RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 EIF6P56537 245 aaKnown RBP21.07■□□□□ 0.96
COL9A3-208ENST00000469802 CCDC30Q5VVM6 783 aa21.07■□□□□ 0.96
COL9A3-208ENST00000469802 TSR2Q969E8 191 aaKnown RBP21.07■□□□□ 0.96
COL9A3-208ENST00000469802 PASKQ96RG2 1323 aa21.06■□□□□ 0.96
COL9A3-208ENST00000469802 PPIP5K2O43314 1243 aa21.06■□□□□ 0.96
COL9A3-208ENST00000469802 AOC3Q16853 763 aa21.06■□□□□ 0.96
COL9A3-208ENST00000469802 TMC4Q7Z404 712 aa21.06■□□□□ 0.96
COL9A3-208ENST00000469802 RIC3Q7Z5B4 369 aa21.06■□□□□ 0.96
COL9A3-208ENST00000469802 NIM1KQ8IY84 436 aa21.06■□□□□ 0.96
COL9A3-208ENST00000469802 SUPT20HQ8NEM7 779 aa21.06■□□□□ 0.96
COL9A3-208ENST00000469802 CHMP4AQ9BY43 222 aa21.06■□□□□ 0.96
COL9A3-208ENST00000469802 TMX4Q9H1E5 349 aaPredicted RBP21.06■□□□□ 0.96
COL9A3-208ENST00000469802 ANP32CO43423 234 aa21.05■□□□□ 0.96
COL9A3-208ENST00000469802 DPP8Q6V1X1 898 aaPredicted RBP21.05■□□□□ 0.96
COL9A3-208ENST00000469802 MPNDQ8N594 471 aa21.05■□□□□ 0.96
COL9A3-208ENST00000469802 PCNTO95613 3336 aa21.05■□□□□ 0.96
COL9A3-208ENST00000469802 IRS4O14654 1257 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-208ENST00000469802 SCNN1DP51172 638 aa21.04■□□□□ 0.96
COL9A3-208ENST00000469802 PNMA8AQ86V59 439 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-208ENST00000469802 ZBTB38Q8NAP3 1195 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-208ENST00000469802 SPEF2Q9C093 1822 aa21.04■□□□□ 0.96
COL9A3-208ENST00000469802 TRPM7Q96QT4 1865 aa21.03■□□□□ 0.96
COL9A3-208ENST00000469802 ITGBL1O95965 494 aaPredicted RBP21.03■□□□□ 0.96
COL9A3-208ENST00000469802 KIAA2012Q0VF49 1180 aa21.03■□□□□ 0.96
COL9A3-208ENST00000469802 CCDC191Q8NCU4 936 aa21.03■□□□□ 0.96
COL9A3-208ENST00000469802 CELF1Q92879 486 aaKnown RBP21.03■□□□□ 0.96
COL9A3-208ENST00000469802 MYD88Q99836 296 aa21.03■□□□□ 0.96
COL9A3-208ENST00000469802 METTL22Q9BUU2 404 aaPredicted RBP21.03■□□□□ 0.96
COL9A3-208ENST00000469802 CREBZFQ9NS37 354 aa21.03■□□□□ 0.96
COL9A3-208ENST00000469802 EAPPQ56P03 285 aaPredicted RBP21.02■□□□□ 0.96
COL9A3-208ENST00000469802 RTL5Q5HYW3 569 aaPredicted RBP21.02■□□□□ 0.96
COL9A3-208ENST00000469802 ZNRF3Q9ULT6 936 aa21.02■□□□□ 0.96
COL9A3-208ENST00000469802 GJA3Q9Y6H8 435 aa21.02■□□□□ 0.96
COL9A3-208ENST00000469802 PSME4Q14997 1843 aa21.01■□□□□ 0.95
COL9A3-208ENST00000469802 DDX58O95786 925 aaKnown RBP21.01■□□□□ 0.95
COL9A3-208ENST00000469802 PCCAP05165 728 aaPredicted RBP21.01■□□□□ 0.95
COL9A3-208ENST00000469802 FANCIQ9NVI1 1328 aa21.01■□□□□ 0.95
COL9A3-208ENST00000469802 TWISTNBQ3B726 338 aaPredicted RBP21■□□□□ 0.95
COL9A3-208ENST00000469802 CWC25Q9NXE8 425 aaPredicted RBP21■□□□□ 0.95
COL9A3-208ENST00000469802 SCN9AQ15858 1988 aa20.99■□□□□ 0.95
COL9A3-208ENST00000469802 LMOD1P29536 600 aaPredicted RBP20.99■□□□□ 0.95
COL9A3-208ENST00000469802 CXCL9Q07325 125 aa20.99■□□□□ 0.95
COL9A3-208ENST00000469802 KSR2Q6VAB6 950 aa20.99■□□□□ 0.95
COL9A3-208ENST00000469802 MAP3K2Q9Y2U5 619 aa20.99■□□□□ 0.95
COL9A3-208ENST00000469802 HSP90B1P14625 803 aaKnown RBP20.98■□□□□ 0.95
COL9A3-208ENST00000469802 EPS15P42566 896 aa20.98■□□□□ 0.95
COL9A3-208ENST00000469802 STK31Q9BXU1 1019 aa20.98■□□□□ 0.95
COL9A3-208ENST00000469802 CDHR2Q9BYE9 1310 aa20.98■□□□□ 0.95
COL9A3-208ENST00000469802 PI4KAP2A4QPH2 592 aa20.97■□□□□ 0.95
COL9A3-208ENST00000469802 IGKV5-2P06315 115 aa20.97■□□□□ 0.95
COL9A3-208ENST00000469802 WDR63Q8IWG1 891 aa20.97■□□□□ 0.95
COL9A3-208ENST00000469802 PI4KAP1Q8N8J0 262 aa20.97■□□□□ 0.95
COL9A3-208ENST00000469802 GPRC5DQ9NZD1 345 aa20.97■□□□□ 0.95
COL9A3-208ENST00000469802 YDJCA8MPS7 323 aa20.96■□□□□ 0.95
COL9A3-208ENST00000469802 PDE8AO60658 829 aa20.96■□□□□ 0.95
COL9A3-208ENST00000469802 RPS8P62241 208 aaKnown RBP20.96■□□□□ 0.95
COL9A3-208ENST00000469802 MAP1SQ66K74 1059 aaPredicted RBP20.96■□□□□ 0.95
COL9A3-208ENST00000469802 G2E3Q7L622 706 aa20.96■□□□□ 0.95
COL9A3-208ENST00000469802 CLEC11AQ9Y240 323 aa20.96■□□□□ 0.95
COL9A3-208ENST00000469802 CNTNAP1P78357 1384 aa20.96■□□□□ 0.95
COL9A3-208ENST00000469802 GPSM2P81274 684 aa20.95■□□□□ 0.94
COL9A3-208ENST00000469802 USP50Q70EL3 339 aaPredicted RBP20.95■□□□□ 0.94
COL9A3-208ENST00000469802 CNTROBQ8N137 903 aa20.95■□□□□ 0.94
COL9A3-208ENST00000469802 SEC31BQ9NQW1 1179 aa20.95■□□□□ 0.94
COL9A3-208ENST00000469802 NSFL1CQ9UNZ2 370 aaKnown RBP20.95■□□□□ 0.94
COL9A3-208ENST00000469802 THSD7BQ9C0I4 1608 aa20.94■□□□□ 0.94
COL9A3-208ENST00000469802 CCDC152Q4G0S7 254 aa20.94■□□□□ 0.94
COL9A3-208ENST00000469802 CIAPIN1Q6FI81 312 aa20.94■□□□□ 0.94
COL9A3-208ENST00000469802 POLLQ9UGP5 575 aa20.94■□□□□ 0.94
COL9A3-208ENST00000469802 ZNF646O15015 1829 aaPredicted RBP20.94■□□□□ 0.94
COL9A3-208ENST00000469802 TMEM88BA6NKF7 163 aa20.93■□□□□ 0.94
COL9A3-208ENST00000469802 SLC4A2P04920 1241 aa20.93■□□□□ 0.94
COL9A3-208ENST00000469802 GMPSP49915 693 aaPredicted RBP20.93■□□□□ 0.94
COL9A3-208ENST00000469802 IFFO2Q5TF58 517 aa20.93■□□□□ 0.94
COL9A3-208ENST00000469802 JARID2Q92833 1246 aaPredicted RBP20.93■□□□□ 0.94
COL9A3-208ENST00000469802 ADARB2Q9NS39 739 aaKnown RBP20.93■□□□□ 0.94
COL9A3-208ENST00000469802 PODXL2Q9NZ53 605 aa20.93■□□□□ 0.94
COL9A3-208ENST00000469802 A0A1B0GUL6 1792 aa20.92■□□□□ 0.94
COL9A3-208ENST00000469802 NEURL1BA8MQ27 555 aa20.92■□□□□ 0.94
COL9A3-208ENST00000469802 RAD17O75943 681 aa20.92■□□□□ 0.94
COL9A3-208ENST00000469802 NEXNQ0ZGT2 675 aa20.92■□□□□ 0.94
COL9A3-208ENST00000469802 FLIIQ13045 1269 aa20.92■□□□□ 0.94
COL9A3-208ENST00000469802 TNIP1Q15025 636 aa20.92■□□□□ 0.94
COL9A3-208ENST00000469802 WASHC4Q2M389 1173 aa20.92■□□□□ 0.94
COL9A3-208ENST00000469802 CWF19L2Q2TBE0 894 aaKnown RBP20.92■□□□□ 0.94
COL9A3-208ENST00000469802 TBC1D16Q8TBP0 767 aa20.92■□□□□ 0.94
COL9A3-208ENST00000469802 MKRN1Q9UHC7 482 aaKnown RBP20.92■□□□□ 0.94
COL9A3-208ENST00000469802 RTL9Q8NET4 1388 aa20.92■□□□□ 0.94
COL9A3-208ENST00000469802 VAMP4O75379 141 aa20.91■□□□□ 0.94
COL9A3-208ENST00000469802 CTSWP56202 376 aa20.91■□□□□ 0.94
COL9A3-208ENST00000469802 SPINK5Q9NQ38 1064 aaPredicted RBP20.9■□□□□ 0.94
COL9A3-208ENST00000469802 SALL2Q9Y467 1007 aaPredicted RBP20.9■□□□□ 0.94
COL9A3-208ENST00000469802 C6orf229H3BNL8 230 aa20.89■□□□□ 0.93
COL9A3-208ENST00000469802 EXOSC9Q06265 439 aaKnown RBP20.89■□□□□ 0.93
COL9A3-208ENST00000469802 EYA3Q99504 573 aa20.89■□□□□ 0.93
COL9A3-208ENST00000469802 DBNDD1Q9H9R9 158 aa20.89■□□□□ 0.93
COL9A3-208ENST00000469802 ZNF609O15014 1411 aa20.88■□□□□ 0.93
COL9A3-208ENST00000469802 H7C1W4 665 aa20.88■□□□□ 0.93
COL9A3-208ENST00000469802 ECE2O60344 883 aa20.88■□□□□ 0.93
COL9A3-208ENST00000469802 HSPA1AP0DMV8 641 aaKnown RBP20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 802.5 ms