RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 USP44Q9H0E7 712 aa15.08■□□□□ 0
VPS13D-204ENST00000469054 UTYO14607 1347 aa15.08■□□□□ 0
VPS13D-204ENST00000469054 N4BP2Q86UW6 1770 aaPredicted RBP15.07■□□□□ 0
VPS13D-204ENST00000469054 CCDC152Q4G0S7 254 aa15.07■□□□□ 0
VPS13D-204ENST00000469054 TTLL11Q8NHH1 800 aa15.07■□□□□ 0
VPS13D-204ENST00000469054 TNRC6CQ9HCJ0 1690 aaKnown RBP15.06■□□□□ 0
VPS13D-204ENST00000469054 C21orf2O43822 256 aa15.06■□□□□ 0
VPS13D-204ENST00000469054 FTSJ3Q8IY81 847 aaKnown RBP15.06■□□□□ 0
VPS13D-204ENST00000469054 DZIP1LQ8IYY4 767 aaKnown RBP15.06■□□□□ 0
VPS13D-204ENST00000469054 C7orf43Q8WVR3 580 aa15.06■□□□□ 0
VPS13D-204ENST00000469054 CCDC85AQ96PX6 553 aaPredicted RBP15.06■□□□□ 0
VPS13D-204ENST00000469054 BBOX1O75936 387 aa15.05■□□□□ -0
VPS13D-204ENST00000469054 CSF1RP07333 972 aa15.05■□□□□ -0
VPS13D-204ENST00000469054 FOXO4P98177 505 aa15.05■□□□□ -0
VPS13D-204ENST00000469054 GRAPQ13588 217 aa15.05■□□□□ -0
VPS13D-204ENST00000469054 TMEM57Q8N5G2 664 aa15.05■□□□□ -0
VPS13D-204ENST00000469054 GRAPLQ8TC17 118 aaPredicted RBP15.05■□□□□ -0
VPS13D-204ENST00000469054 SUCLG2Q96I99 432 aa15.05■□□□□ -0
VPS13D-204ENST00000469054 ZNF219Q9P2Y4 722 aaPredicted RBP15.05■□□□□ -0
VPS13D-204ENST00000469054 ZBTB22O15209 634 aa15.04■□□□□ -0
VPS13D-204ENST00000469054 PLIN1O60240 522 aa15.04■□□□□ -0
VPS13D-204ENST00000469054 MS4A1P11836 297 aa15.04■□□□□ -0
VPS13D-204ENST00000469054 RLBP1P12271 317 aa15.04■□□□□ -0
VPS13D-204ENST00000469054 EPHA10Q5JZY3 1008 aa15.04■□□□□ -0
VPS13D-204ENST00000469054 SOGA3Q5TF21 947 aa15.04■□□□□ -0
VPS13D-204ENST00000469054 ARHGAP27Q6ZUM4 889 aa15.04■□□□□ -0
VPS13D-204ENST00000469054 CELF1Q92879 486 aaKnown RBP15.04■□□□□ -0
VPS13D-204ENST00000469054 KAZALD1Q96I82 304 aa15.04■□□□□ -0
VPS13D-204ENST00000469054 GREM2Q9H772 168 aa15.04■□□□□ -0
VPS13D-204ENST00000469054 SEC31BQ9NQW1 1179 aa15.04■□□□□ -0
VPS13D-204ENST00000469054 PPEF1O14829 653 aaPredicted RBP15.03■□□□□ -0
VPS13D-204ENST00000469054 RPS8P62241 208 aaKnown RBP15.03■□□□□ -0
VPS13D-204ENST00000469054 CC2D2BQ6DHV5 1058 aa15.03■□□□□ -0
VPS13D-204ENST00000469054 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.03■□□□□ -0
VPS13D-204ENST00000469054 MEIS3Q99687 375 aa15.03■□□□□ -0
VPS13D-204ENST00000469054 COL11A2P13942 1736 aaPredicted RBP15.03■□□□□ -0
VPS13D-204ENST00000469054 RTL9Q8NET4 1388 aa15.02■□□□□ -0
VPS13D-204ENST00000469054 UBTFL1P0CB47 393 aaPredicted RBP15.02■□□□□ -0
VPS13D-204ENST00000469054 LMBR1LQ6UX01 489 aa15.02■□□□□ -0
VPS13D-204ENST00000469054 TMC4Q7Z404 712 aa15.02■□□□□ -0
VPS13D-204ENST00000469054 PANK1Q8TE04 598 aa15.02■□□□□ -0
VPS13D-204ENST00000469054 HDAC5Q9UQL6 1122 aa15.02■□□□□ -0
VPS13D-204ENST00000469054 ATP6V0A2Q9Y487 856 aa15.02■□□□□ -0
VPS13D-204ENST00000469054 U3KPZ7 1027 aaPredicted RBP15.02■□□□□ -0
VPS13D-204ENST00000469054 GNAI3P08754 354 aa15.01□□□□□ -0.01
VPS13D-204ENST00000469054 ITGA6P23229 1130 aa15.01□□□□□ -0.01
VPS13D-204ENST00000469054 FAM161AQ3B820 660 aa15.01□□□□□ -0.01
VPS13D-204ENST00000469054 RABL6Q3YEC7 729 aaPredicted RBP15.01□□□□□ -0.01
VPS13D-204ENST00000469054 CCDC93Q567U6 631 aa15.01□□□□□ -0.01
VPS13D-204ENST00000469054 OLFM4Q6UX06 510 aa15.01□□□□□ -0.01
VPS13D-204ENST00000469054 ITPRIPQ8IWB1 547 aa15.01□□□□□ -0.01
VPS13D-204ENST00000469054 SP8Q8IXZ3 490 aa15.01□□□□□ -0.01
VPS13D-204ENST00000469054 CDC5LQ99459 802 aaKnown RBP15.01□□□□□ -0.01
VPS13D-204ENST00000469054 TMX4Q9H1E5 349 aaPredicted RBP15.01□□□□□ -0.01
VPS13D-204ENST00000469054 BICC1Q9H694 974 aaKnown RBP15.01□□□□□ -0.01
VPS13D-204ENST00000469054 CHMP3Q9Y3E7 222 aa15.01□□□□□ -0.01
VPS13D-204ENST00000469054 DDX60Q8IY21 1712 aaKnown RBP15□□□□□ -0.01
VPS13D-204ENST00000469054 BRCA1P38398 1863 aaKnown RBP15□□□□□ -0.01
VPS13D-204ENST00000469054 IFIT5Q13325 482 aaKnown RBP15□□□□□ -0.01
VPS13D-204ENST00000469054 GRIPAP1Q4V328 841 aa15□□□□□ -0.01
VPS13D-204ENST00000469054 ANKRD18AQ8IVF6 992 aa15□□□□□ -0.01
VPS13D-204ENST00000469054 RTKN2Q8IZC4 609 aa15□□□□□ -0.01
VPS13D-204ENST00000469054 DLEC1Q9Y238 1755 aa15□□□□□ -0.01
VPS13D-204ENST00000469054 UTRNP46939 3433 aa14.99□□□□□ -0.01
VPS13D-204ENST00000469054 ANKRD18BA2A2Z9 1011 aa14.99□□□□□ -0.01
VPS13D-204ENST00000469054 NFKBIEO00221 500 aa14.99□□□□□ -0.01
VPS13D-204ENST00000469054 PDE3AQ14432 1141 aa14.99□□□□□ -0.01
VPS13D-204ENST00000469054 ANKRD44Q8N8A2 993 aa14.99□□□□□ -0.01
VPS13D-204ENST00000469054 LRRFIP2Q9Y608 721 aaKnown RBP14.99□□□□□ -0.01
VPS13D-204ENST00000469054 GOLGB1Q14789 3259 aaKnown RBP14.99□□□□□ -0.01
VPS13D-204ENST00000469054 SLX4Q8IY92 1834 aa14.99□□□□□ -0.01
VPS13D-204ENST00000469054 ZBTB7BO15156 539 aaPredicted RBP14.98□□□□□ -0.01
VPS13D-204ENST00000469054 IGHMBP2P38935 993 aaKnown RBP14.98□□□□□ -0.01
VPS13D-204ENST00000469054 CCDC57Q2TAC2 916 aa14.98□□□□□ -0.01
VPS13D-204ENST00000469054 SLC51AQ86UW1 340 aa14.98□□□□□ -0.01
VPS13D-204ENST00000469054 TAOK3Q9H2K8 898 aa14.98□□□□□ -0.01
VPS13D-204ENST00000469054 BSDC1Q9NW68 430 aaPredicted RBP14.98□□□□□ -0.01
VPS13D-204ENST00000469054 GNAI2P04899 355 aa14.97□□□□□ -0.01
VPS13D-204ENST00000469054 RRP1P56182 461 aaKnown RBP14.97□□□□□ -0.01
VPS13D-204ENST00000469054 FKBP4Q02790 459 aaKnown RBP eCLIP14.97□□□□□ -0.01
VPS13D-204ENST00000469054 RASSF7Q02833 373 aa14.97□□□□□ -0.01
VPS13D-204ENST00000469054 MVPQ14764 893 aaKnown RBP14.97□□□□□ -0.01
VPS13D-204ENST00000469054 C20orf194Q5TEA3 1177 aa14.97□□□□□ -0.01
VPS13D-204ENST00000469054 MPHOSPH8Q99549 860 aa14.97□□□□□ -0.01
VPS13D-204ENST00000469054 COG6Q9Y2V7 657 aa14.97□□□□□ -0.01
VPS13D-204ENST00000469054 LAMB2P55268 1798 aa14.97□□□□□ -0.01
VPS13D-204ENST00000469054 LTBP3Q9NS15 1303 aa14.96□□□□□ -0.01
VPS13D-204ENST00000469054 TAF7LQ5H9L4 462 aa14.96□□□□□ -0.01
VPS13D-204ENST00000469054 MPNDQ8N594 471 aa14.96□□□□□ -0.01
VPS13D-204ENST00000469054 PSMD1Q99460 953 aa14.96□□□□□ -0.01
VPS13D-204ENST00000469054 NSFL1CQ9UNZ2 370 aaKnown RBP14.96□□□□□ -0.01
VPS13D-204ENST00000469054 SNED1Q8TER0 1413 aa14.95□□□□□ -0.02
VPS13D-204ENST00000469054 LMNB1P20700 586 aa14.95□□□□□ -0.02
VPS13D-204ENST00000469054 PRELPP51888 382 aa14.95□□□□□ -0.02
VPS13D-204ENST00000469054 DPP8Q6V1X1 898 aaPredicted RBP14.95□□□□□ -0.02
VPS13D-204ENST00000469054 ZNF594Q96JF6 807 aaPredicted RBP14.95□□□□□ -0.02
VPS13D-204ENST00000469054 DDX19BQ9UMR2 479 aa14.95□□□□□ -0.02
VPS13D-204ENST00000469054 MINPP1Q9UNW1 487 aa14.95□□□□□ -0.02
VPS13D-204ENST00000469054 ARFGEF1Q9Y6D6 1849 aa14.94□□□□□ -0.02
VPS13D-204ENST00000469054 COL4A1P02462 1669 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms