RNA–Protein interactions for RNA: ENST00000495688.5

PTPN7-217, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 2,689 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-217ENST00000495688 TFCP2Q12800 502 aa15.48■□□□□ 0.07
PTPN7-217ENST00000495688 ATP5J2-PTCD1G3V325 749 aa15.47■□□□□ 0.07
PTPN7-217ENST00000495688 PTCD1O75127 700 aaKnown RBP15.47■□□□□ 0.07
PTPN7-217ENST00000495688 SLC52A2Q9HAB3 445 aa15.47■□□□□ 0.07
PTPN7-217ENST00000495688 NLRP2Q9NX02 1062 aa15.47■□□□□ 0.07
PTPN7-217ENST00000495688 DACT1Q9NYF0 836 aa15.47■□□□□ 0.07
PTPN7-217ENST00000495688 C5P01031 1676 aa15.47■□□□□ 0.07
PTPN7-217ENST00000495688 KDM6AO15550 1401 aaPredicted RBP15.47■□□□□ 0.07
PTPN7-217ENST00000495688 PTPN12Q05209 780 aaKnown RBP15.47■□□□□ 0.07
PTPN7-217ENST00000495688 UBE3BQ7Z3V4 1068 aa15.47■□□□□ 0.07
PTPN7-217ENST00000495688 KRT28Q7Z3Y7 464 aa15.47■□□□□ 0.07
PTPN7-217ENST00000495688 DDX11Q96FC9 970 aa15.47■□□□□ 0.07
PTPN7-217ENST00000495688 DNAJC2Q99543 621 aaKnown RBP15.47■□□□□ 0.07
PTPN7-217ENST00000495688 METTL22Q9BUU2 404 aaPredicted RBP15.47■□□□□ 0.07
PTPN7-217ENST00000495688 LRRC2Q9BYS8 371 aa15.47■□□□□ 0.07
PTPN7-217ENST00000495688 KCNF1Q9H3M0 494 aa15.47■□□□□ 0.07
PTPN7-217ENST00000495688 DYNC1I1O14576 645 aa15.46■□□□□ 0.07
PTPN7-217ENST00000495688 CCDC192P0DO97 292 aa15.46■□□□□ 0.07
PTPN7-217ENST00000495688 SLFNL1Q499Z3 407 aa15.46■□□□□ 0.07
PTPN7-217ENST00000495688 NPHP3Q7Z494 1330 aa15.46■□□□□ 0.07
PTPN7-217ENST00000495688 SLIT3O75094 1523 aa15.46■□□□□ 0.07
PTPN7-217ENST00000495688 ANKRD13DQ6ZTN6 518 aa15.46■□□□□ 0.07
PTPN7-217ENST00000495688 LUZP1Q86V48 1076 aa15.46■□□□□ 0.07
PTPN7-217ENST00000495688 RAPGEF4Q8WZA2 1011 aa15.46■□□□□ 0.07
PTPN7-217ENST00000495688 NUP62CLQ9H1M0 184 aa15.46■□□□□ 0.07
PTPN7-217ENST00000495688 FAM177BA6PVY3 158 aa15.45■□□□□ 0.06
PTPN7-217ENST00000495688 RFX5P48382 616 aaPredicted RBP15.45■□□□□ 0.06
PTPN7-217ENST00000495688 ANKRD1Q15327 319 aa15.45■□□□□ 0.06
PTPN7-217ENST00000495688 TNNI3KQ59H18 835 aa15.45■□□□□ 0.06
PTPN7-217ENST00000495688 DDX46Q7L014 1031 aaKnown RBP15.45■□□□□ 0.06
PTPN7-217ENST00000495688 SPATA32Q96LK8 384 aa15.45■□□□□ 0.06
PTPN7-217ENST00000495688 DBNDD2Q9BQY9 259 aa15.45■□□□□ 0.06
PTPN7-217ENST00000495688 PYCARDQ9ULZ3 195 aa15.45■□□□□ 0.06
PTPN7-217ENST00000495688 MRVI1Q9Y6F6 885 aa15.45■□□□□ 0.06
PTPN7-217ENST00000495688 FPGT-TNNI3KV9GXZ4 949 aa15.45■□□□□ 0.06
PTPN7-217ENST00000495688 PDCP20941 246 aa15.45■□□□□ 0.06
PTPN7-217ENST00000495688 MAP3K11Q16584 847 aa15.45■□□□□ 0.06
PTPN7-217ENST00000495688 LRP10Q7Z4F1 713 aa15.45■□□□□ 0.06
PTPN7-217ENST00000495688 DDX17Q92841 729 aaKnown RBP15.45■□□□□ 0.06
PTPN7-217ENST00000495688 TYRO3Q06418 890 aa15.44■□□□□ 0.06
PTPN7-217ENST00000495688 ZMYND15Q9H091 742 aa15.44■□□□□ 0.06
PTPN7-217ENST00000495688 PHKG2P15735 406 aa15.44■□□□□ 0.06
PTPN7-217ENST00000495688 LEO1Q8WVC0 666 aaPredicted RBP15.44■□□□□ 0.06
PTPN7-217ENST00000495688 COPRSQ9NQ92 184 aa15.44■□□□□ 0.06
PTPN7-217ENST00000495688 JCADQ9P266 1359 aa15.44■□□□□ 0.06
PTPN7-217ENST00000495688 ZNF609O15014 1411 aa15.44■□□□□ 0.06
PTPN7-217ENST00000495688 ELP1O95163 1332 aa15.43■□□□□ 0.06
PTPN7-217ENST00000495688 PPFIA3O75145 1194 aa15.43■□□□□ 0.06
PTPN7-217ENST00000495688 CYP21A2P08686 494 aa15.43■□□□□ 0.06
PTPN7-217ENST00000495688 ATP5JP18859 108 aa15.43■□□□□ 0.06
PTPN7-217ENST00000495688 USPL1Q5W0Q7 1092 aa15.43■□□□□ 0.06
PTPN7-217ENST00000495688 PGBD1Q96JS3 809 aa15.43■□□□□ 0.06
PTPN7-217ENST00000495688 NEK1Q96PY6 1258 aa15.43■□□□□ 0.06
PTPN7-217ENST00000495688 GOLGA6L4A6NEF3 574 aa15.43■□□□□ 0.06
PTPN7-217ENST00000495688 NR1I2O75469 434 aa15.43■□□□□ 0.06
PTPN7-217ENST00000495688 Q6ZUG5 572 aa15.43■□□□□ 0.06
PTPN7-217ENST00000495688 MYRIPQ8NFW9 859 aa15.43■□□□□ 0.06
PTPN7-217ENST00000495688 FAM200AQ8TCP9 573 aa15.43■□□□□ 0.06
PTPN7-217ENST00000495688 TNMDQ9H2S6 317 aa15.43■□□□□ 0.06
PTPN7-217ENST00000495688 HMG20BQ9P0W2 317 aa15.43■□□□□ 0.06
PTPN7-217ENST00000495688 TSGA10IPQ3SY00 556 aa15.42■□□□□ 0.06
PTPN7-217ENST00000495688 ANO6Q4KMQ2 910 aa15.42■□□□□ 0.06
PTPN7-217ENST00000495688 BRF1Q92994 677 aa15.42■□□□□ 0.06
PTPN7-217ENST00000495688 GTF3C6Q969F1 213 aa15.42■□□□□ 0.06
PTPN7-217ENST00000495688 A0A087WZG4 1122 aa15.42■□□□□ 0.06
PTPN7-217ENST00000495688 FOSBP53539 338 aa15.42■□□□□ 0.06
PTPN7-217ENST00000495688 CEBPZQ03701 1054 aaKnown RBP15.42■□□□□ 0.06
PTPN7-217ENST00000495688 SPTLC3Q9NUV7 552 aa15.42■□□□□ 0.06
PTPN7-217ENST00000495688 MRC1P22897 1456 aa15.42■□□□□ 0.06
PTPN7-217ENST00000495688 HSP90B1P14625 803 aaKnown RBP15.41■□□□□ 0.06
PTPN7-217ENST00000495688 KIAA1524Q8TCG1 905 aa15.41■□□□□ 0.06
PTPN7-217ENST00000495688 CABLES1Q8TDN4 633 aa15.41■□□□□ 0.06
PTPN7-217ENST00000495688 SCAND2PQ9GZW5 306 aaPredicted RBP15.41■□□□□ 0.06
PTPN7-217ENST00000495688 ALDH8A1Q9H2A2 487 aaPredicted RBP15.41■□□□□ 0.06
PTPN7-217ENST00000495688 ADAMTS7Q9UKP4 1686 aa15.41■□□□□ 0.06
PTPN7-217ENST00000495688 CAMTA1Q9Y6Y1 1673 aa15.41■□□□□ 0.06
PTPN7-217ENST00000495688 MEGF6O75095 1541 aa15.41■□□□□ 0.06
PTPN7-217ENST00000495688 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.41■□□□□ 0.06
PTPN7-217ENST00000495688 A0A0G2JLW4 131 aa15.41■□□□□ 0.06
PTPN7-217ENST00000495688 STOX1Q6ZVD7 989 aa15.41■□□□□ 0.06
PTPN7-217ENST00000495688 CBX8Q9HC52 389 aa15.41■□□□□ 0.06
PTPN7-217ENST00000495688 PTGS1P23219 599 aa15.4■□□□□ 0.06
PTPN7-217ENST00000495688 CYP27B1O15528 508 aa15.4■□□□□ 0.06
PTPN7-217ENST00000495688 SNRPA1P09661 255 aaKnown RBP15.4■□□□□ 0.06
PTPN7-217ENST00000495688 LMBR1LQ6UX01 489 aa15.4■□□□□ 0.06
PTPN7-217ENST00000495688 TTC5Q8N0Z6 440 aa15.4■□□□□ 0.06
PTPN7-217ENST00000495688 BICD2Q8TD16 824 aa15.4■□□□□ 0.06
PTPN7-217ENST00000495688 FTOQ9C0B1 505 aaKnown RBP eCLIP15.4■□□□□ 0.06
PTPN7-217ENST00000495688 TATP17735 454 aaPredicted RBP15.4■□□□□ 0.06
PTPN7-217ENST00000495688 SCRN1Q12765 414 aa15.4■□□□□ 0.06
PTPN7-217ENST00000495688 CHRNA2Q15822 529 aa15.4■□□□□ 0.06
PTPN7-217ENST00000495688 RABL6Q3YEC7 729 aaPredicted RBP15.4■□□□□ 0.06
PTPN7-217ENST00000495688 SCN11AQ9UI33 1791 aa15.39■□□□□ 0.05
PTPN7-217ENST00000495688 CSB-PGBD3P0DP91 1061 aa15.39■□□□□ 0.05
PTPN7-217ENST00000495688 RESTQ13127 1097 aa15.39■□□□□ 0.05
PTPN7-217ENST00000495688 MCMDC2Q4G0Z9 681 aa15.39■□□□□ 0.05
PTPN7-217ENST00000495688 NRBP1Q9UHY1 535 aa15.39■□□□□ 0.05
PTPN7-217ENST00000495688 H3BQV1 296 aa15.39■□□□□ 0.05
PTPN7-217ENST00000495688 TIMM10P62072 90 aa15.39■□□□□ 0.05
PTPN7-217ENST00000495688 KRT32Q14532 448 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms