RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SHISA2Q6UWI4 295 aa8.56□□□□□ -1.04
CCDC88A-210ENST00000468534 Q8N3U1 123 aa8.56□□□□□ -1.04
CCDC88A-210ENST00000468534 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.56□□□□□ -1.04
CCDC88A-210ENST00000468534 TTBK1Q5TCY1 1321 aaPredicted RBP8.55□□□□□ -1.04
CCDC88A-210ENST00000468534 ZBTB42B2RXF5 422 aa8.55□□□□□ -1.04
CCDC88A-210ENST00000468534 ELNP15502 786 aa8.55□□□□□ -1.04
CCDC88A-210ENST00000468534 HFE2Q6ZVN8 426 aa8.55□□□□□ -1.04
CCDC88A-210ENST00000468534 RGL4Q8IZJ4 473 aa8.55□□□□□ -1.04
CCDC88A-210ENST00000468534 MYO19Q96H55 970 aa8.55□□□□□ -1.04
CCDC88A-210ENST00000468534 TIMELESSQ9UNS1 1208 aa8.55□□□□□ -1.04
CCDC88A-210ENST00000468534 RTCBQ9Y3I0 505 aaKnown RBP8.55□□□□□ -1.04
CCDC88A-210ENST00000468534 C9orf172C9J069 976 aa8.54□□□□□ -1.04
CCDC88A-210ENST00000468534 SELPP16109 830 aa8.54□□□□□ -1.04
CCDC88A-210ENST00000468534 PCSK7Q16549 785 aa8.54□□□□□ -1.04
CCDC88A-210ENST00000468534 PERM1Q5SV97 790 aa8.54□□□□□ -1.04
CCDC88A-210ENST00000468534 ELMSAN1Q6PJG2 1045 aa8.54□□□□□ -1.04
CCDC88A-210ENST00000468534 TREML1Q86YW5 311 aa8.54□□□□□ -1.04
CCDC88A-210ENST00000468534 CMTR1Q8N1G2 835 aaKnown RBP8.54□□□□□ -1.04
CCDC88A-210ENST00000468534 LPIN3Q9BQK8 851 aa8.54□□□□□ -1.04
CCDC88A-210ENST00000468534 OPLAHO14841 1288 aa8.53□□□□□ -1.04
CCDC88A-210ENST00000468534 MAP3K6O95382 1288 aa8.53□□□□□ -1.04
CCDC88A-210ENST00000468534 PLAURQ03405 335 aa8.53□□□□□ -1.04
CCDC88A-210ENST00000468534 NKAPLQ5M9Q1 402 aa8.53□□□□□ -1.04
CCDC88A-210ENST00000468534 COX20Q5RI15 118 aa8.53□□□□□ -1.04
CCDC88A-210ENST00000468534 STK32AQ8WU08 396 aa8.53□□□□□ -1.04
CCDC88A-210ENST00000468534 MKNK1Q9BUB5 465 aa8.53□□□□□ -1.04
CCDC88A-210ENST00000468534 USP21Q9UK80 565 aa8.53□□□□□ -1.04
CCDC88A-210ENST00000468534 ZMIZ1Q9ULJ6 1067 aa8.53□□□□□ -1.04
CCDC88A-210ENST00000468534 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.52□□□□□ -1.05
CCDC88A-210ENST00000468534 XYLBO75191 536 aa8.52□□□□□ -1.05
CCDC88A-210ENST00000468534 EIF2AK2P19525 551 aaKnown RBP8.52□□□□□ -1.05
CCDC88A-210ENST00000468534 MBTPS1Q14703 1052 aa8.52□□□□□ -1.05
CCDC88A-210ENST00000468534 ZMYM1Q5SVZ6 1142 aa8.52□□□□□ -1.05
CCDC88A-210ENST00000468534 MSL1Q68DK7 614 aa8.52□□□□□ -1.05
CCDC88A-210ENST00000468534 FMR1NBQ8N0W7 255 aaPredicted RBP8.52□□□□□ -1.05
CCDC88A-210ENST00000468534 ACIN1Q9UKV3 1341 aaKnown RBP8.52□□□□□ -1.05
CCDC88A-210ENST00000468534 DYRK3O43781 588 aa8.51□□□□□ -1.05
CCDC88A-210ENST00000468534 GPLD1P80108 840 aa8.51□□□□□ -1.05
CCDC88A-210ENST00000468534 ADGRE1Q14246 886 aa8.51□□□□□ -1.05
CCDC88A-210ENST00000468534 TRPM4Q8TD43 1214 aa8.51□□□□□ -1.05
CCDC88A-210ENST00000468534 SMG9Q9H0W8 520 aaKnown RBP8.51□□□□□ -1.05
CCDC88A-210ENST00000468534 GRIK5Q16478 980 aa8.5□□□□□ -1.05
CCDC88A-210ENST00000468534 SWI5Q1ZZU3 235 aa8.5□□□□□ -1.05
CCDC88A-210ENST00000468534 TXNRD3Q86VQ6 643 aa8.5□□□□□ -1.05
CCDC88A-210ENST00000468534 LENG1Q96BZ8 264 aaPredicted RBP8.5□□□□□ -1.05
CCDC88A-210ENST00000468534 SAP130Q9H0E3 1048 aa8.5□□□□□ -1.05
CCDC88A-210ENST00000468534 FRRS1LQ9P0K9 344 aa8.5□□□□□ -1.05
CCDC88A-210ENST00000468534 ARID4AP29374 1257 aaPredicted RBP8.49□□□□□ -1.05
CCDC88A-210ENST00000468534 WFDC8Q8IUA0 241 aa8.49□□□□□ -1.05
CCDC88A-210ENST00000468534 NSUN5Q96P11 429 aaKnown RBP8.49□□□□□ -1.05
CCDC88A-210ENST00000468534 SCO2A0A1W2PP80 73 aa8.48□□□□□ -1.05
CCDC88A-210ENST00000468534 J3QW42 95 aa8.48□□□□□ -1.05
CCDC88A-210ENST00000468534 NRLP54845 237 aa8.48□□□□□ -1.05
CCDC88A-210ENST00000468534 NRG1Q02297 640 aaPredicted RBP8.48□□□□□ -1.05
CCDC88A-210ENST00000468534 NAA30Q147X3 362 aaPredicted RBP8.48□□□□□ -1.05
CCDC88A-210ENST00000468534 OCLNQ16625 522 aa8.48□□□□□ -1.05
CCDC88A-210ENST00000468534 CAPN12Q6ZSI9 719 aa8.48□□□□□ -1.05
CCDC88A-210ENST00000468534 ETFBKMTQ8IXQ9 262 aa8.48□□□□□ -1.05
CCDC88A-210ENST00000468534 TLR7Q9NYK1 1049 aaKnown RBP8.48□□□□□ -1.05
CCDC88A-210ENST00000468534 MMP20O60882 483 aa8.47□□□□□ -1.05
CCDC88A-210ENST00000468534 PSAPP07602 524 aa8.47□□□□□ -1.05
CCDC88A-210ENST00000468534 FAM69CQ0P6D2 419 aa8.47□□□□□ -1.05
CCDC88A-210ENST00000468534 C16orf46Q6P387 395 aa8.47□□□□□ -1.05
CCDC88A-210ENST00000468534 TP53INP1Q96A56 240 aa8.47□□□□□ -1.05
CCDC88A-210ENST00000468534 C11orf16Q9NQ32 467 aa8.47□□□□□ -1.05
CCDC88A-210ENST00000468534 KCNMB2Q9Y691 235 aa8.47□□□□□ -1.05
CCDC88A-210ENST00000468534 EGFRP00533 1210 aa8.46□□□□□ -1.06
CCDC88A-210ENST00000468534 BRD2P25440 801 aaKnown RBP8.46□□□□□ -1.06
CCDC88A-210ENST00000468534 ELOAQ14241 798 aaKnown RBP8.46□□□□□ -1.06
CCDC88A-210ENST00000468534 FAM26DQ5JW98 314 aa8.46□□□□□ -1.06
CCDC88A-210ENST00000468534 PRSS36Q5K4E3 855 aa8.46□□□□□ -1.06
CCDC88A-210ENST00000468534 GDF6Q6KF10 455 aaPredicted RBP8.46□□□□□ -1.06
CCDC88A-210ENST00000468534 GHRHP01286 108 aa8.45□□□□□ -1.06
CCDC88A-210ENST00000468534 TRIP4Q15650 581 aaPredicted RBP8.45□□□□□ -1.06
CCDC88A-210ENST00000468534 FOXD4L6Q3SYB3 417 aaPredicted RBP8.45□□□□□ -1.06
CCDC88A-210ENST00000468534 TMEM164Q5U3C3 297 aa8.45□□□□□ -1.06
CCDC88A-210ENST00000468534 FOXD4L3Q6VB84 417 aaPredicted RBP8.45□□□□□ -1.06
CCDC88A-210ENST00000468534 FBXO11Q86XK2 927 aa8.45□□□□□ -1.06
CCDC88A-210ENST00000468534 PLD4Q96BZ4 506 aa8.45□□□□□ -1.06
CCDC88A-210ENST00000468534 CXXC1Q9P0U4 656 aaPredicted RBP8.45□□□□□ -1.06
CCDC88A-210ENST00000468534 LOC102724428A0A0B4J2F2 783 aa8.44□□□□□ -1.06
CCDC88A-210ENST00000468534 SIK1P57059 783 aa8.44□□□□□ -1.06
CCDC88A-210ENST00000468534 ILDR2Q71H61 639 aa8.44□□□□□ -1.06
CCDC88A-210ENST00000468534 HOMEZQ8IX15 550 aa8.44□□□□□ -1.06
CCDC88A-210ENST00000468534 DTWD1Q8N5C7 304 aa8.44□□□□□ -1.06
CCDC88A-210ENST00000468534 DEAF1O75398 565 aaPredicted RBP8.43□□□□□ -1.06
CCDC88A-210ENST00000468534 IREB2P48200 963 aaKnown RBP8.43□□□□□ -1.06
CCDC88A-210ENST00000468534 TTC9Q92623 222 aa8.43□□□□□ -1.06
CCDC88A-210ENST00000468534 UBAP1LF5GYI3 381 aa8.42□□□□□ -1.06
CCDC88A-210ENST00000468534 TNFRSF10BO14763 440 aa8.42□□□□□ -1.06
CCDC88A-210ENST00000468534 ATG7O95352 703 aa8.42□□□□□ -1.06
CCDC88A-210ENST00000468534 SRPK2P78362 688 aaKnown RBP8.42□□□□□ -1.06
CCDC88A-210ENST00000468534 NLRP13Q86W25 1043 aa8.42□□□□□ -1.06
CCDC88A-210ENST00000468534 IL22RA1Q8N6P7 574 aa8.42□□□□□ -1.06
CCDC88A-210ENST00000468534 WFDC12Q8WWY7 111 aa8.42□□□□□ -1.06
CCDC88A-210ENST00000468534 RBSNQ9H1K0 784 aa8.42□□□□□ -1.06
CCDC88A-210ENST00000468534 PIK3R5Q8WYR1 880 aa8.41□□□□□ -1.06
CCDC88A-210ENST00000468534 COL26A1Q96A83 441 aa8.41□□□□□ -1.06
CCDC88A-210ENST00000468534 CCDC97Q96F63 343 aaPredicted RBP8.41□□□□□ -1.06
CCDC88A-210ENST00000468534 PTCD1O75127 700 aaKnown RBP8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms