RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 BCL2L13Q9BXK5 485 aa18.41■□□□□ 0.54
VARS-227ENST00000489979 PGAP2Q9UHJ9 254 aa18.41■□□□□ 0.54
VARS-227ENST00000489979 TSPYL4Q9UJ04 414 aa18.41■□□□□ 0.54
VARS-227ENST00000489979 ANKRD36CQ5JPF3 1778 aa18.4■□□□□ 0.54
VARS-227ENST00000489979 RAD17O75943 681 aa18.4■□□□□ 0.54
VARS-227ENST00000489979 HCLS1P14317 486 aaPredicted RBP18.4■□□□□ 0.54
VARS-227ENST00000489979 HIRAP54198 1017 aaPredicted RBP18.4■□□□□ 0.54
VARS-227ENST00000489979 KIAA2012Q0VF49 1180 aa18.4■□□□□ 0.54
VARS-227ENST00000489979 HHIPL1Q96JK4 782 aa18.4■□□□□ 0.54
VARS-227ENST00000489979 ZNF408Q9H9D4 720 aa18.4■□□□□ 0.54
VARS-227ENST00000489979 CA12O43570 354 aa18.39■□□□□ 0.53
VARS-227ENST00000489979 RGS19P49795 217 aa18.39■□□□□ 0.53
VARS-227ENST00000489979 TRPM4Q8TD43 1214 aa18.39■□□□□ 0.53
VARS-227ENST00000489979 ZC3H15Q8WU90 426 aaKnown RBP18.39■□□□□ 0.53
VARS-227ENST00000489979 CDHR2Q9BYE9 1310 aa18.39■□□□□ 0.53
VARS-227ENST00000489979 MAPK8IP3Q9UPT6 1336 aa18.39■□□□□ 0.53
VARS-227ENST00000489979 TAF1P21675 1872 aa18.39■□□□□ 0.53
VARS-227ENST00000489979 BRPF1P55201 1214 aaPredicted RBP18.38■□□□□ 0.53
VARS-227ENST00000489979 TNIP1Q15025 636 aa18.38■□□□□ 0.53
VARS-227ENST00000489979 MCOLN1Q9GZU1 580 aa18.38■□□□□ 0.53
VARS-227ENST00000489979 SHTN1A0MZ66 631 aa18.37■□□□□ 0.53
VARS-227ENST00000489979 YDJCA8MPS7 323 aa18.37■□□□□ 0.53
VARS-227ENST00000489979 HSP90AB3PQ58FF7 597 aa18.37■□□□□ 0.53
VARS-227ENST00000489979 DDX46Q7L014 1031 aaKnown RBP18.37■□□□□ 0.53
VARS-227ENST00000489979 CDC37L1Q7L3B6 337 aa18.37■□□□□ 0.53
VARS-227ENST00000489979 NLRP10Q86W26 655 aa18.37■□□□□ 0.53
VARS-227ENST00000489979 PNNQ9H307 717 aaKnown RBP18.37■□□□□ 0.53
VARS-227ENST00000489979 CNOT7Q9UIV1 285 aaKnown RBP18.37■□□□□ 0.53
VARS-227ENST00000489979 AIMP1Q12904 312 aaKnown RBP18.36■□□□□ 0.53
VARS-227ENST00000489979 GRAPQ13588 217 aa18.36■□□□□ 0.53
VARS-227ENST00000489979 COPS6Q7L5N1 327 aa18.36■□□□□ 0.53
VARS-227ENST00000489979 GRAPLQ8TC17 118 aaPredicted RBP18.36■□□□□ 0.53
VARS-227ENST00000489979 NECTIN2Q92692 538 aa18.36■□□□□ 0.53
VARS-227ENST00000489979 CFAP44Q96MT7 982 aa18.36■□□□□ 0.53
VARS-227ENST00000489979 TRMT112Q9UI30 125 aaKnown RBP18.36■□□□□ 0.53
VARS-227ENST00000489979 H7C1D1 291 aa18.35■□□□□ 0.53
VARS-227ENST00000489979 USP48Q86UV5 1035 aa18.35■□□□□ 0.53
VARS-227ENST00000489979 XAGE3Q8WTP9 111 aa18.35■□□□□ 0.53
VARS-227ENST00000489979 SH3TC1Q8TE82 1336 aa18.34■□□□□ 0.53
VARS-227ENST00000489979 RIPK4P57078 832 aa18.34■□□□□ 0.53
VARS-227ENST00000489979 TCIRG1Q13488 830 aa18.34■□□□□ 0.53
VARS-227ENST00000489979 MICALL2Q8IY33 904 aa18.34■□□□□ 0.53
VARS-227ENST00000489979 ZIC5Q96T25 663 aa18.34■□□□□ 0.53
VARS-227ENST00000489979 ZBTB12Q9Y330 459 aaPredicted RBP18.34■□□□□ 0.53
VARS-227ENST00000489979 DUOX1Q9NRD9 1551 aa18.34■□□□□ 0.53
VARS-227ENST00000489979 POLR2AP24928 1970 aaKnown RBP18.33■□□□□ 0.53
VARS-227ENST00000489979 HUNKP57058 714 aa18.33■□□□□ 0.52
VARS-227ENST00000489979 DGKZQ13574 1117 aa18.33■□□□□ 0.52
VARS-227ENST00000489979 DLK2Q6UY11 383 aa18.33■□□□□ 0.52
VARS-227ENST00000489979 ZNF428Q96B54 188 aa18.33■□□□□ 0.52
VARS-227ENST00000489979 NOGQ13253 232 aa18.32■□□□□ 0.52
VARS-227ENST00000489979 SAMD7Q7Z3H4 446 aa18.32■□□□□ 0.52
VARS-227ENST00000489979 TMC4Q7Z404 712 aa18.32■□□□□ 0.52
VARS-227ENST00000489979 BABAM1Q9NWV8 329 aa18.32■□□□□ 0.52
VARS-227ENST00000489979 LRRC37AA6NMS7 1700 aa18.32■□□□□ 0.52
VARS-227ENST00000489979 PSMD14O00487 310 aa18.31■□□□□ 0.52
VARS-227ENST00000489979 DPF2Q92785 391 aa18.31■□□□□ 0.52
VARS-227ENST00000489979 DBNDD1Q9H9R9 158 aa18.31■□□□□ 0.52
VARS-227ENST00000489979 DDX60Q8IY21 1712 aaKnown RBP18.3■□□□□ 0.52
VARS-227ENST00000489979 WASHC4Q2M389 1173 aa18.3■□□□□ 0.52
VARS-227ENST00000489979 RIMBP2O15034 1052 aa18.29■□□□□ 0.52
VARS-227ENST00000489979 EGFRP00533 1210 aa18.29■□□□□ 0.52
VARS-227ENST00000489979 TBC1D10BQ4KMP7 808 aaPredicted RBP18.29■□□□□ 0.52
VARS-227ENST00000489979 KRT26Q7Z3Y9 468 aa18.29■□□□□ 0.52
VARS-227ENST00000489979 CELF1Q92879 486 aaKnown RBP18.29■□□□□ 0.52
VARS-227ENST00000489979 NSFL1CQ9UNZ2 370 aaKnown RBP18.29■□□□□ 0.52
VARS-227ENST00000489979 TMPOP42166 694 aaKnown RBP18.28■□□□□ 0.52
VARS-227ENST00000489979 KRT24Q2M2I5 525 aa18.28■□□□□ 0.52
VARS-227ENST00000489979 RBM26Q5T8P6 1007 aaKnown RBP18.28■□□□□ 0.52
VARS-227ENST00000489979 RGMBQ6NW40 437 aa18.28■□□□□ 0.52
VARS-227ENST00000489979 GBA2Q9HCG7 927 aaPredicted RBP18.28■□□□□ 0.52
VARS-227ENST00000489979 FAM155AB1AL88 458 aaPredicted RBP18.27■□□□□ 0.52
VARS-227ENST00000489979 ADM5C9JUS6 153 aa18.27■□□□□ 0.52
VARS-227ENST00000489979 C6orf229H3BNL8 230 aa18.27■□□□□ 0.52
VARS-227ENST00000489979 LMOD3Q0VAK6 560 aa18.27■□□□□ 0.52
VARS-227ENST00000489979 KCNQ5Q9NR82 932 aa18.27■□□□□ 0.52
VARS-227ENST00000489979 CHPF2Q9P2E5 772 aa18.27■□□□□ 0.52
VARS-227ENST00000489979 POLLQ9UGP5 575 aa18.27■□□□□ 0.52
VARS-227ENST00000489979 GPSM2P81274 684 aa18.26■□□□□ 0.51
VARS-227ENST00000489979 SF3B3Q15393 1217 aaKnown RBP18.26■□□□□ 0.51
VARS-227ENST00000489979 DOK7Q18PE1 504 aa18.26■□□□□ 0.51
VARS-227ENST00000489979 C2orf69Q8N8R5 385 aa18.26■□□□□ 0.51
VARS-227ENST00000489979 DCPSQ96C86 337 aaKnown RBP18.26■□□□□ 0.51
VARS-227ENST00000489979 FAM89AQ96GI7 184 aa18.26■□□□□ 0.51
VARS-227ENST00000489979 COL4A1P02462 1669 aa18.25■□□□□ 0.51
VARS-227ENST00000489979 ECE2O60344 883 aa18.25■□□□□ 0.51
VARS-227ENST00000489979 RPS12P25398 132 aaKnown RBP18.25■□□□□ 0.51
VARS-227ENST00000489979 KIF23Q02241 960 aaPredicted RBP18.25■□□□□ 0.51
VARS-227ENST00000489979 PLBD2Q8NHP8 589 aa18.25■□□□□ 0.51
VARS-227ENST00000489979 ISCA1Q9BUE6 129 aa18.25■□□□□ 0.51
VARS-227ENST00000489979 RTL9Q8NET4 1388 aa18.25■□□□□ 0.51
VARS-227ENST00000489979 AKAP11Q9UKA4 1901 aa18.24■□□□□ 0.51
VARS-227ENST00000489979 ATP5J2-PTCD1G3V325 749 aa18.24■□□□□ 0.51
VARS-227ENST00000489979 ZNF157P51786 506 aaPredicted RBP18.24■□□□□ 0.51
VARS-227ENST00000489979 ANKRD13DQ6ZTN6 518 aa18.24■□□□□ 0.51
VARS-227ENST00000489979 CCDC102AQ96A19 550 aa18.24■□□□□ 0.51
VARS-227ENST00000489979 EYA3Q99504 573 aa18.24■□□□□ 0.51
VARS-227ENST00000489979 SAGE1Q9NXZ1 904 aa18.24■□□□□ 0.51
VARS-227ENST00000489979 LAS1LQ9Y4W2 734 aaKnown RBP18.24■□□□□ 0.51
VARS-227ENST00000489979 TNRC18O15417 2968 aaPredicted RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 121.6 ms