RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 GPR108Q9NPR9 543 aa19.62■□□□□ 0.73
NUP54-214ENST00000514307 TFCP2L1Q9NZI6 479 aa19.62■□□□□ 0.73
NUP54-214ENST00000514307 CEP126Q9P2H0 1117 aa19.62■□□□□ 0.73
NUP54-214ENST00000514307 SRP68Q9UHB9 627 aaKnown RBP19.62■□□□□ 0.73
NUP54-214ENST00000514307 NUP188Q5SRE5 1749 aa19.62■□□□□ 0.73
NUP54-214ENST00000514307 TTC41PQ6P2S7 1318 aa19.61■□□□□ 0.73
NUP54-214ENST00000514307 SBF2Q86WG5 1849 aa19.61■□□□□ 0.73
NUP54-214ENST00000514307 NUTM1Q86Y26 1132 aa19.61■□□□□ 0.73
NUP54-214ENST00000514307 KLHDC4Q8TBB5 520 aa19.61■□□□□ 0.73
NUP54-214ENST00000514307 AKAP2Q9Y2D5 859 aa19.61■□□□□ 0.73
NUP54-214ENST00000514307 HCLS1P14317 486 aaPredicted RBP19.6■□□□□ 0.73
NUP54-214ENST00000514307 ITGA6P23229 1130 aa19.6■□□□□ 0.73
NUP54-214ENST00000514307 AACSQ86V21 672 aa19.6■□□□□ 0.73
NUP54-214ENST00000514307 OTUD7AQ8TE49 926 aaPredicted RBP19.6■□□□□ 0.73
NUP54-214ENST00000514307 NPHP1O15259 732 aa19.59■□□□□ 0.73
NUP54-214ENST00000514307 GLRX3O76003 335 aaKnown RBP19.59■□□□□ 0.73
NUP54-214ENST00000514307 TFCP2Q12800 502 aa19.59■□□□□ 0.73
NUP54-214ENST00000514307 LDHAL6AQ6ZMR3 332 aa19.59■□□□□ 0.73
NUP54-214ENST00000514307 NLRP3Q96P20 1036 aa19.59■□□□□ 0.73
NUP54-214ENST00000514307 ECHDC1Q9NTX5 307 aa19.59■□□□□ 0.73
NUP54-214ENST00000514307 COL5A3P25940 1745 aaPredicted RBP19.59■□□□□ 0.73
NUP54-214ENST00000514307 SALL3Q9BXA9 1300 aa19.58■□□□□ 0.73
NUP54-214ENST00000514307 CDC45O75419 566 aa19.58■□□□□ 0.72
NUP54-214ENST00000514307 SF3B3Q15393 1217 aaKnown RBP19.58■□□□□ 0.72
NUP54-214ENST00000514307 SMIM5Q71RC9 77 aa19.58■□□□□ 0.72
NUP54-214ENST00000514307 CCDC125Q86Z20 511 aa19.58■□□□□ 0.72
NUP54-214ENST00000514307 NLGN1Q8N2Q7 840 aa19.58■□□□□ 0.72
NUP54-214ENST00000514307 AKT1S1Q96B36 256 aa19.58■□□□□ 0.72
NUP54-214ENST00000514307 LY75O60449 1722 aa19.58■□□□□ 0.72
NUP54-214ENST00000514307 ERFEQ4G0M1 354 aa19.57■□□□□ 0.72
NUP54-214ENST00000514307 ATG9AQ7Z3C6 839 aa19.57■□□□□ 0.72
NUP54-214ENST00000514307 ZNF594Q96JF6 807 aaPredicted RBP19.57■□□□□ 0.72
NUP54-214ENST00000514307 GREM2Q9H772 168 aa19.57■□□□□ 0.72
NUP54-214ENST00000514307 CNNM1Q9NRU3 951 aa19.57■□□□□ 0.72
NUP54-214ENST00000514307 AFDNP55196 1824 aaKnown RBP19.56■□□□□ 0.72
NUP54-214ENST00000514307 MYH14Q7Z406 1995 aaKnown RBP19.56■□□□□ 0.72
NUP54-214ENST00000514307 BAG6P46379 1132 aa19.56■□□□□ 0.72
NUP54-214ENST00000514307 TNNI3KQ59H18 835 aa19.56■□□□□ 0.72
NUP54-214ENST00000514307 DEFB132Q7Z7B7 95 aa19.56■□□□□ 0.72
NUP54-214ENST00000514307 EAF2Q96CJ1 260 aaPredicted RBP19.56■□□□□ 0.72
NUP54-214ENST00000514307 CCDC85AQ96PX6 553 aaPredicted RBP19.56■□□□□ 0.72
NUP54-214ENST00000514307 CDC5LQ99459 802 aaKnown RBP19.56■□□□□ 0.72
NUP54-214ENST00000514307 FPGT-TNNI3KV9GXZ4 949 aa19.56■□□□□ 0.72
NUP54-214ENST00000514307 TRIM6-TRIM34B2RNG4 842 aa19.55■□□□□ 0.72
NUP54-214ENST00000514307 MSH5O43196 834 aa19.55■□□□□ 0.72
NUP54-214ENST00000514307 GYS1P13807 737 aa19.55■□□□□ 0.72
NUP54-214ENST00000514307 SDSP20132 328 aa19.55■□□□□ 0.72
NUP54-214ENST00000514307 IGHMBP2P38935 993 aaKnown RBP19.55■□□□□ 0.72
NUP54-214ENST00000514307 MPHOSPH8Q99549 860 aa19.55■□□□□ 0.72
NUP54-214ENST00000514307 CCDC8Q9H0W5 538 aaPredicted RBP19.55■□□□□ 0.72
NUP54-214ENST00000514307 RTL9Q8NET4 1388 aa19.55■□□□□ 0.72
NUP54-214ENST00000514307 C4BP0C0L5 1744 aa19.54■□□□□ 0.72
NUP54-214ENST00000514307 GSPT1P15170 499 aaKnown RBP19.54■□□□□ 0.72
NUP54-214ENST00000514307 TM4SF1P30408 202 aa19.54■□□□□ 0.72
NUP54-214ENST00000514307 NFIXQ14938 502 aa19.54■□□□□ 0.72
NUP54-214ENST00000514307 LRRC24Q50LG9 513 aa19.54■□□□□ 0.72
NUP54-214ENST00000514307 AMIGO3Q86WK7 504 aa19.54■□□□□ 0.72
NUP54-214ENST00000514307 NEUROD6Q96NK8 337 aa19.54■□□□□ 0.72
NUP54-214ENST00000514307 CAMKK2Q96RR4 588 aa19.54■□□□□ 0.72
NUP54-214ENST00000514307 RIPOR2Q9Y4F9 1068 aa19.54■□□□□ 0.72
NUP54-214ENST00000514307 MROH5Q6ZUA9 1318 aa19.53■□□□□ 0.72
NUP54-214ENST00000514307 METTL24Q5JXM2 366 aa19.53■□□□□ 0.72
NUP54-214ENST00000514307 STK32BQ9NY57 414 aa19.53■□□□□ 0.72
NUP54-214ENST00000514307 CARMIL3Q8ND23 1372 aa19.53■□□□□ 0.72
NUP54-214ENST00000514307 CNTROBQ8N137 903 aa19.52■□□□□ 0.72
NUP54-214ENST00000514307 RILPL2Q969X0 211 aa19.52■□□□□ 0.72
NUP54-214ENST00000514307 PUS3Q9BZE2 481 aaKnown RBP19.52■□□□□ 0.72
NUP54-214ENST00000514307 NUP98P52948 1817 aa19.52■□□□□ 0.72
NUP54-214ENST00000514307 SERPINB2P05120 415 aa19.51■□□□□ 0.71
NUP54-214ENST00000514307 ATP5JP18859 108 aa19.51■□□□□ 0.71
NUP54-214ENST00000514307 ST5P78524 1137 aa19.51■□□□□ 0.71
NUP54-214ENST00000514307 EN1Q05925 392 aaPredicted RBP19.51■□□□□ 0.71
NUP54-214ENST00000514307 GORABQ5T7V8 394 aa19.51■□□□□ 0.71
NUP54-214ENST00000514307 CNBD1Q8NA66 436 aa19.51■□□□□ 0.71
NUP54-214ENST00000514307 PI4K2BQ8TCG2 481 aa19.51■□□□□ 0.71
NUP54-214ENST00000514307 ANP32AP39687 249 aaKnown RBP19.5■□□□□ 0.71
NUP54-214ENST00000514307 CCDC158Q5M9N0 1113 aa19.5■□□□□ 0.71
NUP54-214ENST00000514307 TBC1D9Q6ZT07 1266 aa19.5■□□□□ 0.71
NUP54-214ENST00000514307 COL23A1Q86Y22 540 aaPredicted RBP19.5■□□□□ 0.71
NUP54-214ENST00000514307 ANKRD18AQ8IVF6 992 aa19.5■□□□□ 0.71
NUP54-214ENST00000514307 EVI5LQ96CN4 794 aa19.5■□□□□ 0.71
NUP54-214ENST00000514307 TIMM10P62072 90 aa19.49■□□□□ 0.71
NUP54-214ENST00000514307 EZH2Q15910 746 aaKnown RBP19.49■□□□□ 0.71
NUP54-214ENST00000514307 DDX46Q7L014 1031 aaKnown RBP19.49■□□□□ 0.71
NUP54-214ENST00000514307 TICAM2Q86XR7 235 aa19.49■□□□□ 0.71
NUP54-214ENST00000514307 HIP1O00291 1037 aa19.48■□□□□ 0.71
NUP54-214ENST00000514307 PDE8BO95263 885 aa19.48■□□□□ 0.71
NUP54-214ENST00000514307 SLC15A2Q16348 729 aa19.48■□□□□ 0.71
NUP54-214ENST00000514307 ZNF827Q17R98 1081 aa19.48■□□□□ 0.71
NUP54-214ENST00000514307 ANKRD36CQ5JPF3 1778 aa19.47■□□□□ 0.71
NUP54-214ENST00000514307 A0A1B0GUL7 405 aa19.47■□□□□ 0.71
NUP54-214ENST00000514307 RPS8P62241 208 aaKnown RBP19.47■□□□□ 0.71
NUP54-214ENST00000514307 TSHZ3Q63HK5 1081 aa19.47■□□□□ 0.71
NUP54-214ENST00000514307 SEC31BQ9NQW1 1179 aa19.47■□□□□ 0.71
NUP54-214ENST00000514307 BSDC1Q9NW68 430 aaPredicted RBP19.47■□□□□ 0.71
NUP54-214ENST00000514307 DBNLQ9UJU6 430 aaKnown RBP19.47■□□□□ 0.71
NUP54-214ENST00000514307 SEC24BO95487 1268 aa19.46■□□□□ 0.71
NUP54-214ENST00000514307 ATP2B3Q16720 1220 aa19.46■□□□□ 0.71
NUP54-214ENST00000514307 RUFY2Q8WXA3 655 aa19.46■□□□□ 0.71
NUP54-214ENST00000514307 DBNDD2Q9BQY9 259 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms