RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 ZC3H4Q9UPT8 1303 aaKnown RBP19.84■□□□□ 0.77
HMGA1-206ENST00000478214 H7C1W4 665 aa19.84■□□□□ 0.77
HMGA1-206ENST00000478214 BEND3Q5T5X7 828 aa19.84■□□□□ 0.77
HMGA1-206ENST00000478214 UBE3BQ7Z3V4 1068 aa19.84■□□□□ 0.77
HMGA1-206ENST00000478214 CELF1Q92879 486 aaKnown RBP19.84■□□□□ 0.77
HMGA1-206ENST00000478214 PSMD1Q99460 953 aa19.84■□□□□ 0.77
HMGA1-206ENST00000478214 SP8Q8IXZ3 490 aa19.83■□□□□ 0.77
HMGA1-206ENST00000478214 CCDC85AQ96PX6 553 aaPredicted RBP19.83■□□□□ 0.77
HMGA1-206ENST00000478214 TMX4Q9H1E5 349 aaPredicted RBP19.83■□□□□ 0.77
HMGA1-206ENST00000478214 SEC31BQ9NQW1 1179 aa19.83■□□□□ 0.77
HMGA1-206ENST00000478214 CT47B1P0C2W7 299 aaPredicted RBP19.82■□□□□ 0.76
HMGA1-206ENST00000478214 ALDH1L2Q3SY69 923 aa19.82■□□□□ 0.76
HMGA1-206ENST00000478214 CCDC152Q4G0S7 254 aa19.82■□□□□ 0.76
HMGA1-206ENST00000478214 GRIPAP1Q4V328 841 aa19.82■□□□□ 0.76
HMGA1-206ENST00000478214 SLC4A10Q6U841 1118 aa19.82■□□□□ 0.76
HMGA1-206ENST00000478214 NMRK2Q9NPI5 230 aa19.82■□□□□ 0.76
HMGA1-206ENST00000478214 IARSP41252 1262 aaKnown RBP19.81■□□□□ 0.76
HMGA1-206ENST00000478214 CASP7P55210 303 aa19.81■□□□□ 0.76
HMGA1-206ENST00000478214 CTSWP56202 376 aa19.81■□□□□ 0.76
HMGA1-206ENST00000478214 SMC4Q9NTJ3 1288 aa19.81■□□□□ 0.76
HMGA1-206ENST00000478214 KDM2BQ8NHM5 1336 aa19.8■□□□□ 0.76
HMGA1-206ENST00000478214 GLTPD2A6NH11 291 aa19.8■□□□□ 0.76
HMGA1-206ENST00000478214 RPS8P62241 208 aaKnown RBP19.8■□□□□ 0.76
HMGA1-206ENST00000478214 TMC4Q7Z404 712 aa19.8■□□□□ 0.76
HMGA1-206ENST00000478214 COL4A1P02462 1669 aa19.8■□□□□ 0.76
HMGA1-206ENST00000478214 CCDC88AQ3V6T2 1871 aa19.79■□□□□ 0.76
HMGA1-206ENST00000478214 KIF3CO14782 793 aa19.79■□□□□ 0.76
HMGA1-206ENST00000478214 TTLL11Q8NHH1 800 aa19.79■□□□□ 0.76
HMGA1-206ENST00000478214 TAF1P21675 1872 aa19.79■□□□□ 0.76
HMGA1-206ENST00000478214 PTPRCP08575 1304 aa19.78■□□□□ 0.76
HMGA1-206ENST00000478214 DPP8Q6V1X1 898 aaPredicted RBP19.78■□□□□ 0.76
HMGA1-206ENST00000478214 MPNDQ8N594 471 aa19.78■□□□□ 0.76
HMGA1-206ENST00000478214 SRCIN1Q9C0H9 1055 aa19.78■□□□□ 0.76
HMGA1-206ENST00000478214 TIAM2Q8IVF5 1701 aa19.78■□□□□ 0.76
HMGA1-206ENST00000478214 ALDH1L1O75891 902 aa19.77■□□□□ 0.76
HMGA1-206ENST00000478214 DPY19L2Q6NUT2 758 aa19.77■□□□□ 0.76
HMGA1-206ENST00000478214 PLA2G12BQ9BX93 195 aa19.77■□□□□ 0.76
HMGA1-206ENST00000478214 GREM2Q9H772 168 aa19.77■□□□□ 0.76
HMGA1-206ENST00000478214 RRAGCQ9HB90 399 aa19.77■□□□□ 0.76
HMGA1-206ENST00000478214 GRM8O00222 908 aa19.76■□□□□ 0.75
HMGA1-206ENST00000478214 RARSP54136 660 aaKnown RBP19.76■□□□□ 0.75
HMGA1-206ENST00000478214 LARGE2Q8N3Y3 721 aa19.76■□□□□ 0.75
HMGA1-206ENST00000478214 RTFDC1Q9BY42 306 aaPredicted RBP19.76■□□□□ 0.75
HMGA1-206ENST00000478214 DICER1Q9UPY3 1922 aaKnown RBP19.75■□□□□ 0.75
HMGA1-206ENST00000478214 C1QTNF8P60827 252 aa19.75■□□□□ 0.75
HMGA1-206ENST00000478214 JDP2Q8WYK2 163 aa19.75■□□□□ 0.75
HMGA1-206ENST00000478214 C9orf78Q9NZ63 289 aaPredicted RBP19.75■□□□□ 0.75
HMGA1-206ENST00000478214 ZBED9Q6R2W3 1325 aa19.75■□□□□ 0.75
HMGA1-206ENST00000478214 PPIP5K2O43314 1243 aa19.74■□□□□ 0.75
HMGA1-206ENST00000478214 DDNO94850 711 aaPredicted RBP19.74■□□□□ 0.75
HMGA1-206ENST00000478214 GPSM2P81274 684 aa19.74■□□□□ 0.75
HMGA1-206ENST00000478214 AOC3Q16853 763 aa19.74■□□□□ 0.75
HMGA1-206ENST00000478214 ANKRD18AQ8IVF6 992 aa19.74■□□□□ 0.75
HMGA1-206ENST00000478214 SUPT20HQ8NEM7 779 aa19.74■□□□□ 0.75
HMGA1-206ENST00000478214 CDC5LQ99459 802 aaKnown RBP19.74■□□□□ 0.75
HMGA1-206ENST00000478214 NOB1Q9ULX3 412 aaKnown RBP19.74■□□□□ 0.75
HMGA1-206ENST00000478214 NSFL1CQ9UNZ2 370 aaKnown RBP19.74■□□□□ 0.75
HMGA1-206ENST00000478214 COL4A5P29400 1685 aa19.74■□□□□ 0.75
HMGA1-206ENST00000478214 ZNF541Q9H0D2 1346 aa19.74■□□□□ 0.75
HMGA1-206ENST00000478214 RTL9Q8NET4 1388 aa19.73■□□□□ 0.75
HMGA1-206ENST00000478214 FZD9O00144 591 aa19.73■□□□□ 0.75
HMGA1-206ENST00000478214 CSF1RP07333 972 aa19.73■□□□□ 0.75
HMGA1-206ENST00000478214 BRPF1P55201 1214 aaPredicted RBP19.73■□□□□ 0.75
HMGA1-206ENST00000478214 FOXO4P98177 505 aa19.73■□□□□ 0.75
HMGA1-206ENST00000478214 FAM161AQ3B820 660 aa19.73■□□□□ 0.75
HMGA1-206ENST00000478214 EPHA10Q5JZY3 1008 aa19.72■□□□□ 0.75
HMGA1-206ENST00000478214 VPS33BQ9H267 617 aa19.72■□□□□ 0.75
HMGA1-206ENST00000478214 LRRC37AA6NMS7 1700 aa19.71■□□□□ 0.75
HMGA1-206ENST00000478214 POTECB2RU33 542 aa19.71■□□□□ 0.75
HMGA1-206ENST00000478214 VEGFAP15692 232 aaPredicted RBP19.71■□□□□ 0.75
HMGA1-206ENST00000478214 ITGA6P23229 1130 aa19.71■□□□□ 0.75
HMGA1-206ENST00000478214 KIAA2012Q0VF49 1180 aa19.71■□□□□ 0.75
HMGA1-206ENST00000478214 NIM1KQ8IY84 436 aa19.71■□□□□ 0.75
HMGA1-206ENST00000478214 POLLQ9UGP5 575 aa19.71■□□□□ 0.75
HMGA1-206ENST00000478214 DUOX1Q9NRD9 1551 aa19.7■□□□□ 0.74
HMGA1-206ENST00000478214 C6orf229H3BNL8 230 aa19.7■□□□□ 0.74
HMGA1-206ENST00000478214 NBPF7P0C2Y1 421 aaPredicted RBP19.7■□□□□ 0.74
HMGA1-206ENST00000478214 TOMM70O94826 608 aa19.69■□□□□ 0.74
HMGA1-206ENST00000478214 EIF6P56537 245 aaKnown RBP19.69■□□□□ 0.74
HMGA1-206ENST00000478214 LMBR1LQ6UX01 489 aa19.69■□□□□ 0.74
HMGA1-206ENST00000478214 C16orf71Q8IYS4 520 aaPredicted RBP19.69■□□□□ 0.74
HMGA1-206ENST00000478214 TBC1D16Q8TBP0 767 aa19.69■□□□□ 0.74
HMGA1-206ENST00000478214 SUCLG2Q96I99 432 aa19.69■□□□□ 0.74
HMGA1-206ENST00000478214 GPR101Q96P66 508 aaPredicted RBP19.69■□□□□ 0.74
HMGA1-206ENST00000478214 API5Q9BZZ5 524 aaKnown RBP19.69■□□□□ 0.74
HMGA1-206ENST00000478214 BSDC1Q9NW68 430 aaPredicted RBP19.69■□□□□ 0.74
HMGA1-206ENST00000478214 PODXL2Q9NZ53 605 aa19.69■□□□□ 0.74
HMGA1-206ENST00000478214 ANKIB1Q9P2G1 1089 aa19.69■□□□□ 0.74
HMGA1-206ENST00000478214 CHMP3Q9Y3E7 222 aa19.69■□□□□ 0.74
HMGA1-206ENST00000478214 UTYO14607 1347 aa19.69■□□□□ 0.74
HMGA1-206ENST00000478214 BCAR3O75815 825 aa19.68■□□□□ 0.74
HMGA1-206ENST00000478214 IGHMBP2P38935 993 aaKnown RBP19.68■□□□□ 0.74
HMGA1-206ENST00000478214 KAZALD1Q96I82 304 aa19.68■□□□□ 0.74
HMGA1-206ENST00000478214 MINPP1Q9UNW1 487 aa19.68■□□□□ 0.74
HMGA1-206ENST00000478214 KIF16BQ96L93 1317 aa19.68■□□□□ 0.74
HMGA1-206ENST00000478214 MYH3P11055 1940 aa19.68■□□□□ 0.74
HMGA1-206ENST00000478214 RIMBP2O15034 1052 aa19.67■□□□□ 0.74
HMGA1-206ENST00000478214 UFL1O94874 794 aa19.67■□□□□ 0.74
HMGA1-206ENST00000478214 WASHC4Q2M389 1173 aa19.67■□□□□ 0.74
HMGA1-206ENST00000478214 L3MBTL3Q96JM7 780 aaPredicted RBP19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms