RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 CWC22Q9HCG8 908 aaKnown RBP31.08■■■□□ 2.57
CPNE1-216ENST00000437340 COL5A3P25940 1745 aaPredicted RBP31.08■■■□□ 2.57
CPNE1-216ENST00000437340 ERVV-1B6SEH8 477 aa31.07■■■□□ 2.56
CPNE1-216ENST00000437340 CDHR2Q9BYE9 1310 aa31.07■■■□□ 2.56
CPNE1-216ENST00000437340 LOC102724428A0A0B4J2F2 783 aa31.07■■■□□ 2.56
CPNE1-216ENST00000437340 EYA2O00167 538 aa31.07■■■□□ 2.56
CPNE1-216ENST00000437340 SIK1P57059 783 aa31.07■■■□□ 2.56
CPNE1-216ENST00000437340 KRT27Q7Z3Y8 459 aa31.06■■■□□ 2.56
CPNE1-216ENST00000437340 RGS17Q9UGC6 210 aaPredicted RBP31.06■■■□□ 2.56
CPNE1-216ENST00000437340 FOXD4L1Q9NU39 408 aa31.05■■■□□ 2.56
CPNE1-216ENST00000437340 RFX7Q2KHR2 1363 aa31.05■■■□□ 2.56
CPNE1-216ENST00000437340 RREB1Q92766 1687 aa31.05■■■□□ 2.56
CPNE1-216ENST00000437340 CSF1RP07333 972 aa31.04■■■□□ 2.56
CPNE1-216ENST00000437340 ATP6V1AP38606 617 aa31.04■■■□□ 2.56
CPNE1-216ENST00000437340 GSE1Q14687 1217 aa31.04■■■□□ 2.56
CPNE1-216ENST00000437340 HLFQ16534 295 aa31.04■■■□□ 2.56
CPNE1-216ENST00000437340 NLRP10Q86W26 655 aa31.04■■■□□ 2.56
CPNE1-216ENST00000437340 FSD1Q9BTV5 496 aa31.04■■■□□ 2.56
CPNE1-216ENST00000437340 LY75O60449 1722 aa31.04■■■□□ 2.56
CPNE1-216ENST00000437340 CCDC57Q2TAC2 916 aa31.03■■■□□ 2.56
CPNE1-216ENST00000437340 ARXQ96QS3 562 aa31.03■■■□□ 2.56
CPNE1-216ENST00000437340 MYH14Q7Z406 1995 aaKnown RBP31.03■■■□□ 2.56
CPNE1-216ENST00000437340 TNPO1Q92973 898 aaKnown RBP31.02■■■□□ 2.56
CPNE1-216ENST00000437340 DBNDD2Q9BQY9 259 aa31.02■■■□□ 2.56
CPNE1-216ENST00000437340 ITPK1Q13572 414 aa31.02■■■□□ 2.56
CPNE1-216ENST00000437340 FAM89AQ96GI7 184 aa31.02■■■□□ 2.56
CPNE1-216ENST00000437340 SNX14Q9Y5W7 946 aa31.02■■■□□ 2.56
CPNE1-216ENST00000437340 DDX11L8A8MPP1 907 aa31.01■■■□□ 2.55
CPNE1-216ENST00000437340 NMIQ13287 307 aaPredicted RBP31.01■■■□□ 2.55
CPNE1-216ENST00000437340 TICAM2Q86XR7 235 aa31.01■■■□□ 2.55
CPNE1-216ENST00000437340 KCNB2Q92953 911 aa31.01■■■□□ 2.55
CPNE1-216ENST00000437340 HAUS7Q99871 368 aa31.01■■■□□ 2.55
CPNE1-216ENST00000437340 EP400Q96L91 3159 aa31.01■■■□□ 2.55
CPNE1-216ENST00000437340 ANKRD36CQ5JPF3 1778 aa31■■■□□ 2.55
CPNE1-216ENST00000437340 RXRBP28702 533 aa31■■■□□ 2.55
CPNE1-216ENST00000437340 NUCB2P80303 420 aa31■■■□□ 2.55
CPNE1-216ENST00000437340 DZIP3Q86Y13 1208 aaKnown RBP31■■■□□ 2.55
CPNE1-216ENST00000437340 GBP4Q96PP9 640 aa31■■■□□ 2.55
CPNE1-216ENST00000437340 CCDC171Q6TFL3 1326 aa31■■■□□ 2.55
CPNE1-216ENST00000437340 TMX3Q96JJ7 454 aa31■■■□□ 2.55
CPNE1-216ENST00000437340 EIF5P55010 431 aaKnown RBP30.99■■■□□ 2.55
CPNE1-216ENST00000437340 CUL4AQ13619 759 aa30.98■■■□□ 2.55
CPNE1-216ENST00000437340 LRRC24Q50LG9 513 aa30.98■■■□□ 2.55
CPNE1-216ENST00000437340 ZNF594Q96JF6 807 aaPredicted RBP30.98■■■□□ 2.55
CPNE1-216ENST00000437340 FAM227BQ96M60 508 aa30.98■■■□□ 2.55
CPNE1-216ENST00000437340 CCDC87Q9NVE4 849 aa30.98■■■□□ 2.55
CPNE1-216ENST00000437340 ZNF609O15014 1411 aa30.98■■■□□ 2.55
CPNE1-216ENST00000437340 PTH1RQ03431 593 aa30.97■■■□□ 2.55
CPNE1-216ENST00000437340 CLEC17AQ6ZS10 378 aa30.97■■■□□ 2.55
CPNE1-216ENST00000437340 FAM196AQ6ZSG2 479 aa30.97■■■□□ 2.55
CPNE1-216ENST00000437340 GPTP24298 496 aa30.97■■■□□ 2.55
CPNE1-216ENST00000437340 INTS5Q6P9B9 1019 aaKnown RBP30.97■■■□□ 2.55
CPNE1-216ENST00000437340 POTEAQ6S8J7 498 aa30.97■■■□□ 2.55
CPNE1-216ENST00000437340 MED23Q9ULK4 1368 aa30.97■■■□□ 2.55
CPNE1-216ENST00000437340 MAP4K1Q92918 833 aa30.96■■■□□ 2.55
CPNE1-216ENST00000437340 CEP126Q9P2H0 1117 aa30.96■■■□□ 2.55
CPNE1-216ENST00000437340 TAF1LQ8IZX4 1826 aa30.96■■■□□ 2.55
CPNE1-216ENST00000437340 IFIT5Q13325 482 aaKnown RBP30.95■■■□□ 2.55
CPNE1-216ENST00000437340 ZNF34Q8IZ26 560 aa30.95■■■□□ 2.55
CPNE1-216ENST00000437340 RASEFQ8IZ41 740 aa30.95■■■□□ 2.55
CPNE1-216ENST00000437340 INTS4Q96HW7 963 aaKnown RBP30.95■■■□□ 2.55
CPNE1-216ENST00000437340 UPF3BQ9BZI7 483 aaKnown RBP30.95■■■□□ 2.55
CPNE1-216ENST00000437340 BCL11BQ9C0K0 894 aaPredicted RBP30.95■■■□□ 2.55
CPNE1-216ENST00000437340 CRKLP46109 303 aaKnown RBP30.94■■■□□ 2.54
CPNE1-216ENST00000437340 NEUROD6Q96NK8 337 aa30.94■■■□□ 2.54
CPNE1-216ENST00000437340 NUP98P52948 1817 aa30.94■■■□□ 2.54
CPNE1-216ENST00000437340 A0A0D9SFI3 127 aa30.94■■■□□ 2.54
CPNE1-216ENST00000437340 PTMSP20962 102 aa30.94■■■□□ 2.54
CPNE1-216ENST00000437340 NECTIN1Q15223 517 aa30.94■■■□□ 2.54
CPNE1-216ENST00000437340 PUS3Q9BZE2 481 aaKnown RBP30.94■■■□□ 2.54
CPNE1-216ENST00000437340 TM6SF1Q9BZW5 370 aa30.94■■■□□ 2.54
CPNE1-216ENST00000437340 TBC1D2BQ9UPU7 963 aa30.94■■■□□ 2.54
CPNE1-216ENST00000437340 AKAP2Q9Y2D5 859 aa30.94■■■□□ 2.54
CPNE1-216ENST00000437340 KCNQ4P56696 695 aa30.93■■■□□ 2.54
CPNE1-216ENST00000437340 PPIL4Q8WUA2 492 aaKnown RBP eCLIP30.93■■■□□ 2.54
CPNE1-216ENST00000437340 CYP2E1P05181 493 aaPredicted RBP30.92■■■□□ 2.54
CPNE1-216ENST00000437340 TIMM10P62072 90 aa30.92■■■□□ 2.54
CPNE1-216ENST00000437340 TRMT112Q9UI30 125 aaKnown RBP30.92■■■□□ 2.54
CPNE1-216ENST00000437340 A0A1B0GUL7 405 aa30.92■■■□□ 2.54
CPNE1-216ENST00000437340 TAF7LQ5H9L4 462 aa30.92■■■□□ 2.54
CPNE1-216ENST00000437340 LINC00116Q8NCU8 138 aa30.92■■■□□ 2.54
CPNE1-216ENST00000437340 TTLL11Q8NHH1 800 aa30.92■■■□□ 2.54
CPNE1-216ENST00000437340 AK7Q96M32 723 aa30.92■■■□□ 2.54
CPNE1-216ENST00000437340 TTC14Q96N46 770 aa30.92■■■□□ 2.54
CPNE1-216ENST00000437340 ZKSCAN1P17029 563 aaPredicted RBP30.91■■■□□ 2.54
CPNE1-216ENST00000437340 CTSWP56202 376 aa30.91■■■□□ 2.54
CPNE1-216ENST00000437340 ZGPATQ8N5A5 531 aaKnown RBP30.91■■■□□ 2.54
CPNE1-216ENST00000437340 KBTBD3Q8NAB2 608 aa30.91■■■□□ 2.54
CPNE1-216ENST00000437340 EDC3Q96F86 508 aaKnown RBP30.91■■■□□ 2.54
CPNE1-216ENST00000437340 RBM8AQ9Y5S9 174 aaKnown RBP30.91■■■□□ 2.54
CPNE1-216ENST00000437340 IRS4O14654 1257 aaPredicted RBP30.9■■■□□ 2.54
CPNE1-216ENST00000437340 SSFA2P28290 1259 aa30.9■■■□□ 2.54
CPNE1-216ENST00000437340 PRPF40BQ6NWY9 871 aaKnown RBP30.9■■■□□ 2.54
CPNE1-216ENST00000437340 DNAJC2Q99543 621 aaKnown RBP30.9■■■□□ 2.54
CPNE1-216ENST00000437340 PDE8AO60658 829 aa30.89■■■□□ 2.54
CPNE1-216ENST00000437340 UBN2Q6ZU65 1347 aa30.88■■■□□ 2.53
CPNE1-216ENST00000437340 TRIM37O94972 964 aa30.88■■■□□ 2.53
CPNE1-216ENST00000437340 KCNJ4P48050 445 aa30.87■■■□□ 2.53
CPNE1-216ENST00000437340 RNF20Q5VTR2 975 aa30.87■■■□□ 2.53
CPNE1-216ENST00000437340 CREB3L3Q68CJ9 461 aa30.87■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms