RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 LRMPQ12912 555 aa11.61□□□□□ -0.55
CD44-206ENST00000415148 PDIA6Q15084 440 aa11.61□□□□□ -0.55
CD44-206ENST00000415148 ESCO1Q5FWF5 840 aa11.61□□□□□ -0.55
CD44-206ENST00000415148 CDC37L1Q7L3B6 337 aa11.61□□□□□ -0.55
CD44-206ENST00000415148 LUZP1Q86V48 1076 aa11.61□□□□□ -0.55
CD44-206ENST00000415148 FSD1Q9BTV5 496 aa11.61□□□□□ -0.55
CD44-206ENST00000415148 NRBP1Q9UHY1 535 aa11.61□□□□□ -0.55
CD44-206ENST00000415148 MAP3K11Q16584 847 aa11.61□□□□□ -0.55
CD44-206ENST00000415148 ANKLE2Q86XL3 938 aa11.61□□□□□ -0.55
CD44-206ENST00000415148 TICAM2Q86XR7 235 aa11.61□□□□□ -0.55
CD44-206ENST00000415148 ANKRD24Q8TF21 1146 aa11.61□□□□□ -0.55
CD44-206ENST00000415148 BCL11BQ9C0K0 894 aaPredicted RBP11.61□□□□□ -0.55
CD44-206ENST00000415148 CCDC8Q9H0W5 538 aaPredicted RBP11.61□□□□□ -0.55
CD44-206ENST00000415148 NUP62CLQ9H1M0 184 aa11.61□□□□□ -0.55
CD44-206ENST00000415148 KIF3AQ9Y496 699 aa11.61□□□□□ -0.55
CD44-206ENST00000415148 COL15A1P39059 1388 aa11.6□□□□□ -0.55
CD44-206ENST00000415148 ATP5JP18859 108 aa11.6□□□□□ -0.55
CD44-206ENST00000415148 RIC3Q7Z5B4 369 aa11.6□□□□□ -0.55
CD44-206ENST00000415148 CKAP2LQ8IYA6 745 aa11.6□□□□□ -0.55
CD44-206ENST00000415148 FAM200AQ8TCP9 573 aa11.6□□□□□ -0.55
CD44-206ENST00000415148 DDX19AQ9NUU7 478 aaKnown RBP11.6□□□□□ -0.55
CD44-206ENST00000415148 MRVI1Q9Y6F6 885 aa11.6□□□□□ -0.55
CD44-206ENST00000415148 NPHP3Q7Z494 1330 aa11.6□□□□□ -0.55
CD44-206ENST00000415148 SETD1BQ9UPS6 1966 aaKnown RBP11.6□□□□□ -0.55
CD44-206ENST00000415148 A0A0D9SFI3 127 aa11.6□□□□□ -0.55
CD44-206ENST00000415148 IGKV5-2P06315 115 aa11.6□□□□□ -0.55
CD44-206ENST00000415148 TOB2Q14106 344 aaPredicted RBP11.6□□□□□ -0.55
CD44-206ENST00000415148 RBM43Q6ZSC3 357 aaKnown RBP11.6□□□□□ -0.55
CD44-206ENST00000415148 BOLA2Q9H3K6 86 aa11.6□□□□□ -0.55
CD44-206ENST00000415148 COPRSQ9NQ92 184 aa11.6□□□□□ -0.55
CD44-206ENST00000415148 NEURL1BA8MQ27 555 aa11.59□□□□□ -0.55
CD44-206ENST00000415148 IGSF3O75054 1194 aa11.59□□□□□ -0.55
CD44-206ENST00000415148 TAF5LO75529 589 aa11.59□□□□□ -0.55
CD44-206ENST00000415148 U2AF2P26368 475 aaKnown RBP eCLIP11.59□□□□□ -0.55
CD44-206ENST00000415148 GCKRQ14397 625 aa11.59□□□□□ -0.55
CD44-206ENST00000415148 NAA30Q147X3 362 aaPredicted RBP11.59□□□□□ -0.55
CD44-206ENST00000415148 METTL22Q9BUU2 404 aaPredicted RBP11.59□□□□□ -0.55
CD44-206ENST00000415148 CAVIN2O95810 425 aa11.59□□□□□ -0.55
CD44-206ENST00000415148 DMTNQ08495 405 aa11.59□□□□□ -0.55
CD44-206ENST00000415148 TFIP11Q9UBB9 837 aaKnown RBP11.59□□□□□ -0.55
CD44-206ENST00000415148 PRAMEF22A3QJZ6 481 aa11.58□□□□□ -0.56
CD44-206ENST00000415148 GOLGA6L4A6NEF3 574 aa11.58□□□□□ -0.56
CD44-206ENST00000415148 TYRO3Q06418 890 aa11.58□□□□□ -0.56
CD44-206ENST00000415148 ZNF790Q6PG37 636 aa11.58□□□□□ -0.56
CD44-206ENST00000415148 SPATA32Q96LK8 384 aa11.58□□□□□ -0.56
CD44-206ENST00000415148 ZSCAN16Q9H4T2 348 aaPredicted RBP11.58□□□□□ -0.56
CD44-206ENST00000415148 PLEKHG2Q9H7P9 1386 aa11.58□□□□□ -0.56
CD44-206ENST00000415148 MST1RQ04912 1400 aa11.58□□□□□ -0.56
CD44-206ENST00000415148 TNMDQ9H2S6 317 aa11.57□□□□□ -0.56
CD44-206ENST00000415148 TLR7Q9NYK1 1049 aaKnown RBP11.57□□□□□ -0.56
CD44-206ENST00000415148 U3KPZ7 1027 aaPredicted RBP11.57□□□□□ -0.56
CD44-206ENST00000415148 AIMP1Q12904 312 aaKnown RBP11.57□□□□□ -0.56
CD44-206ENST00000415148 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.57□□□□□ -0.56
CD44-206ENST00000415148 LEO1Q8WVC0 666 aaPredicted RBP11.57□□□□□ -0.56
CD44-206ENST00000415148 NEK1Q96PY6 1258 aa11.57□□□□□ -0.56
CD44-206ENST00000415148 CLSTN2Q9H4D0 955 aa11.57□□□□□ -0.56
CD44-206ENST00000415148 SCN11AQ9UI33 1791 aa11.56□□□□□ -0.56
CD44-206ENST00000415148 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.56□□□□□ -0.56
CD44-206ENST00000415148 CHGBP05060 677 aa11.56□□□□□ -0.56
CD44-206ENST00000415148 CCDC186Q7Z3E2 898 aa11.56□□□□□ -0.56
CD44-206ENST00000415148 GTF3C6Q969F1 213 aa11.56□□□□□ -0.56
CD44-206ENST00000415148 LLPHQ9BRT6 129 aaKnown RBP11.56□□□□□ -0.56
CD44-206ENST00000415148 SLC52A2Q9HAB3 445 aa11.56□□□□□ -0.56
CD44-206ENST00000415148 CBX8Q9HC52 389 aa11.56□□□□□ -0.56
CD44-206ENST00000415148 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.56□□□□□ -0.56
CD44-206ENST00000415148 CFAP45Q9UL16 551 aa11.56□□□□□ -0.56
CD44-206ENST00000415148 ABCC6O95255 1503 aa11.56□□□□□ -0.56
CD44-206ENST00000415148 A0A087WWV3 80 aa11.56□□□□□ -0.56
CD44-206ENST00000415148 HMGB1P09429 215 aaKnown RBP11.56□□□□□ -0.56
CD44-206ENST00000415148 RFX5P48382 616 aaPredicted RBP11.56□□□□□ -0.56
CD44-206ENST00000415148 CHAF1AQ13111 956 aaPredicted RBP11.56□□□□□ -0.56
CD44-206ENST00000415148 STK3Q13188 491 aa11.56□□□□□ -0.56
CD44-206ENST00000415148 RABL6Q3YEC7 729 aaPredicted RBP11.56□□□□□ -0.56
CD44-206ENST00000415148 ANO6Q4KMQ2 910 aa11.56□□□□□ -0.56
CD44-206ENST00000415148 TNNI3KQ59H18 835 aa11.56□□□□□ -0.56
CD44-206ENST00000415148 ZNF589Q86UQ0 364 aaPredicted RBP11.56□□□□□ -0.56
CD44-206ENST00000415148 SIL1Q9H173 461 aa11.56□□□□□ -0.56
CD44-206ENST00000415148 DACT1Q9NYF0 836 aa11.56□□□□□ -0.56
CD44-206ENST00000415148 FPGT-TNNI3KV9GXZ4 949 aa11.56□□□□□ -0.56
CD44-206ENST00000415148 ZNF142P52746 1687 aaPredicted RBP11.56□□□□□ -0.56
CD44-206ENST00000415148 TRPM3Q9HCF6 1732 aaPredicted RBP11.55□□□□□ -0.56
CD44-206ENST00000415148 ANKRD13DQ6ZTN6 518 aa11.55□□□□□ -0.56
CD44-206ENST00000415148 PDCL2Q8N4E4 241 aa11.55□□□□□ -0.56
CD44-206ENST00000415148 ANKRD7Q92527 254 aa11.55□□□□□ -0.56
CD44-206ENST00000415148 C5P01031 1676 aa11.55□□□□□ -0.56
CD44-206ENST00000415148 PTPN12Q05209 780 aaKnown RBP11.55□□□□□ -0.56
CD44-206ENST00000415148 ARID5BQ14865 1188 aa11.55□□□□□ -0.56
CD44-206ENST00000415148 CCDC144BQ3MJ40 725 aa11.55□□□□□ -0.56
CD44-206ENST00000415148 MCMDC2Q4G0Z9 681 aa11.55□□□□□ -0.56
CD44-206ENST00000415148 ATL3Q6DD88 541 aa11.55□□□□□ -0.56
CD44-206ENST00000415148 COPS6Q7L5N1 327 aa11.55□□□□□ -0.56
CD44-206ENST00000415148 CCDC144CPQ8IYA2 1237 aa11.55□□□□□ -0.56
CD44-206ENST00000415148 TDRD7Q8NHU6 1098 aaKnown RBP11.55□□□□□ -0.56
CD44-206ENST00000415148 XAGE3Q8WTP9 111 aa11.55□□□□□ -0.56
CD44-206ENST00000415148 CHMP4CQ96CF2 233 aa11.55□□□□□ -0.56
CD44-206ENST00000415148 EDC3Q96F86 508 aaKnown RBP11.55□□□□□ -0.56
CD44-206ENST00000415148 PGBD1Q96JS3 809 aa11.55□□□□□ -0.56
CD44-206ENST00000415148 C16orf45Q96MC5 204 aaPredicted RBP11.55□□□□□ -0.56
CD44-206ENST00000415148 HAUS7Q99871 368 aa11.55□□□□□ -0.56
CD44-206ENST00000415148 RESTQ13127 1097 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms