RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 GIPC1O14908 333 aa11.56□□□□□ -0.56
NUP54-215ENST00000514313 NLRP8Q86W28 1048 aa11.56□□□□□ -0.56
NUP54-215ENST00000514313 PGBD3Q8N328 593 aa11.56□□□□□ -0.56
NUP54-215ENST00000514313 CCSER2Q9H7U1 834 aa11.56□□□□□ -0.56
NUP54-215ENST00000514313 SF3A1Q15459 793 aaKnown RBP11.55□□□□□ -0.56
NUP54-215ENST00000514313 NLRP13Q86W25 1043 aa11.55□□□□□ -0.56
NUP54-215ENST00000514313 GALNT12Q8IXK2 581 aa11.55□□□□□ -0.56
NUP54-215ENST00000514313 USP17L7P0C7H9 530 aa11.54□□□□□ -0.56
NUP54-215ENST00000514313 SMCPP49901 116 aaPredicted RBP11.54□□□□□ -0.56
NUP54-215ENST00000514313 MEI1Q5TIA1 1274 aa11.54□□□□□ -0.56
NUP54-215ENST00000514313 ACBD3Q9H3P7 528 aa11.54□□□□□ -0.56
NUP54-215ENST00000514313 FAM8A1Q9UBU6 413 aa11.54□□□□□ -0.56
NUP54-215ENST00000514313 SENP3-EIF4A1A0A087X0R7 540 aa11.53□□□□□ -0.56
NUP54-215ENST00000514313 CTC1Q2NKJ3 1217 aa11.53□□□□□ -0.56
NUP54-215ENST00000514313 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.53□□□□□ -0.56
NUP54-215ENST00000514313 GADD45BO75293 160 aaPredicted RBP11.52□□□□□ -0.57
NUP54-215ENST00000514313 THBS1P07996 1170 aa11.52□□□□□ -0.57
NUP54-215ENST00000514313 VEGFBP49765 207 aa11.52□□□□□ -0.57
NUP54-215ENST00000514313 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.52□□□□□ -0.57
NUP54-215ENST00000514313 ZNF394Q53GI3 561 aa11.52□□□□□ -0.57
NUP54-215ENST00000514313 EFHC2Q5JST6 749 aa11.52□□□□□ -0.57
NUP54-215ENST00000514313 NXPE4Q6UWF7 544 aa11.52□□□□□ -0.57
NUP54-215ENST00000514313 BCO2Q9BYV7 579 aa11.52□□□□□ -0.57
NUP54-215ENST00000514313 C11orf16Q9NQ32 467 aa11.52□□□□□ -0.57
NUP54-215ENST00000514313 PPP1R1BQ9UD71 204 aaPredicted RBP11.52□□□□□ -0.57
NUP54-215ENST00000514313 PCDHGB7Q9Y5F8 929 aa11.52□□□□□ -0.57
NUP54-215ENST00000514313 CYP2E1P05181 493 aaPredicted RBP11.51□□□□□ -0.57
NUP54-215ENST00000514313 CAPN10Q9HC96 672 aa11.51□□□□□ -0.57
NUP54-215ENST00000514313 KANSL3Q9P2N6 904 aa11.51□□□□□ -0.57
NUP54-215ENST00000514313 KCNH4Q9UQ05 1017 aa11.51□□□□□ -0.57
NUP54-215ENST00000514313 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.51□□□□□ -0.57
NUP54-215ENST00000514313 USP31Q70CQ4 1352 aa11.51□□□□□ -0.57
NUP54-215ENST00000514313 FAM157BP0CG42 384 aa11.5□□□□□ -0.57
NUP54-215ENST00000514313 CES1P23141 567 aa11.5□□□□□ -0.57
NUP54-215ENST00000514313 TNNI2P48788 182 aa11.5□□□□□ -0.57
NUP54-215ENST00000514313 KCNQ4P56696 695 aa11.5□□□□□ -0.57
NUP54-215ENST00000514313 PTPN12Q05209 780 aaKnown RBP11.5□□□□□ -0.57
NUP54-215ENST00000514313 SFSWAPQ12872 951 aaKnown RBP11.5□□□□□ -0.57
NUP54-215ENST00000514313 TTC39BQ5VTQ0 682 aaPredicted RBP11.5□□□□□ -0.57
NUP54-215ENST00000514313 KRT25Q7Z3Z0 450 aa11.5□□□□□ -0.57
NUP54-215ENST00000514313 UBXN4Q92575 508 aa11.5□□□□□ -0.57
NUP54-215ENST00000514313 SRCIN1Q9C0H9 1055 aa11.5□□□□□ -0.57
NUP54-215ENST00000514313 SUV39H2Q9H5I1 410 aa11.5□□□□□ -0.57
NUP54-215ENST00000514313 DCDC2BA2VCK2 349 aa11.49□□□□□ -0.57
NUP54-215ENST00000514313 AXIN1O15169 862 aa11.49□□□□□ -0.57
NUP54-215ENST00000514313 EFSO43281 561 aa11.49□□□□□ -0.57
NUP54-215ENST00000514313 SASH3O75995 380 aa11.49□□□□□ -0.57
NUP54-215ENST00000514313 GRM2Q14416 872 aa11.49□□□□□ -0.57
NUP54-215ENST00000514313 HS2ST1Q7LGA3 356 aa11.49□□□□□ -0.57
NUP54-215ENST00000514313 LATS2Q9NRM7 1088 aa11.49□□□□□ -0.57
NUP54-215ENST00000514313 DDX41Q9UJV9 622 aaKnown RBP11.49□□□□□ -0.57
NUP54-215ENST00000514313 ATXN7O15265 892 aaPredicted RBP11.48□□□□□ -0.57
NUP54-215ENST00000514313 RACK1P63244 317 aaKnown RBP11.48□□□□□ -0.57
NUP54-215ENST00000514313 LBRQ14739 615 aaKnown RBP11.48□□□□□ -0.57
NUP54-215ENST00000514313 TAF1CQ15572 869 aaPredicted RBP11.48□□□□□ -0.57
NUP54-215ENST00000514313 USP48Q86UV5 1035 aa11.48□□□□□ -0.57
NUP54-215ENST00000514313 PMEPA1Q969W9 287 aa11.48□□□□□ -0.57
NUP54-215ENST00000514313 MAN1A2O60476 641 aa11.47□□□□□ -0.57
NUP54-215ENST00000514313 TARSP26639 723 aaKnown RBP11.47□□□□□ -0.57
NUP54-215ENST00000514313 ST13P50502 369 aaKnown RBP11.47□□□□□ -0.57
NUP54-215ENST00000514313 PKDCCQ504Y2 493 aa11.47□□□□□ -0.57
NUP54-215ENST00000514313 FIGNL1Q6PIW4 674 aa11.47□□□□□ -0.57
NUP54-215ENST00000514313 RIPOR1Q6ZS17 1223 aa11.47□□□□□ -0.57
NUP54-215ENST00000514313 CRIPAKQ8N1N5 446 aa11.47□□□□□ -0.57
NUP54-215ENST00000514313 GGT7Q9UJ14 662 aa11.47□□□□□ -0.57
NUP54-215ENST00000514313 SOBPA7XYQ1 873 aa11.46□□□□□ -0.57
NUP54-215ENST00000514313 KHNYNO15037 678 aaKnown RBP11.46□□□□□ -0.57
NUP54-215ENST00000514313 MMP20O60882 483 aa11.46□□□□□ -0.57
NUP54-215ENST00000514313 DGAT1O75907 488 aa11.46□□□□□ -0.57
NUP54-215ENST00000514313 RGS20O76081 388 aa11.46□□□□□ -0.57
NUP54-215ENST00000514313 CCINQ13939 588 aa11.46□□□□□ -0.57
NUP54-215ENST00000514313 UBAP2LQ14157 1087 aaKnown RBP11.46□□□□□ -0.57
NUP54-215ENST00000514313 PEAR1Q5VY43 1037 aaPredicted RBP11.46□□□□□ -0.57
NUP54-215ENST00000514313 SLC43A3Q8NBI5 491 aa11.46□□□□□ -0.57
NUP54-215ENST00000514313 GLIS3Q8NEA6 775 aa11.46□□□□□ -0.57
NUP54-215ENST00000514313 GSX2Q9BZM3 304 aa11.46□□□□□ -0.57
NUP54-215ENST00000514313 TANGO6Q9C0B7 1094 aa11.46□□□□□ -0.57
NUP54-215ENST00000514313 A0A1W2PP55 124 aa11.45□□□□□ -0.58
NUP54-215ENST00000514313 GRIN2CQ14957 1233 aa11.45□□□□□ -0.58
NUP54-215ENST00000514313 KIAA0319Q5VV43 1072 aa11.45□□□□□ -0.58
NUP54-215ENST00000514313 ZNF654Q8IZM8 581 aa11.45□□□□□ -0.58
NUP54-215ENST00000514313 OR13H1Q8NG92 308 aa11.45□□□□□ -0.58
NUP54-215ENST00000514313 EHD4Q9H223 541 aa11.45□□□□□ -0.58
NUP54-215ENST00000514313 SRA1Q9HD15 236 aaKnown RBP11.45□□□□□ -0.58
NUP54-215ENST00000514313 STRN4Q9NRL3 753 aa11.45□□□□□ -0.58
NUP54-215ENST00000514313 ZFATQ9P243 1243 aa11.45□□□□□ -0.58
NUP54-215ENST00000514313 PCDHGC4Q9Y5F7 938 aa11.45□□□□□ -0.58
NUP54-215ENST00000514313 PHF20L1A8MW92 1017 aa11.44□□□□□ -0.58
NUP54-215ENST00000514313 RARAP10276 462 aa11.44□□□□□ -0.58
NUP54-215ENST00000514313 NUCKS1Q9H1E3 243 aaKnown RBP11.44□□□□□ -0.58
NUP54-215ENST00000514313 HCN2Q9UL51 889 aa11.44□□□□□ -0.58
NUP54-215ENST00000514313 EDN3P14138 238 aa11.43□□□□□ -0.58
NUP54-215ENST00000514313 GSTT1P30711 240 aa11.43□□□□□ -0.58
NUP54-215ENST00000514313 PTSQ03393 145 aa11.43□□□□□ -0.58
NUP54-215ENST00000514313 TNP2Q05952 138 aa11.43□□□□□ -0.58
NUP54-215ENST00000514313 C3orf58Q8NDZ4 430 aa11.43□□□□□ -0.58
NUP54-215ENST00000514313 ATP13A2Q9NQ11 1180 aa11.43□□□□□ -0.58
NUP54-215ENST00000514313 PRKAG2Q9UGJ0 569 aa11.43□□□□□ -0.58
NUP54-215ENST00000514313 POTECB2RU33 542 aa11.42□□□□□ -0.58
NUP54-215ENST00000514313 MAPTP10636 758 aaKnown RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms