RNA–Protein interactions for RNA: ENST00000508249.1

UBE2D3-223, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 604 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-223	ENST00000508249	LAMB1	P07942	1786 aa		12.19	□□□□□ -0.46
UBE2D3-223	ENST00000508249	ABCC4	O15439	1325 aa		12.18	□□□□□ -0.46
UBE2D3-223	ENST00000508249	MAP3K15	Q6ZN16	1313 aa		12.18	□□□□□ -0.46
UBE2D3-223	ENST00000508249	TCERG1	O14776	1098 aa	Known RBP	12.18	□□□□□ -0.46
UBE2D3-223	ENST00000508249	SUSD4	Q5VX71	490 aa		12.18	□□□□□ -0.46
UBE2D3-223	ENST00000508249	MCM10	Q7L590	875 aa		12.18	□□□□□ -0.46
UBE2D3-223	ENST00000508249	RPGR	Q92834	1020 aa	Known RBP	12.18	□□□□□ -0.46
UBE2D3-223	ENST00000508249	ATP6V0A2	Q9Y487	856 aa		12.18	□□□□□ -0.46
UBE2D3-223	ENST00000508249	PAPPA2	Q9BXP8	1791 aa		12.18	□□□□□ -0.46
UBE2D3-223	ENST00000508249	ERVV-1	B6SEH8	477 aa		12.17	□□□□□ -0.46
UBE2D3-223	ENST00000508249	NEFM	P07197	916 aa		12.17	□□□□□ -0.46
UBE2D3-223	ENST00000508249	GPT	P24298	496 aa		12.17	□□□□□ -0.46
UBE2D3-223	ENST00000508249	KIF23	Q02241	960 aa	Predicted RBP	12.17	□□□□□ -0.46
UBE2D3-223	ENST00000508249	KIAA2012	Q0VF49	1180 aa		12.17	□□□□□ -0.46
UBE2D3-223	ENST00000508249	RGMB	Q6NW40	437 aa		12.17	□□□□□ -0.46
UBE2D3-223	ENST00000508249	CDC37L1	Q7L3B6	337 aa		12.17	□□□□□ -0.46
UBE2D3-223	ENST00000508249	NYX	Q9GZU5	481 aa		12.17	□□□□□ -0.46
UBE2D3-223	ENST00000508249	VPS33B	Q9H267	617 aa		12.17	□□□□□ -0.46
UBE2D3-223	ENST00000508249	HPS5	Q9UPZ3	1129 aa		12.17	□□□□□ -0.46
UBE2D3-223	ENST00000508249	ADM5	C9JUS6	153 aa		12.16	□□□□□ -0.46
UBE2D3-223	ENST00000508249	RAD17	O75943	681 aa		12.16	□□□□□ -0.46
UBE2D3-223	ENST00000508249	SLC10A3	P09131	477 aa		12.16	□□□□□ -0.46
UBE2D3-223	ENST00000508249	U2AF1L5	P0DN76	240 aa	Predicted RBP	12.16	□□□□□ -0.46
UBE2D3-223	ENST00000508249	PRKAR2B	P31323	418 aa		12.16	□□□□□ -0.46
UBE2D3-223	ENST00000508249	U2AF1	Q01081	240 aa	Known RBP eCLIP	12.16	□□□□□ -0.46	2e-12	■□□□□ 11.1
UBE2D3-223	ENST00000508249	DCTN1	Q14203	1278 aa		12.16	□□□□□ -0.46
UBE2D3-223	ENST00000508249	LRP10	Q7Z4F1	713 aa		12.16	□□□□□ -0.46
UBE2D3-223	ENST00000508249	CTU1	Q7Z7A3	348 aa	Known RBP	12.16	□□□□□ -0.46
UBE2D3-223	ENST00000508249	USP48	Q86UV5	1035 aa		12.16	□□□□□ -0.46
UBE2D3-223	ENST00000508249	ZNF34	Q8IZ26	560 aa		12.16	□□□□□ -0.46
UBE2D3-223	ENST00000508249	TRPA1	O75762	1119 aa		12.15	□□□□□ -0.46
UBE2D3-223	ENST00000508249	GTF2E1	P29083	439 aa	Predicted RBP	12.15	□□□□□ -0.46
UBE2D3-223	ENST00000508249	MICALL2	Q8IY33	904 aa		12.15	□□□□□ -0.46
UBE2D3-223	ENST00000508249	RBM17	Q96I25	401 aa	Known RBP	12.15	□□□□□ -0.46
UBE2D3-223	ENST00000508249	CSRNP1	Q96S65	589 aa		12.15	□□□□□ -0.46
UBE2D3-223	ENST00000508249	GBA2	Q9HCG7	927 aa	Predicted RBP	12.15	□□□□□ -0.46
UBE2D3-223	ENST00000508249	SAMD7	Q7Z3H4	446 aa		12.14	□□□□□ -0.47
UBE2D3-223	ENST00000508249	PRKRIP1	Q9H875	184 aa	Predicted RBP	12.14	□□□□□ -0.47
UBE2D3-223	ENST00000508249	CNOT7	Q9UIV1	285 aa	Known RBP	12.14	□□□□□ -0.47
UBE2D3-223	ENST00000508249	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.14	□□□□□ -0.47
UBE2D3-223	ENST00000508249	RTL9	Q8NET4	1388 aa		12.14	□□□□□ -0.47
UBE2D3-223	ENST00000508249	RANBP2	P49792	3224 aa	Known RBP	12.14	□□□□□ -0.47
UBE2D3-223	ENST00000508249	ASTN2	O75129	1339 aa	Predicted RBP	12.13	□□□□□ -0.47
UBE2D3-223	ENST00000508249	RASAL3	Q86YV0	1011 aa		12.13	□□□□□ -0.47
UBE2D3-223	ENST00000508249	ZBTB3	Q9H5J0	574 aa		12.13	□□□□□ -0.47
UBE2D3-223	ENST00000508249	HTATSF1	O43719	755 aa	Known RBP	12.12	□□□□□ -0.47
UBE2D3-223	ENST00000508249	SLC10A5	Q5PT55	438 aa		12.12	□□□□□ -0.47
UBE2D3-223	ENST00000508249	KRT26	Q7Z3Y9	468 aa		12.12	□□□□□ -0.47
UBE2D3-223	ENST00000508249	MIS18A	Q9NYP9	233 aa		12.12	□□□□□ -0.47
UBE2D3-223	ENST00000508249	COL6A3	P12111	3177 aa		12.12	□□□□□ -0.47
UBE2D3-223	ENST00000508249	ZNF609	O15014	1411 aa		12.11	□□□□□ -0.47
UBE2D3-223	ENST00000508249	PSMD14	O00487	310 aa		12.11	□□□□□ -0.47
UBE2D3-223	ENST00000508249	ZNF157	P51786	506 aa	Predicted RBP	12.11	□□□□□ -0.47
UBE2D3-223	ENST00000508249	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	12.11	□□□□□ -0.47
UBE2D3-223	ENST00000508249	HABP4	Q5JVS0	413 aa	Known RBP	12.11	□□□□□ -0.47
UBE2D3-223	ENST00000508249	DPP8	Q6V1X1	898 aa	Predicted RBP	12.11	□□□□□ -0.47
UBE2D3-223	ENST00000508249	GIGYF2	Q6Y7W6	1299 aa	Known RBP	12.11	□□□□□ -0.47
UBE2D3-223	ENST00000508249	SP8	Q8IXZ3	490 aa		12.11	□□□□□ -0.47
UBE2D3-223	ENST00000508249	NGEF	Q8N5V2	710 aa		12.11	□□□□□ -0.47
UBE2D3-223	ENST00000508249	SUPT20H	Q8NEM7	779 aa		12.11	□□□□□ -0.47
UBE2D3-223	ENST00000508249	CCDC102A	Q96A19	550 aa		12.11	□□□□□ -0.47
UBE2D3-223	ENST00000508249	BCL2L13	Q9BXK5	485 aa		12.11	□□□□□ -0.47
UBE2D3-223	ENST00000508249	TNIP1	Q15025	636 aa		12.1	□□□□□ -0.47
UBE2D3-223	ENST00000508249	RTF1	Q92541	710 aa	Known RBP	12.1	□□□□□ -0.47
UBE2D3-223	ENST00000508249	DPF2	Q92785	391 aa		12.1	□□□□□ -0.47
UBE2D3-223	ENST00000508249	KCNQ5	Q9NR82	932 aa		12.1	□□□□□ -0.47
UBE2D3-223	ENST00000508249	MAPK8IP3	Q9UPT6	1336 aa		12.1	□□□□□ -0.47
UBE2D3-223	ENST00000508249	EIF4A1	P60842	406 aa	Known RBP	12.09	□□□□□ -0.47
UBE2D3-223	ENST00000508249	PDIA6	Q15084	440 aa		12.09	□□□□□ -0.47
UBE2D3-223	ENST00000508249	MPND	Q8N594	471 aa		12.09	□□□□□ -0.47
UBE2D3-223	ENST00000508249	ZNF296	Q8WUU4	475 aa	Predicted RBP	12.09	□□□□□ -0.47
UBE2D3-223	ENST00000508249	ANP32C	O43423	234 aa		12.08	□□□□□ -0.48
UBE2D3-223	ENST00000508249	MYL6B	P14649	208 aa		12.08	□□□□□ -0.48
UBE2D3-223	ENST00000508249	FXR1	P51114	621 aa	Known RBP eCLIP	12.08	□□□□□ -0.48
UBE2D3-223	ENST00000508249	WDR43	Q15061	677 aa	Known RBP eCLIP	12.08	□□□□□ -0.48
UBE2D3-223	ENST00000508249	TAF7	Q15545	349 aa	Predicted RBP	12.08	□□□□□ -0.48
UBE2D3-223	ENST00000508249	KIF6	Q6ZMV9	814 aa		12.08	□□□□□ -0.48
UBE2D3-223	ENST00000508249	C2orf69	Q8N8R5	385 aa		12.08	□□□□□ -0.48
UBE2D3-223	ENST00000508249	CDCA5	Q96FF9	252 aa		12.08	□□□□□ -0.48
UBE2D3-223	ENST00000508249	NLRP3	Q96P20	1036 aa		12.08	□□□□□ -0.48
UBE2D3-223	ENST00000508249	GGA3	Q9NZ52	723 aa		12.08	□□□□□ -0.48
UBE2D3-223	ENST00000508249		H7C1D1	291 aa		12.07	□□□□□ -0.48
UBE2D3-223	ENST00000508249	BBOX1	O75936	387 aa		12.07	□□□□□ -0.48
UBE2D3-223	ENST00000508249	GRAP	Q13588	217 aa		12.07	□□□□□ -0.48
UBE2D3-223	ENST00000508249	PROSER3	Q2NL68	480 aa		12.07	□□□□□ -0.48
UBE2D3-223	ENST00000508249	PARP10	Q53GL7	1025 aa		12.07	□□□□□ -0.48
UBE2D3-223	ENST00000508249	GRAPL	Q8TC17	118 aa	Predicted RBP	12.07	□□□□□ -0.48
UBE2D3-223	ENST00000508249	DBNDD1	Q9H9R9	158 aa		12.07	□□□□□ -0.48
UBE2D3-223	ENST00000508249	RRP7A	Q9Y3A4	280 aa	Known RBP	12.07	□□□□□ -0.48
UBE2D3-223	ENST00000508249		A0A0C4DFX4	3053 aa		12.06	□□□□□ -0.48
UBE2D3-223	ENST00000508249	HCLS1	P14317	486 aa	Predicted RBP	12.06	□□□□□ -0.48
UBE2D3-223	ENST00000508249	LMOD3	Q0VAK6	560 aa		12.06	□□□□□ -0.48
UBE2D3-223	ENST00000508249	PKN2	Q16513	984 aa	Known RBP	12.06	□□□□□ -0.48
UBE2D3-223	ENST00000508249	KIF4B	Q2VIQ3	1234 aa		12.06	□□□□□ -0.48
UBE2D3-223	ENST00000508249	PPP1R42	Q7Z4L9	355 aa		12.06	□□□□□ -0.48
UBE2D3-223	ENST00000508249	PLEKHF1	Q96S99	279 aa		12.06	□□□□□ -0.48
UBE2D3-223	ENST00000508249	THUMPD2	Q9BTF0	503 aa	Known RBP	12.06	□□□□□ -0.48
UBE2D3-223	ENST00000508249	R3HDML	Q9H3Y0	253 aa		12.06	□□□□□ -0.48
UBE2D3-223	ENST00000508249	ERBB4	Q15303	1308 aa		12.06	□□□□□ -0.48
UBE2D3-223	ENST00000508249	KIAA0100	Q14667	2235 aa	Known RBP	12.05	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms