RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 ABCC12Q96J65 1359 aa21.74■■□□□ 1.07
LIME1-202ENST00000444951 RGL2O15211 777 aa21.73■■□□□ 1.07
LIME1-202ENST00000444951 CCT4P50991 539 aaKnown RBP21.73■■□□□ 1.07
LIME1-202ENST00000444951 IFFO2Q5TF58 517 aa21.73■■□□□ 1.07
LIME1-202ENST00000444951 ITPRIPQ8IWB1 547 aa21.73■■□□□ 1.07
LIME1-202ENST00000444951 ISCA1Q9BUE6 129 aa21.73■■□□□ 1.07
LIME1-202ENST00000444951 NEURL1BA8MQ27 555 aa21.72■■□□□ 1.07
LIME1-202ENST00000444951 NPR1P16066 1061 aa21.72■■□□□ 1.07
LIME1-202ENST00000444951 RTL5Q5HYW3 569 aaPredicted RBP21.72■■□□□ 1.07
LIME1-202ENST00000444951 TPTE2Q6XPS3 522 aa21.72■■□□□ 1.07
LIME1-202ENST00000444951 NLRP10Q86W26 655 aa21.72■■□□□ 1.07
LIME1-202ENST00000444951 JARID2Q92833 1246 aaPredicted RBP21.72■■□□□ 1.07
LIME1-202ENST00000444951 CWC25Q9NXE8 425 aaPredicted RBP21.72■■□□□ 1.07
LIME1-202ENST00000444951 COG6Q9Y2V7 657 aa21.72■■□□□ 1.07
LIME1-202ENST00000444951 RNF123Q5XPI4 1314 aa21.72■■□□□ 1.07
LIME1-202ENST00000444951 SUSD4Q5VX71 490 aa21.71■■□□□ 1.07
LIME1-202ENST00000444951 KLRG1Q96E93 195 aa21.71■■□□□ 1.07
LIME1-202ENST00000444951 ALDH1L1O75891 902 aa21.7■■□□□ 1.06
LIME1-202ENST00000444951 PDE3AQ14432 1141 aa21.7■■□□□ 1.06
LIME1-202ENST00000444951 INTS3Q68E01 1043 aaKnown RBP21.7■■□□□ 1.06
LIME1-202ENST00000444951 NUTM1Q86Y26 1132 aa21.7■■□□□ 1.06
LIME1-202ENST00000444951 DDNO94850 711 aaPredicted RBP21.69■■□□□ 1.06
LIME1-202ENST00000444951 GCKRQ14397 625 aa21.69■■□□□ 1.06
LIME1-202ENST00000444951 PARP10Q53GL7 1025 aa21.69■■□□□ 1.06
LIME1-202ENST00000444951 DPY19L2Q6NUT2 758 aa21.69■■□□□ 1.06
LIME1-202ENST00000444951 SLC51AQ86UW1 340 aa21.69■■□□□ 1.06
LIME1-202ENST00000444951 CCDC191Q8NCU4 936 aa21.69■■□□□ 1.06
LIME1-202ENST00000444951 C9orf78Q9NZ63 289 aaPredicted RBP21.69■■□□□ 1.06
LIME1-202ENST00000444951 TRMT112Q9UI30 125 aaKnown RBP21.69■■□□□ 1.06
LIME1-202ENST00000444951 POTEIP0CG38 1075 aa21.68■■□□□ 1.06
LIME1-202ENST00000444951 POTEJP0CG39 1038 aa21.68■■□□□ 1.06
LIME1-202ENST00000444951 GTF2E1P29083 439 aaPredicted RBP21.68■■□□□ 1.06
LIME1-202ENST00000444951 TRIM28Q13263 835 aaKnown RBP21.68■■□□□ 1.06
LIME1-202ENST00000444951 CCDC93Q567U6 631 aa21.68■■□□□ 1.06
LIME1-202ENST00000444951 SOGA3Q5TF21 947 aa21.68■■□□□ 1.06
LIME1-202ENST00000444951 PPP1R42Q7Z4L9 355 aa21.68■■□□□ 1.06
LIME1-202ENST00000444951 UTP14AQ9BVJ6 771 aaKnown RBP21.68■■□□□ 1.06
LIME1-202ENST00000444951 FAM89AQ96GI7 184 aa21.67■■□□□ 1.06
LIME1-202ENST00000444951 ZNF277Q9NRM2 450 aaPredicted RBP21.67■■□□□ 1.06
LIME1-202ENST00000444951 SNED1Q8TER0 1413 aa21.66■■□□□ 1.06
LIME1-202ENST00000444951 MVPQ14764 893 aaKnown RBP21.66■■□□□ 1.06
LIME1-202ENST00000444951 UBE3BQ7Z3V4 1068 aa21.66■■□□□ 1.06
LIME1-202ENST00000444951 SYNE4Q8N205 404 aa21.66■■□□□ 1.06
LIME1-202ENST00000444951 CRBNQ96SW2 442 aa21.66■■□□□ 1.06
LIME1-202ENST00000444951 ZNF541Q9H0D2 1346 aa21.65■■□□□ 1.06
LIME1-202ENST00000444951 NTSR2O95665 410 aa21.65■■□□□ 1.06
LIME1-202ENST00000444951 FKBP4Q02790 459 aaKnown RBP eCLIP21.65■■□□□ 1.06
LIME1-202ENST00000444951 CRY2Q49AN0 593 aa21.65■■□□□ 1.06
LIME1-202ENST00000444951 JMYQ8N9B5 988 aa21.65■■□□□ 1.06
LIME1-202ENST00000444951 NYXQ9GZU5 481 aa21.65■■□□□ 1.06
LIME1-202ENST00000444951 GRM8O00222 908 aa21.64■■□□□ 1.05
LIME1-202ENST00000444951 MEIS3Q99687 375 aa21.64■■□□□ 1.05
LIME1-202ENST00000444951 PCCAP05165 728 aaPredicted RBP21.63■■□□□ 1.05
LIME1-202ENST00000444951 NBPF7P0C2Y1 421 aaPredicted RBP21.63■■□□□ 1.05
LIME1-202ENST00000444951 C3orf67Q6ZVT6 689 aa21.63■■□□□ 1.05
LIME1-202ENST00000444951 ZBTB38Q8NAP3 1195 aaPredicted RBP21.63■■□□□ 1.05
LIME1-202ENST00000444951 USP44Q9H0E7 712 aa21.63■■□□□ 1.05
LIME1-202ENST00000444951 SH3TC1Q8TE82 1336 aa21.62■■□□□ 1.05
LIME1-202ENST00000444951 HCLS1P14317 486 aaPredicted RBP21.62■■□□□ 1.05
LIME1-202ENST00000444951 COL4A5P29400 1685 aa21.62■■□□□ 1.05
LIME1-202ENST00000444951 RIC1Q4ADV7 1423 aa21.62■■□□□ 1.05
LIME1-202ENST00000444951 IBTKQ9P2D0 1353 aaPredicted RBP21.61■■□□□ 1.05
LIME1-202ENST00000444951 H7C1W4 665 aa21.61■■□□□ 1.05
LIME1-202ENST00000444951 NEFLP07196 543 aa21.61■■□□□ 1.05
LIME1-202ENST00000444951 UBTFL1P0CB47 393 aaPredicted RBP21.61■■□□□ 1.05
LIME1-202ENST00000444951 DDX19BQ9UMR2 479 aa21.61■■□□□ 1.05
LIME1-202ENST00000444951 IRS4O14654 1257 aaPredicted RBP21.6■■□□□ 1.05
LIME1-202ENST00000444951 ALDH1B1P30837 517 aa21.6■■□□□ 1.05
LIME1-202ENST00000444951 SCN4AP35499 1836 aa21.59■■□□□ 1.05
LIME1-202ENST00000444951 ZBTB7BO15156 539 aaPredicted RBP21.59■■□□□ 1.05
LIME1-202ENST00000444951 GNAI3P08754 354 aa21.59■■□□□ 1.05
LIME1-202ENST00000444951 CHADLQ6NUI6 762 aa21.59■■□□□ 1.05
LIME1-202ENST00000444951 RTKN2Q8IZC4 609 aa21.59■■□□□ 1.05
LIME1-202ENST00000444951 EXOC6Q8TAG9 804 aa21.59■■□□□ 1.05
LIME1-202ENST00000444951 L3MBTL3Q96JM7 780 aaPredicted RBP21.59■■□□□ 1.05
LIME1-202ENST00000444951 C1orf115Q9H7X2 142 aa21.59■■□□□ 1.05
LIME1-202ENST00000444951 HOXA10P31260 410 aaPredicted RBP21.58■■□□□ 1.05
LIME1-202ENST00000444951 IARSP41252 1262 aaKnown RBP21.58■■□□□ 1.05
LIME1-202ENST00000444951 CASP7P55210 303 aa21.58■■□□□ 1.05
LIME1-202ENST00000444951 SUCLG2Q96I99 432 aa21.58■■□□□ 1.05
LIME1-202ENST00000444951 TAF1DQ9H5J8 278 aaPredicted RBP21.58■■□□□ 1.05
LIME1-202ENST00000444951 LRRFIP2Q9Y608 721 aaKnown RBP21.57■■□□□ 1.04
LIME1-202ENST00000444951 UTYO14607 1347 aa21.56■■□□□ 1.04
LIME1-202ENST00000444951 RPGRQ92834 1020 aaKnown RBP21.56■■□□□ 1.04
LIME1-202ENST00000444951 CCDC85AQ96PX6 553 aaPredicted RBP21.56■■□□□ 1.04
LIME1-202ENST00000444951 CDHR2Q9BYE9 1310 aa21.55■■□□□ 1.04
LIME1-202ENST00000444951 FZD9O00144 591 aa21.55■■□□□ 1.04
LIME1-202ENST00000444951 GNAI2P04899 355 aa21.55■■□□□ 1.04
LIME1-202ENST00000444951 PSMD1Q99460 953 aa21.55■■□□□ 1.04
LIME1-202ENST00000444951 CHMP4BQ9H444 224 aaKnown RBP21.55■■□□□ 1.04
LIME1-202ENST00000444951 LAMB2P55268 1798 aa21.55■■□□□ 1.04
LIME1-202ENST00000444951 ADAMTSL1Q8N6G6 1762 aa21.55■■□□□ 1.04
LIME1-202ENST00000444951 EPHA10Q5JZY3 1008 aa21.54■■□□□ 1.04
LIME1-202ENST00000444951 BICC1Q9H694 974 aaKnown RBP21.54■■□□□ 1.04
LIME1-202ENST00000444951 CHMP3Q9Y3E7 222 aa21.54■■□□□ 1.04
LIME1-202ENST00000444951 DDX60Q8IY21 1712 aaKnown RBP21.54■■□□□ 1.04
LIME1-202ENST00000444951 LTBP1Q14766 1721 aa21.53■■□□□ 1.04
LIME1-202ENST00000444951 IQCA1LA6NCM1 817 aa21.53■■□□□ 1.04
LIME1-202ENST00000444951 PPEF1O14829 653 aaPredicted RBP21.53■■□□□ 1.04
LIME1-202ENST00000444951 PDE8AO60658 829 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 268.1 ms