RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 PHACTR3Q96KR7 559 aa16.11■□□□□ 0.17
HDAC1-206ENST00000476391 CHD2O14647 1828 aaKnown RBP16.11■□□□□ 0.17
HDAC1-206ENST00000476391 FYB1O15117 783 aa16.11■□□□□ 0.17
HDAC1-206ENST00000476391 GIGYF1O75420 1035 aaPredicted RBP16.11■□□□□ 0.17
HDAC1-206ENST00000476391 URI1O94763 535 aaPredicted RBP16.11■□□□□ 0.17
HDAC1-206ENST00000476391 TRIM65Q6PJ69 517 aa16.11■□□□□ 0.17
HDAC1-206ENST00000476391 RABGGTAQ92696 567 aa16.11■□□□□ 0.17
HDAC1-206ENST00000476391 LSG1Q9H089 658 aaKnown RBP16.11■□□□□ 0.17
HDAC1-206ENST00000476391 SUFUQ9UMX1 484 aa16.11■□□□□ 0.17
HDAC1-206ENST00000476391 PARP3Q9Y6F1 533 aa16.11■□□□□ 0.17
HDAC1-206ENST00000476391 TM6SF1Q9BZW5 370 aa16.1■□□□□ 0.17
HDAC1-206ENST00000476391 PDRG1Q9NUG6 133 aa16.1■□□□□ 0.17
HDAC1-206ENST00000476391 ANO10Q9NW15 660 aa16.1■□□□□ 0.17
HDAC1-206ENST00000476391 UGGT1Q9NYU2 1555 aa16.1■□□□□ 0.17
HDAC1-206ENST00000476391 BRD3Q15059 726 aa16.1■□□□□ 0.17
HDAC1-206ENST00000476391 FERMT3Q86UX7 667 aa16.1■□□□□ 0.17
HDAC1-206ENST00000476391 CNPY4Q8N129 248 aa16.1■□□□□ 0.17
HDAC1-206ENST00000476391 PGBD1Q96JS3 809 aa16.1■□□□□ 0.17
HDAC1-206ENST00000476391 DLG5Q8TDM6 1919 aa16.1■□□□□ 0.17
HDAC1-206ENST00000476391 RIMS2Q9UQ26 1411 aa16.1■□□□□ 0.17
HDAC1-206ENST00000476391 PSME1Q06323 249 aa16.09■□□□□ 0.17
HDAC1-206ENST00000476391 ST3GAL1Q11201 340 aa16.09■□□□□ 0.17
HDAC1-206ENST00000476391 LONRF2Q1L5Z9 754 aa16.09■□□□□ 0.17
HDAC1-206ENST00000476391 ARMCX5Q6P1M9 558 aa16.09■□□□□ 0.17
HDAC1-206ENST00000476391 FAM173BQ6P4H8 233 aa16.09■□□□□ 0.17
HDAC1-206ENST00000476391 RSRC2Q7L4I2 434 aaKnown RBP16.09■□□□□ 0.17
HDAC1-206ENST00000476391 TADA2BQ86TJ2 420 aa16.09■□□□□ 0.17
HDAC1-206ENST00000476391 SYTL4Q96C24 671 aaPredicted RBP16.09■□□□□ 0.17
HDAC1-206ENST00000476391 FAM107BQ9H098 131 aa16.09■□□□□ 0.17
HDAC1-206ENST00000476391 A0A087WUV0 522 aaPredicted RBP16.09■□□□□ 0.17
HDAC1-206ENST00000476391 SRGAP3O43295 1099 aa16.09■□□□□ 0.17
HDAC1-206ENST00000476391 APOBRQ0VD83 1088 aa16.09■□□□□ 0.17
HDAC1-206ENST00000476391 ZCCHC11Q5TAX3 1644 aaKnown RBP16.09■□□□□ 0.17
HDAC1-206ENST00000476391 PREX1Q8TCU6 1659 aa16.09■□□□□ 0.17
HDAC1-206ENST00000476391 MPHOSPH8Q99549 860 aa16.09■□□□□ 0.17
HDAC1-206ENST00000476391 PARD6BQ9BYG5 372 aa16.09■□□□□ 0.17
HDAC1-206ENST00000476391 NAT10Q9H0A0 1025 aaKnown RBP16.09■□□□□ 0.17
HDAC1-206ENST00000476391 VPS18Q9P253 973 aa16.09■□□□□ 0.17
HDAC1-206ENST00000476391 SETD1AO15047 1707 aaKnown RBP16.08■□□□□ 0.17
HDAC1-206ENST00000476391 CEP57L1Q8IYX8 460 aa16.08■□□□□ 0.17
HDAC1-206ENST00000476391 HNRNPLLQ8WVV9 542 aaKnown RBP16.08■□□□□ 0.17
HDAC1-206ENST00000476391 ME3Q16798 604 aa16.08■□□□□ 0.16
HDAC1-206ENST00000476391 ZSWIM6Q9HCJ5 1215 aa16.08■□□□□ 0.16
HDAC1-206ENST00000476391 TFIP11Q9UBB9 837 aaKnown RBP16.08■□□□□ 0.16
HDAC1-206ENST00000476391 STAG3Q9UJ98 1225 aa16.08■□□□□ 0.16
HDAC1-206ENST00000476391 ARHGEF28Q8N1W1 1705 aaKnown RBP16.07■□□□□ 0.16
HDAC1-206ENST00000476391 EIF3JO75822 258 aaKnown RBP16.07■□□□□ 0.16
HDAC1-206ENST00000476391 TRDNQ13061 729 aa16.07■□□□□ 0.16
HDAC1-206ENST00000476391 FOXR1Q6PIV2 292 aa16.07■□□□□ 0.16
HDAC1-206ENST00000476391 CYP46A1Q9Y6A2 500 aa16.07■□□□□ 0.16
HDAC1-206ENST00000476391 FRMPD1Q5SYB0 1578 aa16.07■□□□□ 0.16
HDAC1-206ENST00000476391 GNAI2P04899 355 aa16.07■□□□□ 0.16
HDAC1-206ENST00000476391 USP8P40818 1118 aa16.07■□□□□ 0.16
HDAC1-206ENST00000476391 TDO2P48775 406 aa16.07■□□□□ 0.16
HDAC1-206ENST00000476391 MAP3K9P80192 1104 aa16.07■□□□□ 0.16
HDAC1-206ENST00000476391 DNAAF4Q8WXU2 420 aa16.07■□□□□ 0.16
HDAC1-206ENST00000476391 ADGRB3O60242 1522 aa16.07■□□□□ 0.16
HDAC1-206ENST00000476391 CCT4P50991 539 aaKnown RBP16.06■□□□□ 0.16
HDAC1-206ENST00000476391 EIF5P55010 431 aaKnown RBP16.06■□□□□ 0.16
HDAC1-206ENST00000476391 TACO1Q9BSH4 297 aaKnown RBP16.06■□□□□ 0.16
HDAC1-206ENST00000476391 PPLO60437 1756 aa16.06■□□□□ 0.16
HDAC1-206ENST00000476391 GNL2Q13823 731 aaKnown RBP16.06■□□□□ 0.16
HDAC1-206ENST00000476391 FCHSD1Q86WN1 690 aa16.06■□□□□ 0.16
HDAC1-206ENST00000476391 EPC1Q9H2F5 836 aa16.06■□□□□ 0.16
HDAC1-206ENST00000476391 CABP2Q9NPB3 220 aa16.06■□□□□ 0.16
HDAC1-206ENST00000476391 CD163L1Q9NR16 1453 aa16.06■□□□□ 0.16
HDAC1-206ENST00000476391 PPFIA4O75335 1185 aa16.05■□□□□ 0.16
HDAC1-206ENST00000476391 TXLNAP40222 546 aa16.05■□□□□ 0.16
HDAC1-206ENST00000476391 PPP2R3AQ06190 1150 aa16.05■□□□□ 0.16
HDAC1-206ENST00000476391 HDXQ7Z353 690 aa16.05■□□□□ 0.16
HDAC1-206ENST00000476391 TMC6Q7Z403 805 aa16.05■□□□□ 0.16
HDAC1-206ENST00000476391 GOLGA1Q92805 767 aa16.05■□□□□ 0.16
HDAC1-206ENST00000476391 TERF2IPQ9NYB0 399 aa16.05■□□□□ 0.16
HDAC1-206ENST00000476391 CPA1P15085 419 aa16.05■□□□□ 0.16
HDAC1-206ENST00000476391 DNAJC21Q5F1R6 531 aaKnown RBP16.05■□□□□ 0.16
HDAC1-206ENST00000476391 LRRC31Q6UY01 552 aa16.05■□□□□ 0.16
HDAC1-206ENST00000476391 AOPEPQ8N6M6 819 aa16.05■□□□□ 0.16
HDAC1-206ENST00000476391 KCNB2Q92953 911 aa16.05■□□□□ 0.16
HDAC1-206ENST00000476391 ADCY9O60503 1353 aa16.04■□□□□ 0.16
HDAC1-206ENST00000476391 ABCC1P33527 1531 aa16.04■□□□□ 0.16
HDAC1-206ENST00000476391 FANCGO15287 622 aa16.04■□□□□ 0.16
HDAC1-206ENST00000476391 CCDC30Q5VVM6 783 aa16.04■□□□□ 0.16
HDAC1-206ENST00000476391 EGFL6Q8IUX8 553 aa16.04■□□□□ 0.16
HDAC1-206ENST00000476391 JAKMIP1Q96N16 626 aaKnown RBP16.04■□□□□ 0.16
HDAC1-206ENST00000476391 PDE11AQ9HCR9 933 aa16.04■□□□□ 0.16
HDAC1-206ENST00000476391 CFAP45Q9UL16 551 aa16.04■□□□□ 0.16
HDAC1-206ENST00000476391 MRFAP1Q9Y605 127 aa16.04■□□□□ 0.16
HDAC1-206ENST00000476391 KIF20BQ96Q89 1820 aa16.04■□□□□ 0.16
HDAC1-206ENST00000476391 ZSCAN12O43309 604 aa16.04■□□□□ 0.16
HDAC1-206ENST00000476391 HMOX1P09601 288 aa16.03■□□□□ 0.16
HDAC1-206ENST00000476391 ERC1Q8IUD2 1116 aa16.03■□□□□ 0.16
HDAC1-206ENST00000476391 NECAB1Q8N987 351 aa16.03■□□□□ 0.16
HDAC1-206ENST00000476391 XPO4Q9C0E2 1151 aaKnown RBP16.03■□□□□ 0.16
HDAC1-206ENST00000476391 GOLGA6L9A6NEM1 432 aa16.03■□□□□ 0.16
HDAC1-206ENST00000476391 USP5P45974 858 aa16.03■□□□□ 0.16
HDAC1-206ENST00000476391 HSP90AB3PQ58FF7 597 aa16.03■□□□□ 0.16
HDAC1-206ENST00000476391 FAM71BQ8TC56 605 aa16.03■□□□□ 0.16
HDAC1-206ENST00000476391 BPIFA3Q9BQP9 254 aa16.03■□□□□ 0.16
HDAC1-206ENST00000476391 AKAP2Q9Y2D5 859 aa16.03■□□□□ 0.16
HDAC1-206ENST00000476391 CCDC189A1A4V9 331 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms