RNA–Protein interactions for RNA: ENST00000486235.5

TMEM39A-209, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-209ENST00000486235 TIMELESSQ9UNS1 1208 aa9.62□□□□□ -0.87
TMEM39A-209ENST00000486235 USP32Q8NFA0 1604 aa9.62□□□□□ -0.87
TMEM39A-209ENST00000486235 TECPR2O15040 1411 aa9.62□□□□□ -0.87
TMEM39A-209ENST00000486235 ABCC11Q96J66 1382 aa9.62□□□□□ -0.87
TMEM39A-209ENST00000486235 EP400Q96L91 3159 aa9.61□□□□□ -0.87
TMEM39A-209ENST00000486235 BRWD3Q6RI45 1802 aa9.61□□□□□ -0.87
TMEM39A-209ENST00000486235 CELA2BP08218 269 aaPredicted RBP9.61□□□□□ -0.87
TMEM39A-209ENST00000486235 FBXO45P0C2W1 286 aa9.61□□□□□ -0.87
TMEM39A-209ENST00000486235 KRT27Q7Z3Y8 459 aa9.61□□□□□ -0.87
TMEM39A-209ENST00000486235 ARXQ96QS3 562 aa9.61□□□□□ -0.87
TMEM39A-209ENST00000486235 TNS3Q68CZ2 1445 aa9.61□□□□□ -0.87
TMEM39A-209ENST00000486235 FMN2Q9NZ56 1722 aa9.6□□□□□ -0.87
TMEM39A-209ENST00000486235 A0A1W2PRU2 124 aa9.6□□□□□ -0.87
TMEM39A-209ENST00000486235 ZBBXA8MT70 800 aa9.6□□□□□ -0.87
TMEM39A-209ENST00000486235 POU4F2Q12837 409 aa9.6□□□□□ -0.87
TMEM39A-209ENST00000486235 DBN1Q16643 649 aa9.6□□□□□ -0.87
TMEM39A-209ENST00000486235 ZNF837Q96EG3 531 aaPredicted RBP9.6□□□□□ -0.87
TMEM39A-209ENST00000486235 PCMTD1Q96MG8 357 aaPredicted RBP9.6□□□□□ -0.87
TMEM39A-209ENST00000486235 KIF1AQ12756 1690 aa9.6□□□□□ -0.87
TMEM39A-209ENST00000486235 YTHDC2Q9H6S0 1430 aaKnown RBP9.59□□□□□ -0.87
TMEM39A-209ENST00000486235 BAG6P46379 1132 aa9.59□□□□□ -0.87
TMEM39A-209ENST00000486235 PSME1Q06323 249 aa9.59□□□□□ -0.87
TMEM39A-209ENST00000486235 SAFB2Q14151 953 aaKnown RBP eCLIP9.59□□□□□ -0.87
TMEM39A-209ENST00000486235 SCARF2Q96GP6 870 aaPredicted RBP9.59□□□□□ -0.87
TMEM39A-209ENST00000486235 GAS2L1Q99501 681 aaPredicted RBP9.59□□□□□ -0.87
TMEM39A-209ENST00000486235 ANKRD30BQ9BXX2 1392 aa9.59□□□□□ -0.87
TMEM39A-209ENST00000486235 SPATA31E1Q6ZUB1 1445 aa9.58□□□□□ -0.88
TMEM39A-209ENST00000486235 FAM83GA6ND36 823 aa9.58□□□□□ -0.88
TMEM39A-209ENST00000486235 TMEM259Q4ZIN3 620 aa9.58□□□□□ -0.88
TMEM39A-209ENST00000486235 SLC27A3Q5K4L6 730 aa9.58□□□□□ -0.88
TMEM39A-209ENST00000486235 TRIM22Q8IYM9 498 aa9.58□□□□□ -0.88
TMEM39A-209ENST00000486235 GTPBP3Q969Y2 492 aaKnown RBP9.58□□□□□ -0.88
TMEM39A-209ENST00000486235 DNMT3AQ9Y6K1 912 aaPredicted RBP9.58□□□□□ -0.88
TMEM39A-209ENST00000486235 PLCH1Q4KWH8 1693 aa9.58□□□□□ -0.88
TMEM39A-209ENST00000486235 PIK3C2GO75747 1445 aa9.57□□□□□ -0.88
TMEM39A-209ENST00000486235 LRP5O75197 1615 aa9.57□□□□□ -0.88
TMEM39A-209ENST00000486235 KNDC1Q76NI1 1749 aa9.57□□□□□ -0.88
TMEM39A-209ENST00000486235 FAM182BQ5T319 152 aa9.57□□□□□ -0.88
TMEM39A-209ENST00000486235 PMFBP1Q8TBY8 1022 aa9.57□□□□□ -0.88
TMEM39A-209ENST00000486235 NLRP3Q96P20 1036 aa9.57□□□□□ -0.88
TMEM39A-209ENST00000486235 GTF3C3Q9Y5Q9 886 aa9.57□□□□□ -0.88
TMEM39A-209ENST00000486235 SBNO1A3KN83 1393 aa9.57□□□□□ -0.88
TMEM39A-209ENST00000486235 NRXN1Q9ULB1 1477 aa9.56□□□□□ -0.88
TMEM39A-209ENST00000486235 ARHGEF10O15013 1369 aa9.56□□□□□ -0.88
TMEM39A-209ENST00000486235 SCTRP47872 440 aa9.56□□□□□ -0.88
TMEM39A-209ENST00000486235 CFAP70Q5T0N1 1121 aa9.56□□□□□ -0.88
TMEM39A-209ENST00000486235 CC2D2BQ6DHV5 1058 aa9.56□□□□□ -0.88
TMEM39A-209ENST00000486235 KANK3Q6NY19 840 aa9.56□□□□□ -0.88
TMEM39A-209ENST00000486235 FOXR1Q6PIV2 292 aa9.56□□□□□ -0.88
TMEM39A-209ENST00000486235 IL27Q8NEV9 243 aa9.56□□□□□ -0.88
TMEM39A-209ENST00000486235 PRAM1Q96QH2 718 aa9.56□□□□□ -0.88
TMEM39A-209ENST00000486235 MBIPQ9NS73 344 aa9.56□□□□□ -0.88
TMEM39A-209ENST00000486235 BTG4Q9NY30 223 aa9.56□□□□□ -0.88
TMEM39A-209ENST00000486235 RGPD8O14715 1765 aaPredicted RBP9.55□□□□□ -0.88
TMEM39A-209ENST00000486235 R3HDM1Q15032 1099 aaKnown RBP9.55□□□□□ -0.88
TMEM39A-209ENST00000486235 MPHOSPH9Q99550 1183 aa9.55□□□□□ -0.88
TMEM39A-209ENST00000486235 ABCA3Q99758 1704 aa9.55□□□□□ -0.88
TMEM39A-209ENST00000486235 IFT172Q9UG01 1749 aa9.55□□□□□ -0.88
TMEM39A-209ENST00000486235 NWD2Q9ULI1 1742 aa9.55□□□□□ -0.88
TMEM39A-209ENST00000486235 CNTNAP5Q8WYK1 1306 aa9.55□□□□□ -0.88
TMEM39A-209ENST00000486235 DHX57Q6P158 1386 aaKnown RBP9.54□□□□□ -0.88
TMEM39A-209ENST00000486235 GPC1P35052 558 aa9.54□□□□□ -0.88
TMEM39A-209ENST00000486235 ERVK-9P63128 1117 aa9.54□□□□□ -0.88
TMEM39A-209ENST00000486235 SIRT1Q96EB6 747 aa9.54□□□□□ -0.88
TMEM39A-209ENST00000486235 C14orf93Q9H972 538 aaKnown RBP9.54□□□□□ -0.88
TMEM39A-209ENST00000486235 ENAMQ9NRM1 1142 aa9.54□□□□□ -0.88
TMEM39A-209ENST00000486235 POGKQ9P215 609 aa9.54□□□□□ -0.88
TMEM39A-209ENST00000486235 PCDHB11Q9Y5F2 797 aa9.54□□□□□ -0.88
TMEM39A-209ENST00000486235 NEDD1Q8NHV4 660 aa9.53□□□□□ -0.88
TMEM39A-209ENST00000486235 HIRIP3Q9BW71 556 aaPredicted RBP9.53□□□□□ -0.88
TMEM39A-209ENST00000486235 DYRK1BQ9Y463 629 aa9.53□□□□□ -0.88
TMEM39A-209ENST00000486235 EZH2Q15910 746 aaKnown RBP9.52□□□□□ -0.89
TMEM39A-209ENST00000486235 RNF20Q5VTR2 975 aa9.52□□□□□ -0.89
TMEM39A-209ENST00000486235 NBPF10Q6P3W6 841 aaKnown RBP9.52□□□□□ -0.89
TMEM39A-209ENST00000486235 NRAPQ86VF7 1730 aa9.52□□□□□ -0.89
TMEM39A-209ENST00000486235 NBPF15Q8N660 670 aa9.52□□□□□ -0.89
TMEM39A-209ENST00000486235 GMCL1Q96IK5 515 aa9.52□□□□□ -0.89
TMEM39A-209ENST00000486235 GRIP2Q9C0E4 1043 aa9.52□□□□□ -0.89
TMEM39A-209ENST00000486235 ARHGEF10LQ9HCE6 1279 aa9.52□□□□□ -0.89
TMEM39A-209ENST00000486235 RAB6BQ9NRW1 208 aa9.52□□□□□ -0.89
TMEM39A-209ENST00000486235 GPRASP1Q5JY77 1395 aa9.51□□□□□ -0.89
TMEM39A-209ENST00000486235 ANKARQ7Z5J8 1434 aa9.51□□□□□ -0.89
TMEM39A-209ENST00000486235 ACDQ96AP0 544 aa9.51□□□□□ -0.89
TMEM39A-209ENST00000486235 GOPCQ9HD26 462 aa9.51□□□□□ -0.89
TMEM39A-209ENST00000486235 SPATA31A5Q5VU36 1347 aa9.51□□□□□ -0.89
TMEM39A-209ENST00000486235 SPATA31A7Q8IWB4 1347 aa9.51□□□□□ -0.89
TMEM39A-209ENST00000486235 H7C1W4 665 aa9.5□□□□□ -0.89
TMEM39A-209ENST00000486235 IGHA1P01876 353 aa9.5□□□□□ -0.89
TMEM39A-209ENST00000486235 BCRP11274 1271 aa9.5□□□□□ -0.89
TMEM39A-209ENST00000486235 NR1H3Q13133 447 aa9.5□□□□□ -0.89
TMEM39A-209ENST00000486235 CLN3Q13286 438 aa9.5□□□□□ -0.89
TMEM39A-209ENST00000486235 NEUROD2Q15784 382 aa9.5□□□□□ -0.89
TMEM39A-209ENST00000486235 CYP2U1Q7Z449 544 aa9.5□□□□□ -0.89
TMEM39A-209ENST00000486235 TRERF1Q96PN7 1200 aa9.5□□□□□ -0.89
TMEM39A-209ENST00000486235 OSBPL3Q9H4L5 887 aa9.5□□□□□ -0.89
TMEM39A-209ENST00000486235 TIMMDC1Q9NPL8 285 aa9.5□□□□□ -0.89
TMEM39A-209ENST00000486235 PRDM11Q9NQV5 511 aa9.5□□□□□ -0.89
TMEM39A-209ENST00000486235 TRAK1Q9UPV9 953 aa9.5□□□□□ -0.89
TMEM39A-209ENST00000486235 PRR36Q9H6K5 1346 aa9.5□□□□□ -0.89
TMEM39A-209ENST00000486235 ACIN1Q9UKV3 1341 aaKnown RBP9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms