RNA–Protein interactions for RNA: ENST00000478582.5

CCM2-211, Transcript of CCM2 scaffold protein, human

TSL 3

Gene CCM2, Length 937 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-211	ENST00000478582	ATF7IP	Q6VMQ6	1270 aa		33.89	■■■■□ 3.02
CCM2-211	ENST00000478582	FRAT1	Q92837	279 aa	Predicted RBP	33.89	■■■■□ 3.02
CCM2-211	ENST00000478582	TAOK3	Q9H2K8	898 aa		33.89	■■■■□ 3.02
CCM2-211	ENST00000478582	RCAN3	Q9UKA8	241 aa		33.89	■■■■□ 3.02
CCM2-211	ENST00000478582	DDX60	Q8IY21	1712 aa	Known RBP	33.89	■■■■□ 3.02
CCM2-211	ENST00000478582	CCDC93	Q567U6	631 aa		33.88	■■■■□ 3.01
CCM2-211	ENST00000478582	JARID2	Q92833	1246 aa	Predicted RBP	33.88	■■■■□ 3.01
CCM2-211	ENST00000478582	RPGR	Q92834	1020 aa	Known RBP	33.88	■■■■□ 3.01
CCM2-211	ENST00000478582	PDE8A	O60658	829 aa		33.87	■■■■□ 3.01
CCM2-211	ENST00000478582	TRIM27	P14373	513 aa		33.87	■■■■□ 3.01
CCM2-211	ENST00000478582	CCT4	P50991	539 aa	Known RBP	33.87	■■■■□ 3.01
CCM2-211	ENST00000478582	SF3B3	Q15393	1217 aa	Known RBP	33.87	■■■■□ 3.01
CCM2-211	ENST00000478582	ZKSCAN2	Q63HK3	967 aa		33.87	■■■■□ 3.01
CCM2-211	ENST00000478582	UBE3B	Q7Z3V4	1068 aa		33.87	■■■■□ 3.01
CCM2-211	ENST00000478582	KDM2B	Q8NHM5	1336 aa		33.86	■■■■□ 3.01
CCM2-211	ENST00000478582	LAMB2	P55268	1798 aa		33.86	■■■■□ 3.01
CCM2-211	ENST00000478582	ABCC4	O15439	1325 aa		33.85	■■■■□ 3.01
CCM2-211	ENST00000478582	RBM17	Q96I25	401 aa	Known RBP	33.85	■■■■□ 3.01
CCM2-211	ENST00000478582	PLA2G12B	Q9BX93	195 aa		33.85	■■■■□ 3.01
CCM2-211	ENST00000478582	NMRK2	Q9NPI5	230 aa		33.85	■■■■□ 3.01
CCM2-211	ENST00000478582	GRM8	O00222	908 aa		33.84	■■■■□ 3.01
CCM2-211	ENST00000478582	CRAMP1	Q96RY5	1269 aa		33.84	■■■■□ 3.01
CCM2-211	ENST00000478582	UTY	O14607	1347 aa		33.83	■■■■□ 3.01
CCM2-211	ENST00000478582	C9orf78	Q9NZ63	289 aa	Predicted RBP	33.83	■■■■□ 3.01
CCM2-211	ENST00000478582	DICER1	Q9UPY3	1922 aa	Known RBP	33.83	■■■■□ 3.01
CCM2-211	ENST00000478582	INTS3	Q68E01	1043 aa	Known RBP	33.82	■■■■□ 3
CCM2-211	ENST00000478582	RTKN2	Q8IZC4	609 aa		33.82	■■■■□ 3
CCM2-211	ENST00000478582	OLFM4	Q6UX06	510 aa		33.81	■■■■□ 3
CCM2-211	ENST00000478582	TIAM2	Q8IVF5	1701 aa		33.79	■■■■□ 3
CCM2-211	ENST00000478582	GLTPD2	A6NH11	291 aa		33.79	■■■■□ 3
CCM2-211	ENST00000478582	FKBP4	Q02790	459 aa	Known RBP eCLIP	33.79	■■■■□ 3
CCM2-211	ENST00000478582	CC2D2B	Q6DHV5	1058 aa		33.79	■■■■□ 3
CCM2-211	ENST00000478582	TNN	Q9UQP3	1299 aa		33.79	■■■■□ 3
CCM2-211	ENST00000478582	DDX46	Q7L014	1031 aa	Known RBP	33.78	■■■■□ 3
CCM2-211	ENST00000478582	USP44	Q9H0E7	712 aa		33.78	■■■■□ 3
CCM2-211	ENST00000478582	CTSW	P56202	376 aa		33.77	■■■■□ 3
CCM2-211	ENST00000478582	RRAGC	Q9HB90	399 aa		33.77	■■■■□ 3
CCM2-211	ENST00000478582	TOMM70	O94826	608 aa		33.76	■■■□□ 2.99
CCM2-211	ENST00000478582	NBPF7	P0C2Y1	421 aa	Predicted RBP	33.76	■■■□□ 2.99
CCM2-211	ENST00000478582	CCDC152	Q4G0S7	254 aa		33.76	■■■□□ 2.99
CCM2-211	ENST00000478582	TTLL11	Q8NHH1	800 aa		33.76	■■■□□ 2.99
CCM2-211	ENST00000478582	DPY19L2	Q6NUT2	758 aa		33.75	■■■□□ 2.99
CCM2-211	ENST00000478582	CLUAP1	Q96AJ1	413 aa		33.75	■■■□□ 2.99
CCM2-211	ENST00000478582	CSF1R	P07333	972 aa		33.74	■■■□□ 2.99
CCM2-211	ENST00000478582	GRIPAP1	Q4V328	841 aa		33.74	■■■□□ 2.99
CCM2-211	ENST00000478582	PPEF1	O14829	653 aa	Predicted RBP	33.73	■■■□□ 2.99
CCM2-211	ENST00000478582	BBOX1	O75936	387 aa		33.73	■■■□□ 2.99
CCM2-211	ENST00000478582	FOXO4	P98177	505 aa		33.73	■■■□□ 2.99
CCM2-211	ENST00000478582	GRAP	Q13588	217 aa		33.73	■■■□□ 2.99
CCM2-211	ENST00000478582	DZIP1L	Q8IYY4	767 aa	Known RBP	33.73	■■■□□ 2.99
CCM2-211	ENST00000478582	GRAPL	Q8TC17	118 aa	Predicted RBP	33.73	■■■□□ 2.99
CCM2-211	ENST00000478582	RTL9	Q8NET4	1388 aa		33.72	■■■□□ 2.99
CCM2-211	ENST00000478582	SNED1	Q8TER0	1413 aa		33.72	■■■□□ 2.99
CCM2-211	ENST00000478582	PSMD1	Q99460	953 aa		33.72	■■■□□ 2.99
CCM2-211	ENST00000478582	ZNF277	Q9NRM2	450 aa	Predicted RBP	33.72	■■■□□ 2.99
CCM2-211	ENST00000478582	MS4A1	P11836	297 aa		33.71	■■■□□ 2.99
CCM2-211	ENST00000478582	FTSJ3	Q8IY81	847 aa	Known RBP	33.7	■■■□□ 2.99
CCM2-211	ENST00000478582	C16orf71	Q8IYS4	520 aa	Predicted RBP	33.7	■■■□□ 2.99
CCM2-211	ENST00000478582	TMEM57	Q8N5G2	664 aa		33.7	■■■□□ 2.99
CCM2-211	ENST00000478582	KAZALD1	Q96I82	304 aa		33.7	■■■□□ 2.99
CCM2-211	ENST00000478582	SUCLG2	Q96I99	432 aa		33.7	■■■□□ 2.99
CCM2-211	ENST00000478582	MYH3	P11055	1940 aa		33.69	■■■□□ 2.98
CCM2-211	ENST00000478582	EPHA10	Q5JZY3	1008 aa		33.69	■■■□□ 2.98
CCM2-211	ENST00000478582	VEGFA	P15692	232 aa	Predicted RBP	33.68	■■■□□ 2.98
CCM2-211	ENST00000478582	IARS	P41252	1262 aa	Known RBP	33.68	■■■□□ 2.98
CCM2-211	ENST00000478582	TMC4	Q7Z404	712 aa		33.68	■■■□□ 2.98
CCM2-211	ENST00000478582	TMX4	Q9H1E5	349 aa	Predicted RBP	33.68	■■■□□ 2.98
CCM2-211	ENST00000478582	SEC31B	Q9NQW1	1179 aa		33.68	■■■□□ 2.98
CCM2-211	ENST00000478582	ATP6V0A2	Q9Y487	856 aa		33.68	■■■□□ 2.98
CCM2-211	ENST00000478582	RLBP1	P12271	317 aa		33.67	■■■□□ 2.98
CCM2-211	ENST00000478582	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	33.67	■■■□□ 2.98
CCM2-211	ENST00000478582	CELF1	Q92879	486 aa	Known RBP	33.67	■■■□□ 2.98
CCM2-211	ENST00000478582	CCDC85A	Q96PX6	553 aa	Predicted RBP	33.67	■■■□□ 2.98
CCM2-211	ENST00000478582	GREM2	Q9H772	168 aa		33.67	■■■□□ 2.98
CCM2-211	ENST00000478582	RPS8	P62241	208 aa	Known RBP	33.66	■■■□□ 2.98
CCM2-211	ENST00000478582	RBM46	Q8TBY0	533 aa	Known RBP	33.66	■■■□□ 2.98
CCM2-211	ENST00000478582	HDAC5	Q9UQL6	1122 aa		33.66	■■■□□ 2.98
CCM2-211	ENST00000478582	UBTFL1	P0CB47	393 aa	Predicted RBP	33.65	■■■□□ 2.98
CCM2-211	ENST00000478582	RABL6	Q3YEC7	729 aa	Predicted RBP	33.65	■■■□□ 2.98
CCM2-211	ENST00000478582	LMBR1L	Q6UX01	489 aa		33.65	■■■□□ 2.98
CCM2-211	ENST00000478582	SP8	Q8IXZ3	490 aa		33.65	■■■□□ 2.98
CCM2-211	ENST00000478582	GNAI3	P08754	354 aa		33.64	■■■□□ 2.98
CCM2-211	ENST00000478582	CDC5L	Q99459	802 aa	Known RBP	33.64	■■■□□ 2.98
CCM2-211	ENST00000478582	MEIS3	Q99687	375 aa		33.64	■■■□□ 2.98
CCM2-211	ENST00000478582	PLIN1	O60240	522 aa		33.63	■■■□□ 2.97
CCM2-211	ENST00000478582	SLC51A	Q86UW1	340 aa		33.63	■■■□□ 2.97
CCM2-211	ENST00000478582	WDR90	Q96KV7	1748 aa		33.62	■■■□□ 2.97
CCM2-211	ENST00000478582	POTEC	B2RU33	542 aa		33.62	■■■□□ 2.97
CCM2-211	ENST00000478582	DDN	O94850	711 aa	Predicted RBP	33.62	■■■□□ 2.97
CCM2-211	ENST00000478582	HSPA6	P17066	643 aa		33.62	■■■□□ 2.97
CCM2-211	ENST00000478582	FAM161A	Q3B820	660 aa		33.62	■■■□□ 2.97
CCM2-211	ENST00000478582	BICC1	Q9H694	974 aa	Known RBP	33.62	■■■□□ 2.97
CCM2-211	ENST00000478582	COL4A1	P02462	1669 aa		33.61	■■■□□ 2.97
CCM2-211	ENST00000478582	TAF1	P21675	1872 aa		33.61	■■■□□ 2.97
CCM2-211	ENST00000478582	ITGA6	P23229	1130 aa		33.61	■■■□□ 2.97
CCM2-211	ENST00000478582	ANKRD44	Q8N8A2	993 aa		33.61	■■■□□ 2.97
CCM2-211	ENST00000478582	PANK1	Q8TE04	598 aa		33.61	■■■□□ 2.97
CCM2-211	ENST00000478582	PDE3A	Q14432	1141 aa		33.6	■■■□□ 2.97
CCM2-211	ENST00000478582	ANKRD18A	Q8IVF6	992 aa		33.6	■■■□□ 2.97
CCM2-211	ENST00000478582	ITPRIP	Q8IWB1	547 aa		33.59	■■■□□ 2.97

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