RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 NPHP1O15259 732 aa10.44□□□□□ -0.74
SCN1A-207ENST00000507401 SRGNP10124 158 aa10.44□□□□□ -0.74
SCN1A-207ENST00000507401 NEUROD2Q15784 382 aa10.44□□□□□ -0.74
SCN1A-207ENST00000507401 HLFQ16534 295 aa10.44□□□□□ -0.74
SCN1A-207ENST00000507401 CCDC146Q8IYE0 955 aa10.44□□□□□ -0.74
SCN1A-207ENST00000507401 ZNF622Q969S3 477 aaKnown RBP eCLIP10.44□□□□□ -0.74
SCN1A-207ENST00000507401 MASTLQ96GX5 879 aa10.44□□□□□ -0.74
SCN1A-207ENST00000507401 SBF1O95248 1867 aa10.43□□□□□ -0.74
SCN1A-207ENST00000507401 ANKRD31Q8N7Z5 1873 aa10.43□□□□□ -0.74
SCN1A-207ENST00000507401 LMNB1P20700 586 aa10.43□□□□□ -0.74
SCN1A-207ENST00000507401 PDE4AP27815 886 aa10.43□□□□□ -0.74
SCN1A-207ENST00000507401 MFSD10Q14728 455 aa10.43□□□□□ -0.74
SCN1A-207ENST00000507401 PDIA6Q15084 440 aa10.43□□□□□ -0.74
SCN1A-207ENST00000507401 PPP1R15BQ5SWA1 713 aa10.43□□□□□ -0.74
SCN1A-207ENST00000507401 KIF6Q6ZMV9 814 aa10.43□□□□□ -0.74
SCN1A-207ENST00000507401 ZNF526Q8TF50 670 aaPredicted RBP10.43□□□□□ -0.74
SCN1A-207ENST00000507401 NYXQ9GZU5 481 aa10.43□□□□□ -0.74
SCN1A-207ENST00000507401 LHX6Q9UPM6 363 aa10.43□□□□□ -0.74
SCN1A-207ENST00000507401 KDM2BQ8NHM5 1336 aa10.42□□□□□ -0.74
SCN1A-207ENST00000507401 MYL6BP14649 208 aa10.42□□□□□ -0.74
SCN1A-207ENST00000507401 NPR1P16066 1061 aa10.42□□□□□ -0.74
SCN1A-207ENST00000507401 GTF2E1P29083 439 aaPredicted RBP10.42□□□□□ -0.74
SCN1A-207ENST00000507401 SOGA3Q5TF21 947 aa10.42□□□□□ -0.74
SCN1A-207ENST00000507401 GIGYF2Q6Y7W6 1299 aaKnown RBP10.42□□□□□ -0.74
SCN1A-207ENST00000507401 TTLL7Q6ZT98 887 aa10.42□□□□□ -0.74
SCN1A-207ENST00000507401 LRP10Q7Z4F1 713 aa10.42□□□□□ -0.74
SCN1A-207ENST00000507401 ZNF34Q8IZ26 560 aa10.42□□□□□ -0.74
SCN1A-207ENST00000507401 CCDC24Q8N4L8 307 aa10.42□□□□□ -0.74
SCN1A-207ENST00000507401 NGEFQ8N5V2 710 aa10.42□□□□□ -0.74
SCN1A-207ENST00000507401 OXER1Q8TDS5 423 aa10.42□□□□□ -0.74
SCN1A-207ENST00000507401 CFAP44Q96MT7 982 aa10.42□□□□□ -0.74
SCN1A-207ENST00000507401 RNF181Q9P0P0 153 aa10.42□□□□□ -0.74
SCN1A-207ENST00000507401 TOMM70O94826 608 aa10.41□□□□□ -0.74
SCN1A-207ENST00000507401 NEFLP07196 543 aa10.41□□□□□ -0.74
SCN1A-207ENST00000507401 HOXB7P09629 217 aa10.41□□□□□ -0.74
SCN1A-207ENST00000507401 EIF2S2P20042 333 aaKnown RBP10.41□□□□□ -0.74
SCN1A-207ENST00000507401 ALDH1B1P30837 517 aa10.41□□□□□ -0.74
SCN1A-207ENST00000507401 CALD1Q05682 793 aaKnown RBP10.41□□□□□ -0.74
SCN1A-207ENST00000507401 NUP98P52948 1817 aa10.41□□□□□ -0.74
SCN1A-207ENST00000507401 LTBP3Q9NS15 1303 aa10.4□□□□□ -0.74
SCN1A-207ENST00000507401 FANCIQ9NVI1 1328 aa10.4□□□□□ -0.74
SCN1A-207ENST00000507401 SENP3-EIF4A1A0A087X0R7 540 aa10.4□□□□□ -0.74
SCN1A-207ENST00000507401 NFKBIEO00221 500 aa10.4□□□□□ -0.74
SCN1A-207ENST00000507401 C21orf2O43822 256 aa10.4□□□□□ -0.74
SCN1A-207ENST00000507401 ZNF853P0CG23 659 aa10.4□□□□□ -0.74
SCN1A-207ENST00000507401 MMRN1Q13201 1228 aa10.4□□□□□ -0.74
SCN1A-207ENST00000507401 PARP10Q53GL7 1025 aa10.4□□□□□ -0.74
SCN1A-207ENST00000507401 ERICH6BQ5W0A0 696 aa10.4□□□□□ -0.74
SCN1A-207ENST00000507401 C7orf43Q8WVR3 580 aa10.4□□□□□ -0.74
SCN1A-207ENST00000507401 DDX21Q9NR30 783 aaKnown RBP eCLIP10.4□□□□□ -0.74
SCN1A-207ENST00000507401 IBTKQ9P2D0 1353 aaPredicted RBP10.39□□□□□ -0.75
SCN1A-207ENST00000507401 GLTPD2A6NH11 291 aa10.39□□□□□ -0.75
SCN1A-207ENST00000507401 APAF1O14727 1248 aa10.39□□□□□ -0.75
SCN1A-207ENST00000507401 HOXA10P31260 410 aaPredicted RBP10.39□□□□□ -0.75
SCN1A-207ENST00000507401 CRY2Q49AN0 593 aa10.39□□□□□ -0.75
SCN1A-207ENST00000507401 HSP90AB3PQ58FF7 597 aa10.39□□□□□ -0.75
SCN1A-207ENST00000507401 SLC10A5Q5PT55 438 aa10.39□□□□□ -0.75
SCN1A-207ENST00000507401 PRPF40BQ6NWY9 871 aaKnown RBP10.39□□□□□ -0.75
SCN1A-207ENST00000507401 POTEEQ6S8J3 1075 aa10.39□□□□□ -0.75
SCN1A-207ENST00000507401 PPP1R42Q7Z4L9 355 aa10.39□□□□□ -0.75
SCN1A-207ENST00000507401 LARP6Q9BRS8 491 aaKnown RBP10.39□□□□□ -0.75
SCN1A-207ENST00000507401 CHMP4AQ9BY43 222 aa10.39□□□□□ -0.75
SCN1A-207ENST00000507401 ZBTB3Q9H5J0 574 aa10.39□□□□□ -0.75
SCN1A-207ENST00000507401 LAS1LQ9Y4W2 734 aaKnown RBP10.39□□□□□ -0.75
SCN1A-207ENST00000507401 SLX4Q8IY92 1834 aa10.38□□□□□ -0.75
SCN1A-207ENST00000507401 FAM177BA6PVY3 158 aa10.38□□□□□ -0.75
SCN1A-207ENST00000507401 HSPA6P17066 643 aa10.38□□□□□ -0.75
SCN1A-207ENST00000507401 PRELPP51888 382 aa10.38□□□□□ -0.75
SCN1A-207ENST00000507401 GNAI1P63096 354 aa10.38□□□□□ -0.75
SCN1A-207ENST00000507401 RASSF7Q02833 373 aa10.38□□□□□ -0.75
SCN1A-207ENST00000507401 GRIPAP1Q4V328 841 aa10.38□□□□□ -0.75
SCN1A-207ENST00000507401 SUSD4Q5VX71 490 aa10.38□□□□□ -0.75
SCN1A-207ENST00000507401 CC2D2BQ6DHV5 1058 aa10.38□□□□□ -0.75
SCN1A-207ENST00000507401 COPS6Q7L5N1 327 aa10.38□□□□□ -0.75
SCN1A-207ENST00000507401 TAOK3Q9H2K8 898 aa10.38□□□□□ -0.75
SCN1A-207ENST00000507401 NMRK2Q9NPI5 230 aa10.38□□□□□ -0.75
SCN1A-207ENST00000507401 IFT57Q9NWB7 429 aa10.38□□□□□ -0.75
SCN1A-207ENST00000507401 DBF4Q9UBU7 674 aaPredicted RBP10.38□□□□□ -0.75
SCN1A-207ENST00000507401 RIC1Q4ADV7 1423 aa10.38□□□□□ -0.75
SCN1A-207ENST00000507401 FER1L6Q2WGJ9 1857 aa10.38□□□□□ -0.75
SCN1A-207ENST00000507401 RNF123Q5XPI4 1314 aa10.37□□□□□ -0.75
SCN1A-207ENST00000507401 UBN2Q6ZU65 1347 aa10.37□□□□□ -0.75
SCN1A-207ENST00000507401 ARFGEF2Q9Y6D5 1785 aa10.37□□□□□ -0.75
SCN1A-207ENST00000507401 COL11A2P13942 1736 aaPredicted RBP10.37□□□□□ -0.75
SCN1A-207ENST00000507401 GPTP24298 496 aa10.37□□□□□ -0.75
SCN1A-207ENST00000507401 TCIRG1Q13488 830 aa10.37□□□□□ -0.75
SCN1A-207ENST00000507401 CCDC27Q2M243 656 aa10.37□□□□□ -0.75
SCN1A-207ENST00000507401 PROSER3Q2NL68 480 aa10.37□□□□□ -0.75
SCN1A-207ENST00000507401 CCDC88AQ3V6T2 1871 aa10.37□□□□□ -0.75
SCN1A-207ENST00000507401 ERFEQ4G0M1 354 aa10.37□□□□□ -0.75
SCN1A-207ENST00000507401 RTKN2Q8IZC4 609 aa10.37□□□□□ -0.75
SCN1A-207ENST00000507401 RBM46Q8TBY0 533 aaKnown RBP10.37□□□□□ -0.75
SCN1A-207ENST00000507401 DDX27Q96GQ7 796 aaKnown RBP10.37□□□□□ -0.75
SCN1A-207ENST00000507401 RRAGCQ9HB90 399 aa10.37□□□□□ -0.75
SCN1A-207ENST00000507401 MBIPQ9NS73 344 aa10.37□□□□□ -0.75
SCN1A-207ENST00000507401 HYPKQ9NX55 129 aa10.37□□□□□ -0.75
SCN1A-207ENST00000507401 NTSR2O95665 410 aa10.36□□□□□ -0.75
SCN1A-207ENST00000507401 VEGFAP15692 232 aaPredicted RBP10.36□□□□□ -0.75
SCN1A-207ENST00000507401 FSTL1Q12841 308 aa10.36□□□□□ -0.75
SCN1A-207ENST00000507401 KRT24Q2M2I5 525 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms