RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 NGLY1Q96IV0 654 aa7.06□□□□□ -1.28
NUP54-212ENST00000513248 MBTPS1Q14703 1052 aa7.05□□□□□ -1.28
NUP54-212ENST00000513248 TRAPPC3LQ5T215 181 aa7.05□□□□□ -1.28
NUP54-212ENST00000513248 LENG1Q96BZ8 264 aaPredicted RBP7.05□□□□□ -1.28
NUP54-212ENST00000513248 HSH2DQ96JZ2 352 aa7.05□□□□□ -1.28
NUP54-212ENST00000513248 SUSD3Q96L08 255 aa7.05□□□□□ -1.28
NUP54-212ENST00000513248 CXXC1Q9P0U4 656 aaPredicted RBP7.05□□□□□ -1.28
NUP54-212ENST00000513248 A0A0A0MRY4 1105 aa7.04□□□□□ -1.28
NUP54-212ENST00000513248 PRMT3O60678 531 aa7.04□□□□□ -1.28
NUP54-212ENST00000513248 SELPP16109 830 aa7.04□□□□□ -1.28
NUP54-212ENST00000513248 RAC1P63000 192 aa7.04□□□□□ -1.28
NUP54-212ENST00000513248 RAB44Q7Z6P3 723 aaPredicted RBP7.04□□□□□ -1.28
NUP54-212ENST00000513248 TXNRD3Q86VQ6 643 aa7.04□□□□□ -1.28
NUP54-212ENST00000513248 COL26A1Q96A83 441 aa7.04□□□□□ -1.28
NUP54-212ENST00000513248 VTI1AQ96AJ9 217 aa7.04□□□□□ -1.28
NUP54-212ENST00000513248 PRIMPOLQ96LW4 560 aa7.04□□□□□ -1.28
NUP54-212ENST00000513248 FKBP5Q13451 457 aaPredicted RBP7.03□□□□□ -1.28
NUP54-212ENST00000513248 RTN1Q16799 776 aa7.03□□□□□ -1.28
NUP54-212ENST00000513248 ILDR2Q71H61 639 aa7.03□□□□□ -1.28
NUP54-212ENST00000513248 ZNF280CQ8ND82 737 aa7.03□□□□□ -1.28
NUP54-212ENST00000513248 SLC6A14Q9UN76 642 aa7.03□□□□□ -1.28
NUP54-212ENST00000513248 ATP2B4P23634 1241 aa7.02□□□□□ -1.29
NUP54-212ENST00000513248 PDE4CQ08493 712 aa7.02□□□□□ -1.29
NUP54-212ENST00000513248 LRP8Q14114 963 aa7.02□□□□□ -1.29
NUP54-212ENST00000513248 IER5Q5VY09 327 aa7.02□□□□□ -1.29
NUP54-212ENST00000513248 BTLAQ7Z6A9 289 aa7.02□□□□□ -1.29
NUP54-212ENST00000513248 BHMTQ93088 406 aa7.02□□□□□ -1.29
NUP54-212ENST00000513248 UBE2OQ9C0C9 1292 aaKnown RBP7.01□□□□□ -1.29
NUP54-212ENST00000513248 JPH1Q9HDC5 661 aaPredicted RBP7.01□□□□□ -1.29
NUP54-212ENST00000513248 CAPN12Q6ZSI9 719 aa7□□□□□ -1.29
NUP54-212ENST00000513248 NBPF11Q86T75 865 aa7□□□□□ -1.29
NUP54-212ENST00000513248 QTRT2Q9H974 415 aaKnown RBP7□□□□□ -1.29
NUP54-212ENST00000513248 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7□□□□□ -1.29
NUP54-212ENST00000513248 TGFBR3LH3BV60 316 aa6.99□□□□□ -1.29
NUP54-212ENST00000513248 BRD1O95696 1058 aa6.99□□□□□ -1.29
NUP54-212ENST00000513248 AFF1P51825 1210 aaKnown RBP6.99□□□□□ -1.29
NUP54-212ENST00000513248 PCSK7Q16549 785 aa6.99□□□□□ -1.29
NUP54-212ENST00000513248 TXNDC2Q86VQ3 553 aa6.99□□□□□ -1.29
NUP54-212ENST00000513248 FMR1NBQ8N0W7 255 aaPredicted RBP6.99□□□□□ -1.29
NUP54-212ENST00000513248 DTWD1Q8N5C7 304 aa6.99□□□□□ -1.29
NUP54-212ENST00000513248 MYO19Q96H55 970 aa6.99□□□□□ -1.29
NUP54-212ENST00000513248 SSBP4Q9BWG4 385 aaPredicted RBP6.99□□□□□ -1.29
NUP54-212ENST00000513248 KLK14Q9P0G3 267 aa6.99□□□□□ -1.29
NUP54-212ENST00000513248 SCNN1AP37088 669 aa6.98□□□□□ -1.29
NUP54-212ENST00000513248 DGKZQ13574 1117 aa6.98□□□□□ -1.29
NUP54-212ENST00000513248 MKNK1Q9BUB5 465 aa6.98□□□□□ -1.29
NUP54-212ENST00000513248 GSX2Q9BZM3 304 aa6.98□□□□□ -1.29
NUP54-212ENST00000513248 DNAJB12Q9NXW2 375 aaKnown RBP6.98□□□□□ -1.29
NUP54-212ENST00000513248 BCS1LQ9Y276 419 aa6.98□□□□□ -1.29
NUP54-212ENST00000513248 PSAPL1Q6NUJ1 521 aa6.97□□□□□ -1.29
NUP54-212ENST00000513248 SHISA2Q6UWI4 295 aa6.97□□□□□ -1.29
NUP54-212ENST00000513248 HOMEZQ8IX15 550 aa6.97□□□□□ -1.29
NUP54-212ENST00000513248 KRTAP4-12Q9BQ66 201 aa6.97□□□□□ -1.29
NUP54-212ENST00000513248 C11orf16Q9NQ32 467 aa6.97□□□□□ -1.29
NUP54-212ENST00000513248 FRRS1LQ9P0K9 344 aa6.97□□□□□ -1.29
NUP54-212ENST00000513248 NAGPAQ9UK23 515 aa6.97□□□□□ -1.29
NUP54-212ENST00000513248 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.97□□□□□ -1.29
NUP54-212ENST00000513248 PTCD1O75127 700 aaKnown RBP6.96□□□□□ -1.3
NUP54-212ENST00000513248 RGS9O75916 674 aaPredicted RBP6.96□□□□□ -1.3
NUP54-212ENST00000513248 MAP3K6O95382 1288 aa6.96□□□□□ -1.3
NUP54-212ENST00000513248 TBC1D8BQ0IIM8 1120 aa6.96□□□□□ -1.3
NUP54-212ENST00000513248 CCINQ13939 588 aa6.96□□□□□ -1.3
NUP54-212ENST00000513248 C11orf91Q3C1V1 193 aa6.96□□□□□ -1.3
NUP54-212ENST00000513248 NUDT8Q8WV74 236 aa6.96□□□□□ -1.3
NUP54-212ENST00000513248 TP53INP1Q96A56 240 aa6.96□□□□□ -1.3
NUP54-212ENST00000513248 PNMA5Q96PV4 448 aa6.96□□□□□ -1.3
NUP54-212ENST00000513248 DMGDHQ9UI17 866 aaKnown RBP6.96□□□□□ -1.3
NUP54-212ENST00000513248 LRFN2Q9ULH4 789 aa6.96□□□□□ -1.3
NUP54-212ENST00000513248 GNEQ9Y223 722 aaKnown RBP6.96□□□□□ -1.3
NUP54-212ENST00000513248 EPB42P16452 691 aa6.95□□□□□ -1.3
NUP54-212ENST00000513248 COX20Q5RI15 118 aa6.95□□□□□ -1.3
NUP54-212ENST00000513248 KRTAP1-3Q8IUG1 177 aa6.95□□□□□ -1.3
NUP54-212ENST00000513248 SAP130Q9H0E3 1048 aa6.95□□□□□ -1.3
NUP54-212ENST00000513248 IGFLR1Q9H665 355 aa6.95□□□□□ -1.3
NUP54-212ENST00000513248 SEPT3Q9UH03 358 aa6.95□□□□□ -1.3
NUP54-212ENST00000513248 USP21Q9UK80 565 aa6.95□□□□□ -1.3
NUP54-212ENST00000513248 TNFRSF10BO14763 440 aa6.94□□□□□ -1.3
NUP54-212ENST00000513248 HYAL3O43820 417 aaPredicted RBP6.94□□□□□ -1.3
NUP54-212ENST00000513248 NPR3P17342 541 aa6.94□□□□□ -1.3
NUP54-212ENST00000513248 NFKB1P19838 968 aa6.94□□□□□ -1.3
NUP54-212ENST00000513248 IDH3AP50213 366 aa6.94□□□□□ -1.3
NUP54-212ENST00000513248 ECM1Q16610 540 aa6.94□□□□□ -1.3
NUP54-212ENST00000513248 MSL1Q68DK7 614 aa6.94□□□□□ -1.3
NUP54-212ENST00000513248 B4GALNT3Q6L9W6 998 aa6.94□□□□□ -1.3
NUP54-212ENST00000513248 C16orf46Q6P387 395 aa6.94□□□□□ -1.3
NUP54-212ENST00000513248 FBXO11Q86XK2 927 aa6.94□□□□□ -1.3
NUP54-212ENST00000513248 DMRTC2Q8IXT2 367 aaPredicted RBP6.94□□□□□ -1.3
NUP54-212ENST00000513248 TTC9Q92623 222 aa6.94□□□□□ -1.3
NUP54-212ENST00000513248 MICAL2O94851 1124 aa6.93□□□□□ -1.3
NUP54-212ENST00000513248 IFT43Q96FT9 208 aa6.93□□□□□ -1.3
NUP54-212ENST00000513248 PDIA4P13667 645 aaKnown RBP6.92□□□□□ -1.3
NUP54-212ENST00000513248 ARID4AP29374 1257 aaPredicted RBP6.92□□□□□ -1.3
NUP54-212ENST00000513248 INPP5BP32019 993 aa6.92□□□□□ -1.3
NUP54-212ENST00000513248 ARSDP51689 593 aa6.92□□□□□ -1.3
NUP54-212ENST00000513248 NAA30Q147X3 362 aaPredicted RBP6.92□□□□□ -1.3
NUP54-212ENST00000513248 GRIK5Q16478 980 aa6.92□□□□□ -1.3
NUP54-212ENST00000513248 FAM26DQ5JW98 314 aa6.92□□□□□ -1.3
NUP54-212ENST00000513248 SLC51AQ86UW1 340 aa6.92□□□□□ -1.3
NUP54-212ENST00000513248 FAM35AQ86V20 835 aa6.92□□□□□ -1.3
NUP54-212ENST00000513248 TRPM4Q8TD43 1214 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms