RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 BRF1Q92994 677 aa12.86□□□□□ -0.35
HDAC6-228ENST00000486227 NIP7Q9Y221 180 aaKnown RBP eCLIP12.86□□□□□ -0.35
HDAC6-228ENST00000486227 A1BGP04217 495 aa12.85□□□□□ -0.35
HDAC6-228ENST00000486227 POLR3DP05423 398 aaPredicted RBP12.85□□□□□ -0.35
HDAC6-228ENST00000486227 LRSAM1Q6UWE0 723 aa12.85□□□□□ -0.35
HDAC6-228ENST00000486227 RTCBQ9Y3I0 505 aaKnown RBP12.85□□□□□ -0.35
HDAC6-228ENST00000486227 CDC42BPBQ9Y5S2 1711 aa12.85□□□□□ -0.35
HDAC6-228ENST00000486227 POLD1P28340 1107 aa12.85□□□□□ -0.35
HDAC6-228ENST00000486227 TERF1P54274 439 aa12.85□□□□□ -0.35
HDAC6-228ENST00000486227 MAP3K11Q16584 847 aa12.85□□□□□ -0.35
HDAC6-228ENST00000486227 CCDC183Q5T5S1 534 aa12.85□□□□□ -0.35
HDAC6-228ENST00000486227 WASF1Q92558 559 aa12.85□□□□□ -0.35
HDAC6-228ENST00000486227 NOL7Q9UMY1 257 aaKnown RBP12.85□□□□□ -0.35
HDAC6-228ENST00000486227 PDE4CQ08493 712 aa12.84□□□□□ -0.35
HDAC6-228ENST00000486227 HELBQ8NG08 1087 aaPredicted RBP12.84□□□□□ -0.35
HDAC6-228ENST00000486227 NLRP3Q96P20 1036 aa12.84□□□□□ -0.35
HDAC6-228ENST00000486227 METTL22Q9BUU2 404 aaPredicted RBP12.84□□□□□ -0.35
HDAC6-228ENST00000486227 USP26Q9BXU7 913 aa12.84□□□□□ -0.35
HDAC6-228ENST00000486227 MKNK2Q9HBH9 465 aa12.84□□□□□ -0.35
HDAC6-228ENST00000486227 MCMDC2Q4G0Z9 681 aa12.84□□□□□ -0.35
HDAC6-228ENST00000486227 USP16Q9Y5T5 823 aa12.84□□□□□ -0.35
HDAC6-228ENST00000486227 ATP7BP35670 1465 aa12.84□□□□□ -0.35
HDAC6-228ENST00000486227 NLRP1Q9C000 1473 aa12.84□□□□□ -0.35
HDAC6-228ENST00000486227 UVSSAQ2YD98 709 aa12.84□□□□□ -0.35
HDAC6-228ENST00000486227 SLC12A7Q9Y666 1083 aa12.84□□□□□ -0.35
HDAC6-228ENST00000486227 ABCC4O15439 1325 aa12.84□□□□□ -0.35
HDAC6-228ENST00000486227 UQCRFS1P1P0C7P4 283 aa12.84□□□□□ -0.35
HDAC6-228ENST00000486227 CNKSR2Q8WXI2 1034 aa12.84□□□□□ -0.35
HDAC6-228ENST00000486227 FAM89AQ96GI7 184 aa12.84□□□□□ -0.35
HDAC6-228ENST00000486227 CDK5RAP3Q96JB5 506 aa12.83□□□□□ -0.35
HDAC6-228ENST00000486227 UNC13BO14795 1591 aa12.83□□□□□ -0.36
HDAC6-228ENST00000486227 IRS4O14654 1257 aaPredicted RBP12.83□□□□□ -0.36
HDAC6-228ENST00000486227 BRPF1P55201 1214 aaPredicted RBP12.83□□□□□ -0.36
HDAC6-228ENST00000486227 USP25Q9UHP3 1055 aa12.83□□□□□ -0.36
HDAC6-228ENST00000486227 BCORL1Q5H9F3 1711 aa12.83□□□□□ -0.36
HDAC6-228ENST00000486227 LDHCP07864 332 aa12.83□□□□□ -0.36
HDAC6-228ENST00000486227 TTLL12Q14166 644 aaPredicted RBP12.83□□□□□ -0.36
HDAC6-228ENST00000486227 PPP4R3BQ5MIZ7 849 aa12.83□□□□□ -0.36
HDAC6-228ENST00000486227 IQCA1Q86XH1 822 aa12.83□□□□□ -0.36
HDAC6-228ENST00000486227 PLBD2Q8NHP8 589 aa12.83□□□□□ -0.36
HDAC6-228ENST00000486227 RNF41Q9H4P4 317 aaPredicted RBP12.83□□□□□ -0.36
HDAC6-228ENST00000486227 PAG1Q9NWQ8 432 aa12.83□□□□□ -0.36
HDAC6-228ENST00000486227 USP6P35125 1406 aa12.83□□□□□ -0.36
HDAC6-228ENST00000486227 CCDC196A0A1B0GTZ2 297 aa12.83□□□□□ -0.36
HDAC6-228ENST00000486227 GOLGA8AA7E2F4 631 aa12.83□□□□□ -0.36
HDAC6-228ENST00000486227 SETQ01105 290 aaPredicted RBP12.83□□□□□ -0.36
HDAC6-228ENST00000486227 CCDC144CPQ8IYA2 1237 aa12.83□□□□□ -0.36
HDAC6-228ENST00000486227 DNAJC5Q9H3Z4 198 aa12.83□□□□□ -0.36
HDAC6-228ENST00000486227 MPHOSPH10O00566 681 aaKnown RBP12.82□□□□□ -0.36
HDAC6-228ENST00000486227 SERPINC1P01008 464 aa12.82□□□□□ -0.36
HDAC6-228ENST00000486227 ZFYP08048 801 aaPredicted RBP12.82□□□□□ -0.36
HDAC6-228ENST00000486227 TIMM10P62072 90 aa12.82□□□□□ -0.36
HDAC6-228ENST00000486227 MICU3Q86XE3 530 aa12.82□□□□□ -0.36
HDAC6-228ENST00000486227 DHX8Q14562 1220 aaKnown RBP12.82□□□□□ -0.36
HDAC6-228ENST00000486227 SLC9C2Q5TAH2 1124 aa12.82□□□□□ -0.36
HDAC6-228ENST00000486227 ANKRD18AQ8IVF6 992 aa12.82□□□□□ -0.36
HDAC6-228ENST00000486227 SMAP1Q8IYB5 467 aaPredicted RBP12.82□□□□□ -0.36
HDAC6-228ENST00000486227 CEP57L1Q8IYX8 460 aa12.82□□□□□ -0.36
HDAC6-228ENST00000486227 SUCLG2Q96I99 432 aa12.82□□□□□ -0.36
HDAC6-228ENST00000486227 CCP110O43303 1012 aa12.82□□□□□ -0.36
HDAC6-228ENST00000486227 GIGYF1O75420 1035 aaPredicted RBP12.82□□□□□ -0.36
HDAC6-228ENST00000486227 NCOA7Q8NI08 942 aa12.82□□□□□ -0.36
HDAC6-228ENST00000486227 USP44Q9H0E7 712 aa12.82□□□□□ -0.36
HDAC6-228ENST00000486227 RBM27Q9P2N5 1060 aaKnown RBP12.82□□□□□ -0.36
HDAC6-228ENST00000486227 TRPM1Q7Z4N2 1603 aa12.82□□□□□ -0.36
HDAC6-228ENST00000486227 MAP3K4Q9Y6R4 1608 aa12.82□□□□□ -0.36
HDAC6-228ENST00000486227 TMEM67Q5HYA8 995 aa12.81□□□□□ -0.36
HDAC6-228ENST00000486227 TPTE2Q6XPS3 522 aa12.81□□□□□ -0.36
HDAC6-228ENST00000486227 UTP14AQ9BVJ6 771 aaKnown RBP12.81□□□□□ -0.36
HDAC6-228ENST00000486227 ORC3Q9UBD5 711 aaPredicted RBP12.81□□□□□ -0.36
HDAC6-228ENST00000486227 LRRIQ1Q96JM4 1722 aa12.81□□□□□ -0.36
HDAC6-228ENST00000486227 CTCFLQ8NI51 663 aaPredicted RBP12.81□□□□□ -0.36
HDAC6-228ENST00000486227 TMEM94Q12767 1356 aa12.81□□□□□ -0.36
HDAC6-228ENST00000486227 TMEM132AQ24JP5 1023 aa12.81□□□□□ -0.36
HDAC6-228ENST00000486227 PAXIP1Q6ZW49 1069 aaPredicted RBP12.81□□□□□ -0.36
HDAC6-228ENST00000486227 ZGPATQ8N5A5 531 aaKnown RBP12.81□□□□□ -0.36
HDAC6-228ENST00000486227 CCDC94Q9BW85 323 aaPredicted RBP12.81□□□□□ -0.36
HDAC6-228ENST00000486227 USP21Q9UK80 565 aa12.81□□□□□ -0.36
HDAC6-228ENST00000486227 RNF17Q9BXT8 1623 aaKnown RBP12.8□□□□□ -0.36
HDAC6-228ENST00000486227 CKAP2LQ8IYA6 745 aa12.8□□□□□ -0.36
HDAC6-228ENST00000486227 IGSF1Q8N6C5 1336 aa12.8□□□□□ -0.36
HDAC6-228ENST00000486227 GCKRQ14397 625 aa12.8□□□□□ -0.36
HDAC6-228ENST00000486227 ARHGEF25Q86VW2 580 aa12.8□□□□□ -0.36
HDAC6-228ENST00000486227 DNAJC10Q8IXB1 793 aa12.8□□□□□ -0.36
HDAC6-228ENST00000486227 NYXQ9GZU5 481 aa12.8□□□□□ -0.36
HDAC6-228ENST00000486227 ACBD3Q9H3P7 528 aa12.8□□□□□ -0.36
HDAC6-228ENST00000486227 CGNQ9P2M7 1197 aaKnown RBP12.8□□□□□ -0.36
HDAC6-228ENST00000486227 PARP3Q9Y6F1 533 aa12.8□□□□□ -0.36
HDAC6-228ENST00000486227 A2ML1A8K2U0 1454 aa12.8□□□□□ -0.36
HDAC6-228ENST00000486227 FILIP1LQ4L180 1135 aa12.8□□□□□ -0.36
HDAC6-228ENST00000486227 MFSD6Q6ZSS7 791 aa12.8□□□□□ -0.36
HDAC6-228ENST00000486227 KLF18A0A0U1RQI7 1052 aa12.8□□□□□ -0.36
HDAC6-228ENST00000486227 ZNF444Q8N0Y2 327 aaPredicted RBP12.8□□□□□ -0.36
HDAC6-228ENST00000486227 ADCY5O95622 1261 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 ZSCAN22P10073 491 aaPredicted RBP12.79□□□□□ -0.36
HDAC6-228ENST00000486227 PHKG2P15735 406 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 RBM25P49756 843 aaKnown RBP12.79□□□□□ -0.36
HDAC6-228ENST00000486227 AK2P54819 239 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 HSP90B2PQ58FF3 399 aa12.79□□□□□ -0.36
HDAC6-228ENST00000486227 CREB3L3Q68CJ9 461 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms