RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 CCDC152Q4G0S7 254 aa17.33■□□□□ 0.36
C9orf3-221ENST00000489562 EPHA10Q5JZY3 1008 aa17.33■□□□□ 0.36
C9orf3-221ENST00000489562 LMBR1LQ6UX01 489 aa17.33■□□□□ 0.36
C9orf3-221ENST00000489562 TTLL11Q8NHH1 800 aa17.33■□□□□ 0.36
C9orf3-221ENST00000489562 KLRG2A4D1S0 409 aaPredicted RBP17.32■□□□□ 0.36
C9orf3-221ENST00000489562 PTGER2P43116 358 aa17.32■□□□□ 0.36
C9orf3-221ENST00000489562 COL11A2P13942 1736 aaPredicted RBP17.32■□□□□ 0.36
C9orf3-221ENST00000489562 CRY2Q49AN0 593 aa17.31■□□□□ 0.36
C9orf3-221ENST00000489562 CHMP3Q9Y3E7 222 aa17.31■□□□□ 0.36
C9orf3-221ENST00000489562 PCDHB15Q9Y5E8 787 aa17.31■□□□□ 0.36
C9orf3-221ENST00000489562 SRGAP3O43295 1099 aa17.3■□□□□ 0.36
C9orf3-221ENST00000489562 CCDC24Q8N4L8 307 aa17.3■□□□□ 0.36
C9orf3-221ENST00000489562 SSH3Q8TE77 659 aa17.3■□□□□ 0.36
C9orf3-221ENST00000489562 SPEF2Q9C093 1822 aa17.3■□□□□ 0.36
C9orf3-221ENST00000489562 IFIT5Q13325 482 aaKnown RBP17.29■□□□□ 0.36
C9orf3-221ENST00000489562 HDAC1Q13547 482 aaPredicted RBP17.29■□□□□ 0.36
C9orf3-221ENST00000489562 POLA2Q14181 598 aa17.29■□□□□ 0.36
C9orf3-221ENST00000489562 CCDC57Q2TAC2 916 aa17.29■□□□□ 0.36
C9orf3-221ENST00000489562 FAM161AQ3B820 660 aa17.29■□□□□ 0.36
C9orf3-221ENST00000489562 RPGRQ92834 1020 aaKnown RBP17.29■□□□□ 0.36
C9orf3-221ENST00000489562 TAF1P21675 1872 aa17.29■□□□□ 0.36
C9orf3-221ENST00000489562 KIAA1551Q9HCM1 1747 aa17.28■□□□□ 0.36
C9orf3-221ENST00000489562 PNMA6EA0A0J9YXQ4 647 aa17.28■□□□□ 0.36
C9orf3-221ENST00000489562 ANKRD18BA2A2Z9 1011 aa17.28■□□□□ 0.36
C9orf3-221ENST00000489562 C3orf67Q6ZVT6 689 aa17.28■□□□□ 0.36
C9orf3-221ENST00000489562 DDX46Q7L014 1031 aaKnown RBP17.28■□□□□ 0.36
C9orf3-221ENST00000489562 CDC5LQ99459 802 aaKnown RBP17.28■□□□□ 0.36
C9orf3-221ENST00000489562 RWDD1Q9H446 243 aaPredicted RBP17.28■□□□□ 0.36
C9orf3-221ENST00000489562 GREM2Q9H772 168 aa17.28■□□□□ 0.36
C9orf3-221ENST00000489562 PPP4R2Q9NY27 417 aa17.28■□□□□ 0.36
C9orf3-221ENST00000489562 CD2APQ9Y5K6 639 aa17.28■□□□□ 0.36
C9orf3-221ENST00000489562 CACNA1SQ13698 1873 aa17.28■□□□□ 0.36
C9orf3-221ENST00000489562 LRP5O75197 1615 aa17.28■□□□□ 0.36
C9orf3-221ENST00000489562 H0YIN7 160 aa17.27■□□□□ 0.36
C9orf3-221ENST00000489562 NPR1P16066 1061 aa17.27■□□□□ 0.36
C9orf3-221ENST00000489562 ITGA6P23229 1130 aa17.27■□□□□ 0.36
C9orf3-221ENST00000489562 HOXA10P31260 410 aaPredicted RBP17.27■□□□□ 0.36
C9orf3-221ENST00000489562 SIRT2Q8IXJ6 389 aa17.27■□□□□ 0.36
C9orf3-221ENST00000489562 RBM17Q96I25 401 aaKnown RBP17.27■□□□□ 0.36
C9orf3-221ENST00000489562 FBXO3Q9UK99 471 aa17.27■□□□□ 0.36
C9orf3-221ENST00000489562 SRGNP10124 158 aa17.26■□□□□ 0.35
C9orf3-221ENST00000489562 TGFB2P61812 414 aa17.26■□□□□ 0.35
C9orf3-221ENST00000489562 TAF7LQ5H9L4 462 aa17.26■□□□□ 0.35
C9orf3-221ENST00000489562 MASTLQ96GX5 879 aa17.26■□□□□ 0.35
C9orf3-221ENST00000489562 CCDC85AQ96PX6 553 aaPredicted RBP17.26■□□□□ 0.35
C9orf3-221ENST00000489562 CRAMP1Q96RY5 1269 aa17.26■□□□□ 0.35
C9orf3-221ENST00000489562 BRCA1P38398 1863 aaKnown RBP17.26■□□□□ 0.35
C9orf3-221ENST00000489562 RFX5P48382 616 aaPredicted RBP17.25■□□□□ 0.35
C9orf3-221ENST00000489562 STYK1Q6J9G0 422 aa17.25■□□□□ 0.35
C9orf3-221ENST00000489562 C2CD5Q86YS7 1000 aa17.25■□□□□ 0.35
C9orf3-221ENST00000489562 COPRSQ9NQ92 184 aa17.25■□□□□ 0.35
C9orf3-221ENST00000489562 ALDH1B1P30837 517 aa17.24■□□□□ 0.35
C9orf3-221ENST00000489562 IGHMBP2P38935 993 aaKnown RBP17.24■□□□□ 0.35
C9orf3-221ENST00000489562 GRAPQ13588 217 aa17.24■□□□□ 0.35
C9orf3-221ENST00000489562 HSP90AB4PQ58FF6 505 aa17.24■□□□□ 0.35
C9orf3-221ENST00000489562 ANKRD18AQ8IVF6 992 aa17.24■□□□□ 0.35
C9orf3-221ENST00000489562 GRAPLQ8TC17 118 aaPredicted RBP17.24■□□□□ 0.35
C9orf3-221ENST00000489562 CCDC136Q96JN2 1154 aa17.24■□□□□ 0.35
C9orf3-221ENST00000489562 NOP58Q9Y2X3 529 aaKnown RBP17.24■□□□□ 0.35
C9orf3-221ENST00000489562 PTPN12Q05209 780 aaKnown RBP17.23■□□□□ 0.35
C9orf3-221ENST00000489562 TMC4Q7Z404 712 aa17.23■□□□□ 0.35
C9orf3-221ENST00000489562 CNKSR1Q969H4 720 aa17.23■□□□□ 0.35
C9orf3-221ENST00000489562 GCC1Q96CN9 775 aa17.23■□□□□ 0.35
C9orf3-221ENST00000489562 A0A1B0GUL6 1792 aa17.23■□□□□ 0.35
C9orf3-221ENST00000489562 LRRC37AA6NMS7 1700 aa17.22■□□□□ 0.35
C9orf3-221ENST00000489562 BBOX1O75936 387 aa17.22■□□□□ 0.35
C9orf3-221ENST00000489562 CIAO1O76071 339 aa17.22■□□□□ 0.35
C9orf3-221ENST00000489562 RPS8P62241 208 aaKnown RBP17.22■□□□□ 0.35
C9orf3-221ENST00000489562 MPHOSPH8Q99549 860 aa17.22■□□□□ 0.35
C9orf3-221ENST00000489562 DCTPP1Q9H773 170 aa17.22■□□□□ 0.35
C9orf3-221ENST00000489562 SEC31BQ9NQW1 1179 aa17.22■□□□□ 0.35
C9orf3-221ENST00000489562 PPP1R1BQ9UD71 204 aaPredicted RBP17.22■□□□□ 0.35
C9orf3-221ENST00000489562 GTF3C3Q9Y5Q9 886 aa17.22■□□□□ 0.35
C9orf3-221ENST00000489562 SURF6O75683 361 aaKnown RBP17.21■□□□□ 0.35
C9orf3-221ENST00000489562 G3BP1Q13283 466 aaKnown RBP eCLIP17.21■□□□□ 0.35
C9orf3-221ENST00000489562 LDHAL6AQ6ZMR3 332 aa17.21■□□□□ 0.35
C9orf3-221ENST00000489562 ERC1Q8IUD2 1116 aa17.21■□□□□ 0.35
C9orf3-221ENST00000489562 SLX4Q8IY92 1834 aa17.21■□□□□ 0.35
C9orf3-221ENST00000489562 EYA2O00167 538 aa17.2■□□□□ 0.34
C9orf3-221ENST00000489562 RAB11FIP3O75154 756 aa17.2■□□□□ 0.34
C9orf3-221ENST00000489562 CHRNA5P30532 468 aa17.2■□□□□ 0.34
C9orf3-221ENST00000489562 KLHL34Q8N239 644 aa17.2■□□□□ 0.34
C9orf3-221ENST00000489562 CELF1Q92879 486 aaKnown RBP17.2■□□□□ 0.34
C9orf3-221ENST00000489562 ZNF622Q969S3 477 aaKnown RBP eCLIP17.2■□□□□ 0.34
C9orf3-221ENST00000489562 ZNF594Q96JF6 807 aaPredicted RBP17.2■□□□□ 0.34
C9orf3-221ENST00000489562 BSDC1Q9NW68 430 aaPredicted RBP17.2■□□□□ 0.34
C9orf3-221ENST00000489562 PA2G4Q9UQ80 394 aaKnown RBP17.2■□□□□ 0.34
C9orf3-221ENST00000489562 COL4A1P02462 1669 aa17.2■□□□□ 0.34
C9orf3-221ENST00000489562 IGHDP01880 384 aa17.19■□□□□ 0.34
C9orf3-221ENST00000489562 DPEP1P16444 411 aa17.19■□□□□ 0.34
C9orf3-221ENST00000489562 IL15P40933 162 aaPredicted RBP17.19■□□□□ 0.34
C9orf3-221ENST00000489562 OS9Q13438 667 aaPredicted RBP17.19■□□□□ 0.34
C9orf3-221ENST00000489562 CENPQQ7L2Z9 268 aaPredicted RBP17.19■□□□□ 0.34
C9orf3-221ENST00000489562 SMC5Q8IY18 1101 aa17.19■□□□□ 0.34
C9orf3-221ENST00000489562 KLHDC4Q8TBB5 520 aa17.19■□□□□ 0.34
C9orf3-221ENST00000489562 CNNM1Q9NRU3 951 aa17.19■□□□□ 0.34
C9orf3-221ENST00000489562 ARFGEF1Q9Y6D6 1849 aa17.19■□□□□ 0.34
C9orf3-221ENST00000489562 MROH5Q6ZUA9 1318 aa17.19■□□□□ 0.34
C9orf3-221ENST00000489562 TTLL6Q8N841 843 aa17.18■□□□□ 0.34
C9orf3-221ENST00000489562 SIL1Q9H173 461 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms