RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 KIAA2012Q0VF49 1180 aa14.94□□□□□ -0.02
SQSTM1-203ENST00000422245 SF3B3Q15393 1217 aaKnown RBP14.94□□□□□ -0.02
SQSTM1-203ENST00000422245 FAM89AQ96GI7 184 aa14.94□□□□□ -0.02
SQSTM1-203ENST00000422245 ZNRF3Q9ULT6 936 aa14.94□□□□□ -0.02
SQSTM1-203ENST00000422245 CNTNAP1P78357 1384 aa14.94□□□□□ -0.02
SQSTM1-203ENST00000422245 TMEM88BA6NKF7 163 aa14.93□□□□□ -0.02
SQSTM1-203ENST00000422245 HSP90B1P14625 803 aaKnown RBP14.93□□□□□ -0.02
SQSTM1-203ENST00000422245 ZEB1P37275 1124 aaPredicted RBP14.93□□□□□ -0.02
SQSTM1-203ENST00000422245 RIC3Q7Z5B4 369 aa14.93□□□□□ -0.02
SQSTM1-203ENST00000422245 TAF1P21675 1872 aa14.93□□□□□ -0.02
SQSTM1-203ENST00000422245 CDHR2Q9BYE9 1310 aa14.92□□□□□ -0.02
SQSTM1-203ENST00000422245 ELL2O00472 640 aaPredicted RBP14.92□□□□□ -0.02
SQSTM1-203ENST00000422245 IRS4O14654 1257 aaPredicted RBP14.92□□□□□ -0.02
SQSTM1-203ENST00000422245 HSPA1AP0DMV8 641 aaKnown RBP14.92□□□□□ -0.02
SQSTM1-203ENST00000422245 HSPA1BP0DMV9 641 aaKnown RBP14.92□□□□□ -0.02
SQSTM1-203ENST00000422245 CCDC27Q2M243 656 aa14.92□□□□□ -0.02
SQSTM1-203ENST00000422245 CCDC30Q5VVM6 783 aa14.92□□□□□ -0.02
SQSTM1-203ENST00000422245 MAP1SQ66K74 1059 aaPredicted RBP14.92□□□□□ -0.02
SQSTM1-203ENST00000422245 CNTROBQ8N137 903 aa14.92□□□□□ -0.02
SQSTM1-203ENST00000422245 MKRN1Q9UHC7 482 aaKnown RBP14.92□□□□□ -0.02
SQSTM1-203ENST00000422245 DUOX1Q9NRD9 1551 aa14.92□□□□□ -0.02
SQSTM1-203ENST00000422245 DDX58O95786 925 aaKnown RBP14.91□□□□□ -0.02
SQSTM1-203ENST00000422245 EPS15P42566 896 aa14.91□□□□□ -0.02
SQSTM1-203ENST00000422245 CXCL9Q07325 125 aa14.91□□□□□ -0.02
SQSTM1-203ENST00000422245 USP50Q70EL3 339 aaPredicted RBP14.91□□□□□ -0.02
SQSTM1-203ENST00000422245 ZBTB38Q8NAP3 1195 aaPredicted RBP14.91□□□□□ -0.02
SQSTM1-203ENST00000422245 C8orf58Q8NAV2 365 aa14.91□□□□□ -0.02
SQSTM1-203ENST00000422245 ZNF428Q96B54 188 aa14.91□□□□□ -0.02
SQSTM1-203ENST00000422245 PHAXQ9H814 394 aaKnown RBP14.91□□□□□ -0.02
SQSTM1-203ENST00000422245 CIAPIN1Q6FI81 312 aa14.9□□□□□ -0.02
SQSTM1-203ENST00000422245 CCDC191Q8NCU4 936 aa14.9□□□□□ -0.02
SQSTM1-203ENST00000422245 CELF1Q92879 486 aaKnown RBP14.9□□□□□ -0.02
SQSTM1-203ENST00000422245 ADARB2Q9NS39 739 aaKnown RBP14.9□□□□□ -0.02
SQSTM1-203ENST00000422245 GPRC5DQ9NZD1 345 aa14.9□□□□□ -0.02
SQSTM1-203ENST00000422245 PCNTO95613 3336 aa14.89□□□□□ -0.03
SQSTM1-203ENST00000422245 TNIP1Q15025 636 aa14.89□□□□□ -0.03
SQSTM1-203ENST00000422245 NCBP3Q53F19 620 aaKnown RBP14.89□□□□□ -0.03
SQSTM1-203ENST00000422245 RTL5Q5HYW3 569 aaPredicted RBP14.89□□□□□ -0.03
SQSTM1-203ENST00000422245 MYD88Q99836 296 aa14.89□□□□□ -0.03
SQSTM1-203ENST00000422245 PCCAP05165 728 aaPredicted RBP14.88□□□□□ -0.03
SQSTM1-203ENST00000422245 GMPSP49915 693 aaPredicted RBP14.88□□□□□ -0.03
SQSTM1-203ENST00000422245 CCDC184Q52MB2 194 aa14.88□□□□□ -0.03
SQSTM1-203ENST00000422245 COL13A1Q5TAT6 717 aaPredicted RBP14.88□□□□□ -0.03
SQSTM1-203ENST00000422245 TSR2Q969E8 191 aaKnown RBP14.88□□□□□ -0.03
SQSTM1-203ENST00000422245 METTL22Q9BUU2 404 aaPredicted RBP14.88□□□□□ -0.03
SQSTM1-203ENST00000422245 STK31Q9BXU1 1019 aa14.88□□□□□ -0.03
SQSTM1-203ENST00000422245 CWC25Q9NXE8 425 aaPredicted RBP14.88□□□□□ -0.03
SQSTM1-203ENST00000422245 NSFL1CQ9UNZ2 370 aaKnown RBP14.88□□□□□ -0.03
SQSTM1-203ENST00000422245 IL16Q14005 1332 aa14.88□□□□□ -0.03
SQSTM1-203ENST00000422245 TRPM7Q96QT4 1865 aa14.87□□□□□ -0.03
SQSTM1-203ENST00000422245 RASSF10A6NK89 507 aa14.87□□□□□ -0.03
SQSTM1-203ENST00000422245 WASHC4Q2M389 1173 aa14.87□□□□□ -0.03
SQSTM1-203ENST00000422245 CCDC152Q4G0S7 254 aa14.87□□□□□ -0.03
SQSTM1-203ENST00000422245 WWC1Q8IX03 1113 aa14.87□□□□□ -0.03
SQSTM1-203ENST00000422245 TSPYL6Q8N831 410 aa14.87□□□□□ -0.03
SQSTM1-203ENST00000422245 EYA3Q99504 573 aa14.87□□□□□ -0.03
SQSTM1-203ENST00000422245 BCL2L13Q9BXK5 485 aa14.87□□□□□ -0.03
SQSTM1-203ENST00000422245 MRS2Q9HD23 443 aa14.87□□□□□ -0.03
SQSTM1-203ENST00000422245 RAD17O75943 681 aa14.86□□□□□ -0.03
SQSTM1-203ENST00000422245 VEGFBP49765 207 aa14.86□□□□□ -0.03
SQSTM1-203ENST00000422245 RPS8P62241 208 aaKnown RBP14.86□□□□□ -0.03
SQSTM1-203ENST00000422245 GPSM2P81274 684 aa14.86□□□□□ -0.03
SQSTM1-203ENST00000422245 ABT1Q9ULW3 272 aaKnown RBP14.86□□□□□ -0.03
SQSTM1-203ENST00000422245 COL4A1P02462 1669 aa14.85□□□□□ -0.03
SQSTM1-203ENST00000422245 YDJCA8MPS7 323 aa14.85□□□□□ -0.03
SQSTM1-203ENST00000422245 C6orf229H3BNL8 230 aa14.85□□□□□ -0.03
SQSTM1-203ENST00000422245 ANP32CO43423 234 aa14.85□□□□□ -0.03
SQSTM1-203ENST00000422245 PDE8AO60658 829 aa14.85□□□□□ -0.03
SQSTM1-203ENST00000422245 TWISTNBQ3B726 338 aaPredicted RBP14.85□□□□□ -0.03
SQSTM1-203ENST00000422245 KSR2Q6VAB6 950 aa14.85□□□□□ -0.03
SQSTM1-203ENST00000422245 MAP3K2Q9Y2U5 619 aa14.85□□□□□ -0.03
SQSTM1-203ENST00000422245 NEXNQ0ZGT2 675 aa14.84□□□□□ -0.03
SQSTM1-203ENST00000422245 DEFB115Q30KQ5 88 aa14.84□□□□□ -0.03
SQSTM1-203ENST00000422245 TNS4Q8IZW8 715 aa14.84□□□□□ -0.03
SQSTM1-203ENST00000422245 TBC1D16Q8TBP0 767 aa14.84□□□□□ -0.03
SQSTM1-203ENST00000422245 ZC3H15Q8WU90 426 aaKnown RBP14.84□□□□□ -0.03
SQSTM1-203ENST00000422245 PODXL2Q9NZ53 605 aa14.84□□□□□ -0.03
SQSTM1-203ENST00000422245 POLLQ9UGP5 575 aa14.84□□□□□ -0.03
SQSTM1-203ENST00000422245 THSD7BQ9C0I4 1608 aa14.84□□□□□ -0.03
SQSTM1-203ENST00000422245 PI4KAP2A4QPH2 592 aa14.83□□□□□ -0.04
SQSTM1-203ENST00000422245 ECE2O60344 883 aa14.83□□□□□ -0.04
SQSTM1-203ENST00000422245 PI4KAP1Q8N8J0 262 aa14.83□□□□□ -0.04
SQSTM1-203ENST00000422245 DPF2Q92785 391 aa14.83□□□□□ -0.04
SQSTM1-203ENST00000422245 AIDAQ96BJ3 306 aa14.83□□□□□ -0.04
SQSTM1-203ENST00000422245 DBNDD1Q9H9R9 158 aa14.83□□□□□ -0.04
SQSTM1-203ENST00000422245 SEC31BQ9NQW1 1179 aa14.83□□□□□ -0.04
SQSTM1-203ENST00000422245 MYH3P11055 1940 aa14.83□□□□□ -0.04
SQSTM1-203ENST00000422245 ZNF316A6NFI3 1004 aaPredicted RBP14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 H7C1D1 291 aa14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 TRAF5O00463 557 aa14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 PSMD14O00487 310 aa14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 RIMBP2O15034 1052 aa14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 UFL1O94874 794 aa14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 IGKV5-2P06315 115 aa14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 RPS12P25398 132 aaKnown RBP14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 CTSWP56202 376 aa14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 ANKRD18AQ8IVF6 992 aa14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 MICALL2Q8IY33 904 aa14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 TRPM4Q8TD43 1214 aa14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 ANKIB1Q9P2G1 1089 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms