RNA–Protein interactions for RNA: ENST00000473684.5

TMEM39A-206, Transcript of transmembrane protein 39A, humanhuman

TSL 5

Gene TMEM39A, Length 3,043 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-206ENST00000473684 CCDC144AA2RUR9 1427 aa6.32□□□□□ -1.4
TMEM39A-206ENST00000473684 PREX2Q70Z35 1606 aa6.32□□□□□ -1.4
TMEM39A-206ENST00000473684 KDM2BQ8NHM5 1336 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 RIMS1Q86UR5 1692 aaKnown RBP6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 HMGN5P82970 282 aaKnown RBP6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 MTFR1Q15390 333 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 SKOR2Q2VWA4 1001 aaPredicted RBP6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 ESCO1Q5FWF5 840 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 MYRIPQ8NFW9 859 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 PGPEP1Q9NXJ5 209 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 RCAN3Q9UKA8 241 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 MYOM3Q5VTT5 1437 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 GTF2F1P35269 517 aaKnown RBP eCLIP6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 IFFO2Q5TF58 517 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 CARD10Q9BWT7 1032 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 SCHIP1Q9P0W5 487 aaPredicted RBP6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 EMILIN1Q9Y6C2 1016 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 ANKRD33BA6NCL7 494 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 PLXNC1O60486 1568 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 CLSTN1O94985 981 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 NPR3P17342 541 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 SMTNP53814 917 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 NPAS4Q8IUM7 802 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 STAG2Q8N3U4 1231 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 XAGE2Q96GT9 111 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 FEZ1Q99689 392 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 SLKQ9H2G2 1235 aaPredicted RBP6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 CALCOCO1Q9P1Z2 691 aa6.31□□□□□ -1.4
TMEM39A-206ENST00000473684 C3P01024 1663 aa6.3□□□□□ -1.4
TMEM39A-206ENST00000473684 IBTKQ9P2D0 1353 aaPredicted RBP6.3□□□□□ -1.4
TMEM39A-206ENST00000473684 A0A1W2PRU2 124 aa6.3□□□□□ -1.4
TMEM39A-206ENST00000473684 A6NJY4 79 aa6.3□□□□□ -1.4
TMEM39A-206ENST00000473684 POLR3GLQ9BT43 218 aa6.3□□□□□ -1.4
TMEM39A-206ENST00000473684 RAB6BQ9NRW1 208 aa6.3□□□□□ -1.4
TMEM39A-206ENST00000473684 CHMP5Q9NZZ3 219 aa6.3□□□□□ -1.4
TMEM39A-206ENST00000473684 MAP3K1Q13233 1512 aa6.3□□□□□ -1.4
TMEM39A-206ENST00000473684 IL2RAP01589 272 aa6.3□□□□□ -1.4
TMEM39A-206ENST00000473684 HMGB1P09429 215 aaKnown RBP6.3□□□□□ -1.4
TMEM39A-206ENST00000473684 NGEFQ8N5V2 710 aa6.3□□□□□ -1.4
TMEM39A-206ENST00000473684 PLCD4Q9BRC7 762 aa6.3□□□□□ -1.4
TMEM39A-206ENST00000473684 DCTN4Q9UJW0 460 aa6.3□□□□□ -1.4
TMEM39A-206ENST00000473684 HRH3Q9Y5N1 445 aa6.3□□□□□ -1.4
TMEM39A-206ENST00000473684 NASPP49321 788 aaPredicted RBP6.29□□□□□ -1.4
TMEM39A-206ENST00000473684 PDE3BQ13370 1112 aa6.29□□□□□ -1.4
TMEM39A-206ENST00000473684 SPRYD7Q5W111 196 aa6.29□□□□□ -1.4
TMEM39A-206ENST00000473684 CERS3Q8IU89 383 aa6.29□□□□□ -1.4
TMEM39A-206ENST00000473684 C2orf49Q9BVC5 232 aaPredicted RBP6.29□□□□□ -1.4
TMEM39A-206ENST00000473684 ARHGEF10LQ9HCE6 1279 aa6.29□□□□□ -1.4
TMEM39A-206ENST00000473684 FANCAO15360 1455 aa6.29□□□□□ -1.4
TMEM39A-206ENST00000473684 MAPK1P28482 360 aa6.29□□□□□ -1.4
TMEM39A-206ENST00000473684 ATP2B3Q16720 1220 aa6.29□□□□□ -1.4
TMEM39A-206ENST00000473684 TBCELQ5QJ74 424 aa6.29□□□□□ -1.4
TMEM39A-206ENST00000473684 CREBRFQ8IUR6 639 aa6.29□□□□□ -1.4
TMEM39A-206ENST00000473684 SLC9A9Q8IVB4 645 aa6.29□□□□□ -1.4
TMEM39A-206ENST00000473684 KDF1Q8NAX2 398 aaPredicted RBP6.29□□□□□ -1.4
TMEM39A-206ENST00000473684 ZKSCAN5Q9Y2L8 839 aa6.29□□□□□ -1.4
TMEM39A-206ENST00000473684 PTPRGP23470 1445 aa6.29□□□□□ -1.4
TMEM39A-206ENST00000473684 NCOA1Q15788 1441 aa6.29□□□□□ -1.4
TMEM39A-206ENST00000473684 COL17A1Q9UMD9 1497 aaPredicted RBP6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 PPP1R12BO60237 982 aaPredicted RBP6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 CTR9Q6PD62 1173 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 ASB16Q96NS5 453 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 BCL2L13Q9BXK5 485 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 USP19O94966 1318 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 PTPRMP28827 1452 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 ALDH1A1P00352 501 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 ZNF16P17020 682 aaPredicted RBP6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 NNTQ13423 1086 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 VTI1AQ96AJ9 217 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 SAP130Q9H0E3 1048 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 KIF14Q15058 1648 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 CAMSAP2Q08AD1 1489 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 LTBP4Q8N2S1 1624 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 CCDC7Q96M83 1385 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 ZFYVE16Q7Z3T8 1539 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 CDK2AP1O14519 115 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 FAM13AO94988 1023 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 ADH1AP07327 375 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 LMOD3Q0VAK6 560 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 C16orf46Q6P387 395 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 POTEAQ6S8J7 498 aa6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 IQSEC3Q9UPP2 1182 aaPredicted RBP6.28□□□□□ -1.4
TMEM39A-206ENST00000473684 PLA2R1Q13018 1463 aa6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 XPCQ01831 940 aaPredicted RBP6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 EGFL6Q8IUX8 553 aa6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 CNKSR1Q969H4 720 aa6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 MYCBPQ99417 103 aaPredicted RBP6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 ESYT1Q9BSJ8 1104 aa6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 OGFRQ9NZT2 677 aa6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 PKD2L1Q9P0L9 805 aa6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 LRRIQ1Q96JM4 1722 aa6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 EIF2AK4Q9P2K8 1649 aaKnown RBP6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 NPATQ14207 1427 aa6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 HSP90AB1P08238 724 aaKnown RBP6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 HSP90AB3PQ58FF7 597 aa6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 Q6ZVU0 165 aa6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 ZNF598Q86UK7 904 aaKnown RBP6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 PDLIM2Q96JY6 352 aa6.27□□□□□ -1.41
TMEM39A-206ENST00000473684 USP3Q9Y6I4 520 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms