST00000519895	ZC3H15	Q8WU90	426 aa	Known RBP	3.75	□□□□□ -1.81
MCF2-208	ENST00000519895	NBPF4	Q96M43	638 aa		3.75	□□□□□ -1.81
MCF2-208	ENST00000519895	COL4A4	P53420	1690 aa	Predicted RBP	3.75	□□□□□ -1.81
MCF2-208	ENST00000519895	GTPBP6	O43824	516 aa	Predicted RBP	3.75	□□□□□ -1.81
MCF2-208	ENST00000519895	ALDH1A1	P00352	501 aa		3.75	□□□□□ -1.81
MCF2-208	ENST00000519895	MTHFS	P49914	203 aa		3.75	□□□□□ -1.81
MCF2-208	ENST00000519895	MFSD14A	Q96MC6	490 aa		3.75	□□□□□ -1.81
MCF2-208	ENST00000519895	ZMYND15	Q9H091	742 aa		3.75	□□□□□ -1.81
MCF2-208	ENST00000519895	MMP10	P09238	476 aa		3.75	□□□□□ -1.81
MCF2-208	ENST00000519895	HOXB3	P14651	431 aa	Predicted RBP	3.75	□□□□□ -1.81
MCF2-208	ENST00000519895	ZC3H6	P61129	1189 aa	Known RBP	3.75	□□□□□ -1.81
MCF2-208	ENST00000519895	EAPP	Q56P03	285 aa	Predicted RBP	3.75	□□□□□ -1.81
MCF2-208	ENST00000519895	ASH1L	Q9NR48	2969 aa	Known RBP	3.75	□□□□□ -1.81
MCF2-208	ENST00000519895	NUTM2F	A1L443	756 aa		3.74	□□□□□ -1.81
MCF2-208	ENST00000519895	GALR2	O43603	387 aa	Predicted RBP	3.74	□□□□□ -1.81
MCF2-208	ENST00000519895	ALAD	P13716	330 aa		3.74	□□□□□ -1.81
MCF2-208	ENST00000519895	CCR10	P46092	362 aa		3.74	□□□□□ -1.81
MCF2-208	ENST00000519895	PRMT2	P55345	433 aa		3.74	□□□□□ -1.81
MCF2-208	ENST00000519895	HSP90AB2P	Q58FF8	381 aa		3.74	□□□□□ -1.81
MCF2-208	ENST00000519895	WDR63	Q8IWG1	891 aa		3.74	□□□□□ -1.81

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