RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 CC2D2BQ6DHV5 1058 aa29.15■■■□□ 2.26
SMARCB1-205ENST00000417137 ATF7IPQ6VMQ6 1270 aa29.15■■■□□ 2.26
SMARCB1-205ENST00000417137 GRAPLQ8TC17 118 aaPredicted RBP29.15■■■□□ 2.26
SMARCB1-205ENST00000417137 C7orf43Q8WVR3 580 aa29.15■■■□□ 2.26
SMARCB1-205ENST00000417137 ABCC4O15439 1325 aa29.15■■■□□ 2.26
SMARCB1-205ENST00000417137 PPEF1O14829 653 aaPredicted RBP29.13■■■□□ 2.25
SMARCB1-205ENST00000417137 GRIPAP1Q4V328 841 aa29.13■■■□□ 2.25
SMARCB1-205ENST00000417137 CCDC93Q567U6 631 aa29.13■■■□□ 2.25
SMARCB1-205ENST00000417137 TMC4Q7Z404 712 aa29.13■■■□□ 2.25
SMARCB1-205ENST00000417137 RTKN2Q8IZC4 609 aa29.13■■■□□ 2.25
SMARCB1-205ENST00000417137 TTLL11Q8NHH1 800 aa29.12■■■□□ 2.25
SMARCB1-205ENST00000417137 RCAN3Q9UKA8 241 aa29.12■■■□□ 2.25
SMARCB1-205ENST00000417137 ARFGEF1Q9Y6D6 1849 aa29.12■■■□□ 2.25
SMARCB1-205ENST00000417137 TRIM27P14373 513 aa29.11■■■□□ 2.25
SMARCB1-205ENST00000417137 ATP6V0A2Q9Y487 856 aa29.1■■■□□ 2.25
SMARCB1-205ENST00000417137 DDX60Q8IY21 1712 aaKnown RBP29.1■■■□□ 2.25
SMARCB1-205ENST00000417137 UTYO14607 1347 aa29.1■■■□□ 2.25
SMARCB1-205ENST00000417137 SLX4Q8IY92 1834 aa29.09■■■□□ 2.25
SMARCB1-205ENST00000417137 RPS8P62241 208 aaKnown RBP29.09■■■□□ 2.25
SMARCB1-205ENST00000417137 INTS3Q68E01 1043 aaKnown RBP29.09■■■□□ 2.25
SMARCB1-205ENST00000417137 SP8Q8IXZ3 490 aa29.09■■■□□ 2.25
SMARCB1-205ENST00000417137 CCDC85AQ96PX6 553 aaPredicted RBP29.09■■■□□ 2.25
SMARCB1-205ENST00000417137 CSF1RP07333 972 aa29.08■■■□□ 2.25
SMARCB1-205ENST00000417137 NBPF7P0C2Y1 421 aaPredicted RBP29.08■■■□□ 2.25
SMARCB1-205ENST00000417137 CDC5LQ99459 802 aaKnown RBP29.08■■■□□ 2.25
SMARCB1-205ENST00000417137 USP44Q9H0E7 712 aa29.08■■■□□ 2.25
SMARCB1-205ENST00000417137 HDAC5Q9UQL6 1122 aa29.08■■■□□ 2.25
SMARCB1-205ENST00000417137 CELF1Q92879 486 aaKnown RBP29.07■■■□□ 2.24
SMARCB1-205ENST00000417137 TAOK3Q9H2K8 898 aa29.07■■■□□ 2.24
SMARCB1-205ENST00000417137 SEC31BQ9NQW1 1179 aa29.07■■■□□ 2.24
SMARCB1-205ENST00000417137 LAMB2P55268 1798 aa29.06■■■□□ 2.24
SMARCB1-205ENST00000417137 RTL9Q8NET4 1388 aa29.06■■■□□ 2.24
SMARCB1-205ENST00000417137 CLUAP1Q96AJ1 413 aa29.06■■■□□ 2.24
SMARCB1-205ENST00000417137 LTBP3Q9NS15 1303 aa29.05■■■□□ 2.24
SMARCB1-205ENST00000417137 NFKBIEO00221 500 aa29.05■■■□□ 2.24
SMARCB1-205ENST00000417137 FOXO4P98177 505 aa29.05■■■□□ 2.24
SMARCB1-205ENST00000417137 ANKRD18AQ8IVF6 992 aa29.05■■■□□ 2.24
SMARCB1-205ENST00000417137 FTSJ3Q8IY81 847 aaKnown RBP29.05■■■□□ 2.24
SMARCB1-205ENST00000417137 GREM2Q9H772 168 aa29.05■■■□□ 2.24
SMARCB1-205ENST00000417137 GOLGB1Q14789 3259 aaKnown RBP29.04■■■□□ 2.24
SMARCB1-205ENST00000417137 MS4A1P11836 297 aa29.04■■■□□ 2.24
SMARCB1-205ENST00000417137 LMNB1P20700 586 aa29.04■■■□□ 2.24
SMARCB1-205ENST00000417137 OLFM4Q6UX06 510 aa29.04■■■□□ 2.24
SMARCB1-205ENST00000417137 FKBP4Q02790 459 aaKnown RBP eCLIP29.03■■■□□ 2.24
SMARCB1-205ENST00000417137 RASSF7Q02833 373 aa29.03■■■□□ 2.24
SMARCB1-205ENST00000417137 LMBR1LQ6UX01 489 aa29.03■■■□□ 2.24
SMARCB1-205ENST00000417137 DZIP1LQ8IYY4 767 aaKnown RBP29.03■■■□□ 2.24
SMARCB1-205ENST00000417137 SUCLG2Q96I99 432 aa29.03■■■□□ 2.24
SMARCB1-205ENST00000417137 CHMP3Q9Y3E7 222 aa29.03■■■□□ 2.24
SMARCB1-205ENST00000417137 UBTFL1P0CB47 393 aaPredicted RBP29.02■■■□□ 2.24
SMARCB1-205ENST00000417137 ITGA6P23229 1130 aa29.02■■■□□ 2.24
SMARCB1-205ENST00000417137 C9orf131Q5VYM1 1079 aa29.02■■■□□ 2.24
SMARCB1-205ENST00000417137 PSMD1Q99460 953 aa29.02■■■□□ 2.24
SMARCB1-205ENST00000417137 ANKRD18BA2A2Z9 1011 aa29.01■■■□□ 2.23
SMARCB1-205ENST00000417137 IFIT5Q13325 482 aaKnown RBP29.01■■■□□ 2.23
SMARCB1-205ENST00000417137 RNF181Q9P0P0 153 aa29.01■■■□□ 2.23
SMARCB1-205ENST00000417137 GNAI3P08754 354 aa29■■■□□ 2.23
SMARCB1-205ENST00000417137 IGHMBP2P38935 993 aaKnown RBP29■■■□□ 2.23
SMARCB1-205ENST00000417137 CCDC57Q2TAC2 916 aa29■■■□□ 2.23
SMARCB1-205ENST00000417137 FAM161AQ3B820 660 aa29■■■□□ 2.23
SMARCB1-205ENST00000417137 EPHA10Q5JZY3 1008 aa29■■■□□ 2.23
SMARCB1-205ENST00000417137 MPNDQ8N594 471 aa29■■■□□ 2.23
SMARCB1-205ENST00000417137 GOLGA6L2Q8N9W4 650 aaPredicted RBP29■■■□□ 2.23
SMARCB1-205ENST00000417137 TNNQ9UQP3 1299 aa29■■■□□ 2.23
SMARCB1-205ENST00000417137 DPP8Q6V1X1 898 aaPredicted RBP28.99■■■□□ 2.23
SMARCB1-205ENST00000417137 SUPT20HQ8NEM7 779 aa28.99■■■□□ 2.23
SMARCB1-205ENST00000417137 CACNA1SQ13698 1873 aa28.99■■■□□ 2.23
SMARCB1-205ENST00000417137 TMEM57Q8N5G2 664 aa28.98■■■□□ 2.23
SMARCB1-205ENST00000417137 KAZALD1Q96I82 304 aa28.98■■■□□ 2.23
SMARCB1-205ENST00000417137 BICC1Q9H694 974 aaKnown RBP28.98■■■□□ 2.23
SMARCB1-205ENST00000417137 BSDC1Q9NW68 430 aaPredicted RBP28.98■■■□□ 2.23
SMARCB1-205ENST00000417137 MPHOSPH8Q99549 860 aa28.97■■■□□ 2.23
SMARCB1-205ENST00000417137 RABL6Q3YEC7 729 aaPredicted RBP28.96■■■□□ 2.23
SMARCB1-205ENST00000417137 TAF7LQ5H9L4 462 aa28.96■■■□□ 2.23
SMARCB1-205ENST00000417137 NSFL1CQ9UNZ2 370 aaKnown RBP28.96■■■□□ 2.23
SMARCB1-205ENST00000417137 MEIS3Q99687 375 aa28.95■■■□□ 2.22
SMARCB1-205ENST00000417137 VPS33BQ9H267 617 aa28.95■■■□□ 2.22
SMARCB1-205ENST00000417137 ZNF277Q9NRM2 450 aaPredicted RBP28.95■■■□□ 2.22
SMARCB1-205ENST00000417137 RTFDC1Q9BY42 306 aaPredicted RBP28.94■■■□□ 2.22
SMARCB1-205ENST00000417137 MYH3P11055 1940 aa28.94■■■□□ 2.22
SMARCB1-205ENST00000417137 IARSP41252 1262 aaKnown RBP28.93■■■□□ 2.22
SMARCB1-205ENST00000417137 PRELPP51888 382 aa28.93■■■□□ 2.22
SMARCB1-205ENST00000417137 ITPRIPQ8IWB1 547 aa28.93■■■□□ 2.22
SMARCB1-205ENST00000417137 ANKRD44Q8N8A2 993 aa28.93■■■□□ 2.22
SMARCB1-205ENST00000417137 ANKIB1Q9P2G1 1089 aa28.93■■■□□ 2.22
SMARCB1-205ENST00000417137 FER1L6Q2WGJ9 1857 aa28.93■■■□□ 2.22
SMARCB1-205ENST00000417137 SNED1Q8TER0 1413 aa28.93■■■□□ 2.22
SMARCB1-205ENST00000417137 ZC3H4Q9UPT8 1303 aaKnown RBP28.93■■■□□ 2.22
SMARCB1-205ENST00000417137 RLBP1P12271 317 aa28.91■■■□□ 2.22
SMARCB1-205ENST00000417137 GPSM2P81274 684 aa28.91■■■□□ 2.22
SMARCB1-205ENST00000417137 SLC51AQ86UW1 340 aa28.91■■■□□ 2.22
SMARCB1-205ENST00000417137 PODXL2Q9NZ53 605 aa28.91■■■□□ 2.22
SMARCB1-205ENST00000417137 MINPP1Q9UNW1 487 aa28.91■■■□□ 2.22
SMARCB1-205ENST00000417137 LRRFIP2Q9Y608 721 aaKnown RBP28.91■■■□□ 2.22
SMARCB1-205ENST00000417137 JDP2Q8WYK2 163 aa28.9■■■□□ 2.22
SMARCB1-205ENST00000417137 TAF1P21675 1872 aa28.89■■■□□ 2.22
SMARCB1-205ENST00000417137 C6orf229H3BNL8 230 aa28.89■■■□□ 2.22
SMARCB1-205ENST00000417137 PLIN1O60240 522 aa28.89■■■□□ 2.22
SMARCB1-205ENST00000417137 GNAI2P04899 355 aa28.89■■■□□ 2.22
SMARCB1-205ENST00000417137 LDHAL6AQ6ZMR3 332 aa28.89■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms