RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 USP50Q70EL3 339 aaPredicted RBP23.98■■□□□ 1.43
HDAC6-231ENST00000488905 MPNDQ8N594 471 aa23.97■■□□□ 1.43
HDAC6-231ENST00000488905 ZNF428Q96B54 188 aa23.97■■□□□ 1.43
HDAC6-231ENST00000488905 PRKRIP1Q9H875 184 aaPredicted RBP23.97■■□□□ 1.43
HDAC6-231ENST00000488905 ZNRF3Q9ULT6 936 aa23.97■■□□□ 1.43
HDAC6-231ENST00000488905 COL4A1P02462 1669 aa23.96■■□□□ 1.43
HDAC6-231ENST00000488905 FOXN1O15353 648 aa23.96■■□□□ 1.43
HDAC6-231ENST00000488905 CAPN15O75808 1086 aa23.96■■□□□ 1.43
HDAC6-231ENST00000488905 KIAA2012Q0VF49 1180 aa23.96■■□□□ 1.43
HDAC6-231ENST00000488905 DUSP27Q5VZP5 1158 aa23.96■■□□□ 1.43
HDAC6-231ENST00000488905 ANKRD13DQ6ZTN6 518 aa23.96■■□□□ 1.43
HDAC6-231ENST00000488905 ISCA1Q9BUE6 129 aa23.96■■□□□ 1.43
HDAC6-231ENST00000488905 MBIPQ9NS73 344 aa23.96■■□□□ 1.43
HDAC6-231ENST00000488905 GPRC5DQ9NZD1 345 aa23.96■■□□□ 1.43
HDAC6-231ENST00000488905 CXCL9Q07325 125 aa23.95■■□□□ 1.42
HDAC6-231ENST00000488905 TMC4Q7Z404 712 aa23.95■■□□□ 1.42
HDAC6-231ENST00000488905 HYPKQ9NX55 129 aa23.95■■□□□ 1.42
HDAC6-231ENST00000488905 ABT1Q9ULW3 272 aaKnown RBP23.95■■□□□ 1.42
HDAC6-231ENST00000488905 DEFB115Q30KQ5 88 aa23.94■■□□□ 1.42
HDAC6-231ENST00000488905 ADARB2Q9NS39 739 aaKnown RBP23.94■■□□□ 1.42
HDAC6-231ENST00000488905 CDHR2Q9BYE9 1310 aa23.93■■□□□ 1.42
HDAC6-231ENST00000488905 ATP5J2-PTCD1G3V325 749 aa23.93■■□□□ 1.42
HDAC6-231ENST00000488905 AIDAQ96BJ3 306 aa23.93■■□□□ 1.42
HDAC6-231ENST00000488905 FAM89AQ96GI7 184 aa23.93■■□□□ 1.42
HDAC6-231ENST00000488905 ZNF853P0CG23 659 aa23.92■■□□□ 1.42
HDAC6-231ENST00000488905 GMPSP49915 693 aaPredicted RBP23.92■■□□□ 1.42
HDAC6-231ENST00000488905 CIAPIN1Q6FI81 312 aa23.92■■□□□ 1.42
HDAC6-231ENST00000488905 FMR1Q06787 632 aaKnown RBP eCLIP23.91■■□□□ 1.42
HDAC6-231ENST00000488905 IFT57Q9NWB7 429 aa23.91■■□□□ 1.42
HDAC6-231ENST00000488905 WDR33Q9C0J8 1336 aaKnown RBP23.9■■□□□ 1.42
HDAC6-231ENST00000488905 CTCFP49711 727 aaPredicted RBP23.9■■□□□ 1.42
HDAC6-231ENST00000488905 SF3B3Q15393 1217 aaKnown RBP23.9■■□□□ 1.42
HDAC6-231ENST00000488905 WBP1LQ9NX94 342 aa23.9■■□□□ 1.42
HDAC6-231ENST00000488905 TRAF5O00463 557 aa23.89■■□□□ 1.41
HDAC6-231ENST00000488905 APAF1O14727 1248 aa23.89■■□□□ 1.41
HDAC6-231ENST00000488905 RAD17O75943 681 aa23.89■■□□□ 1.41
HDAC6-231ENST00000488905 TNIP1Q15025 636 aa23.89■■□□□ 1.41
HDAC6-231ENST00000488905 CELF1Q92879 486 aaKnown RBP23.89■■□□□ 1.41
HDAC6-231ENST00000488905 PRDM10Q9NQV6 1147 aa23.89■■□□□ 1.41
HDAC6-231ENST00000488905 YDJCA8MPS7 323 aa23.88■■□□□ 1.41
HDAC6-231ENST00000488905 GNAI1P63096 354 aa23.88■■□□□ 1.41
HDAC6-231ENST00000488905 CALD1Q05682 793 aaKnown RBP23.88■■□□□ 1.41
HDAC6-231ENST00000488905 GOLGA2Q08379 1002 aa23.88■■□□□ 1.41
HDAC6-231ENST00000488905 TRIM28Q13263 835 aaKnown RBP23.88■■□□□ 1.41
HDAC6-231ENST00000488905 RTL5Q5HYW3 569 aaPredicted RBP23.88■■□□□ 1.41
HDAC6-231ENST00000488905 BCL2L13Q9BXK5 485 aa23.88■■□□□ 1.41
HDAC6-231ENST00000488905 MYH3P11055 1940 aa23.87■■□□□ 1.41
HDAC6-231ENST00000488905 SCN9AQ15858 1988 aa23.87■■□□□ 1.41
HDAC6-231ENST00000488905 IRS4O14654 1257 aaPredicted RBP23.86■■□□□ 1.41
HDAC6-231ENST00000488905 CST9Q5W186 159 aa23.86■■□□□ 1.41
HDAC6-231ENST00000488905 RIC3Q7Z5B4 369 aa23.86■■□□□ 1.41
HDAC6-231ENST00000488905 PSME4Q14997 1843 aa23.85■■□□□ 1.41
HDAC6-231ENST00000488905 MAP2K1Q02750 393 aaPredicted RBP23.85■■□□□ 1.41
HDAC6-231ENST00000488905 PAXIP1Q6ZW49 1069 aaPredicted RBP23.85■■□□□ 1.41
HDAC6-231ENST00000488905 PHAXQ9H814 394 aaKnown RBP23.85■■□□□ 1.41
HDAC6-231ENST00000488905 NSFL1CQ9UNZ2 370 aaKnown RBP23.85■■□□□ 1.41
HDAC6-231ENST00000488905 POLR2AP24928 1970 aaKnown RBP23.85■■□□□ 1.41
HDAC6-231ENST00000488905 WASHC4Q2M389 1173 aa23.84■■□□□ 1.41
HDAC6-231ENST00000488905 ZBTB38Q8NAP3 1195 aaPredicted RBP23.84■■□□□ 1.41
HDAC6-231ENST00000488905 TRPM4Q8TD43 1214 aa23.84■■□□□ 1.41
HDAC6-231ENST00000488905 CAPNS2Q96L46 248 aa23.84■■□□□ 1.41
HDAC6-231ENST00000488905 TLL2Q9Y6L7 1015 aa23.84■■□□□ 1.41
HDAC6-231ENST00000488905 SPEF2Q9C093 1822 aa23.83■■□□□ 1.41
HDAC6-231ENST00000488905 ELL2O00472 640 aaPredicted RBP23.83■■□□□ 1.41
HDAC6-231ENST00000488905 ECE1P42892 770 aa23.83■■□□□ 1.41
HDAC6-231ENST00000488905 GLIS2Q9BZE0 524 aaPredicted RBP23.83■■□□□ 1.41
HDAC6-231ENST00000488905 DBNDD1Q9H9R9 158 aa23.83■■□□□ 1.41
HDAC6-231ENST00000488905 PGAP2Q9UHJ9 254 aa23.83■■□□□ 1.41
HDAC6-231ENST00000488905 LBX1P52954 281 aa23.82■■□□□ 1.4
HDAC6-231ENST00000488905 HIRAP54198 1017 aaPredicted RBP23.82■■□□□ 1.4
HDAC6-231ENST00000488905 GPSM2P81274 684 aa23.82■■□□□ 1.4
HDAC6-231ENST00000488905 CYP4F22Q6NT55 531 aa23.82■■□□□ 1.4
HDAC6-231ENST00000488905 ZC3H15Q8WU90 426 aaKnown RBP23.82■■□□□ 1.4
HDAC6-231ENST00000488905 MYD88Q99836 296 aa23.82■■□□□ 1.4
HDAC6-231ENST00000488905 POLLQ9UGP5 575 aa23.82■■□□□ 1.4
HDAC6-231ENST00000488905 CNOT7Q9UIV1 285 aaKnown RBP23.82■■□□□ 1.4
HDAC6-231ENST00000488905 SHTN1A0MZ66 631 aa23.81■■□□□ 1.4
HDAC6-231ENST00000488905 C6orf229H3BNL8 230 aa23.81■■□□□ 1.4
HDAC6-231ENST00000488905 CELF2O95319 508 aaKnown RBP23.81■■□□□ 1.4
HDAC6-231ENST00000488905 HSPA8P11142 646 aaKnown RBP23.81■■□□□ 1.4
HDAC6-231ENST00000488905 MICALL2Q8IY33 904 aa23.81■■□□□ 1.4
HDAC6-231ENST00000488905 H7C1D1 291 aa23.8■■□□□ 1.4
HDAC6-231ENST00000488905 PSMD14O00487 310 aa23.8■■□□□ 1.4
HDAC6-231ENST00000488905 RIMBP2O15034 1052 aa23.8■■□□□ 1.4
HDAC6-231ENST00000488905 HSP90B1P14625 803 aaKnown RBP23.8■■□□□ 1.4
HDAC6-231ENST00000488905 RPS8P62241 208 aaKnown RBP23.8■■□□□ 1.4
HDAC6-231ENST00000488905 GRM1Q13255 1194 aa23.8■■□□□ 1.4
HDAC6-231ENST00000488905 C8orf58Q8NAV2 365 aa23.8■■□□□ 1.4
HDAC6-231ENST00000488905 CCDC191Q8NCU4 936 aa23.8■■□□□ 1.4
HDAC6-231ENST00000488905 EYA3Q99504 573 aa23.8■■□□□ 1.4
HDAC6-231ENST00000488905 ZBTB12Q9Y330 459 aaPredicted RBP23.8■■□□□ 1.4
HDAC6-231ENST00000488905 ECE2O60344 883 aa23.79■■□□□ 1.4
HDAC6-231ENST00000488905 SAPCD2Q86UD0 394 aa23.79■■□□□ 1.4
HDAC6-231ENST00000488905 DPF2Q92785 391 aa23.79■■□□□ 1.4
HDAC6-231ENST00000488905 RTL9Q8NET4 1388 aa23.78■■□□□ 1.4
HDAC6-231ENST00000488905 PCCAP05165 728 aaPredicted RBP23.78■■□□□ 1.4
HDAC6-231ENST00000488905 TBC1D16Q8TBP0 767 aa23.78■■□□□ 1.4
HDAC6-231ENST00000488905 GPR101Q96P66 508 aaPredicted RBP23.78■■□□□ 1.4
HDAC6-231ENST00000488905 SEC31BQ9NQW1 1179 aa23.78■■□□□ 1.4
HDAC6-231ENST00000488905 CWC25Q9NXE8 425 aaPredicted RBP23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms