RNA–Protein interactions for RNA: ENST00000397004.8

NUP98-204, Transcript of nucleoporin 98, humanhuman

TSL 1 (best) BASIC

Gene NUP98, Length 3,923 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98-204ENST00000397004 ZNF530Q6P9A1 599 aaPredicted RBP16.56■□□□□ 0.24
NUP98-204ENST00000397004 UTYO14607 1347 aa16.55■□□□□ 0.24
NUP98-204ENST00000397004 RNMTO43148 476 aaKnown RBP16.55■□□□□ 0.24
NUP98-204ENST00000397004 KRT85P78386 507 aa16.55■□□□□ 0.24
NUP98-204ENST00000397004 SEC62Q99442 399 aaKnown RBP16.55■□□□□ 0.24
NUP98-204ENST00000397004 TAF5LO75529 589 aa16.55■□□□□ 0.24
NUP98-204ENST00000397004 GRM8O00222 908 aa16.55■□□□□ 0.24
NUP98-204ENST00000397004 A0A0G2JLW4 131 aa16.54■□□□□ 0.24
NUP98-204ENST00000397004 U2AF2P26368 475 aaKnown RBP eCLIP16.54■□□□□ 0.242e-7■■■■□ 22.1
NUP98-204ENST00000397004 ADD1P35611 737 aaKnown RBP16.54■□□□□ 0.24
NUP98-204ENST00000397004 CCDC129Q6ZRS4 1044 aa16.54■□□□□ 0.24
NUP98-204ENST00000397004 ZKSCAN1P17029 563 aaPredicted RBP16.54■□□□□ 0.24
NUP98-204ENST00000397004 AIMP1Q12904 312 aaKnown RBP16.54■□□□□ 0.24
NUP98-204ENST00000397004 ALDH1L1O75891 902 aa16.54■□□□□ 0.24
NUP98-204ENST00000397004 AKAP4Q5JQC9 854 aa16.54■□□□□ 0.24
NUP98-204ENST00000397004 CACTINQ8WUQ7 758 aaKnown RBP16.54■□□□□ 0.24
NUP98-204ENST00000397004 DNAJC25Q9H1X3 360 aa16.54■□□□□ 0.24
NUP98-204ENST00000397004 TEFQ10587 303 aa16.53■□□□□ 0.24
NUP98-204ENST00000397004 ZNF75DP51815 510 aa16.53■□□□□ 0.24
NUP98-204ENST00000397004 DMTNQ08495 405 aa16.53■□□□□ 0.24
NUP98-204ENST00000397004 NCBP1Q09161 790 aaKnown RBP16.53■□□□□ 0.24
NUP98-204ENST00000397004 RESTQ13127 1097 aa16.53■□□□□ 0.24
NUP98-204ENST00000397004 ZSCAN25Q6NSZ9 544 aa16.53■□□□□ 0.24
NUP98-204ENST00000397004 BLOC1S2Q6QNY1 142 aa16.53■□□□□ 0.24
NUP98-204ENST00000397004 LRRC2Q9BYS8 371 aa16.53■□□□□ 0.24
NUP98-204ENST00000397004 PPFIA3O75145 1194 aa16.52■□□□□ 0.24
NUP98-204ENST00000397004 SPATA32Q96LK8 384 aa16.52■□□□□ 0.24
NUP98-204ENST00000397004 TNMDQ9H2S6 317 aa16.52■□□□□ 0.24
NUP98-204ENST00000397004 CLSTN2Q9H4D0 955 aa16.52■□□□□ 0.24
NUP98-204ENST00000397004 KCNJ4P48050 445 aa16.52■□□□□ 0.24
NUP98-204ENST00000397004 C16orf45Q96MC5 204 aaPredicted RBP16.52■□□□□ 0.24
NUP98-204ENST00000397004 AXIN2Q9Y2T1 843 aa16.52■□□□□ 0.24
NUP98-204ENST00000397004 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.52■□□□□ 0.23
NUP98-204ENST00000397004 USP27XA6NNY8 438 aa16.52■□□□□ 0.23
NUP98-204ENST00000397004 USPL1Q5W0Q7 1092 aa16.52■□□□□ 0.23
NUP98-204ENST00000397004 C11orf57Q6ZUT1 292 aaPredicted RBP16.52■□□□□ 0.23
NUP98-204ENST00000397004 STOX1Q6ZVD7 989 aa16.52■□□□□ 0.23
NUP98-204ENST00000397004 FSD1Q9BTV5 496 aa16.51■□□□□ 0.23
NUP98-204ENST00000397004 ALDH8A1Q9H2A2 487 aaPredicted RBP16.51■□□□□ 0.23
NUP98-204ENST00000397004 DBNLQ9UJU6 430 aaKnown RBP16.51■□□□□ 0.23
NUP98-204ENST00000397004 ZNF609O15014 1411 aa16.51■□□□□ 0.23
NUP98-204ENST00000397004 PIP4K2AP48426 406 aaPredicted RBP16.51■□□□□ 0.23
NUP98-204ENST00000397004 TSGA10IPQ3SY00 556 aa16.51■□□□□ 0.23
NUP98-204ENST00000397004 BCL11BQ9C0K0 894 aaPredicted RBP16.51■□□□□ 0.23
NUP98-204ENST00000397004 SIPA1L3O60292 1781 aaPredicted RBP16.51■□□□□ 0.23
NUP98-204ENST00000397004 MRC1P22897 1456 aa16.51■□□□□ 0.23
NUP98-204ENST00000397004 LINS1Q8NG48 757 aa16.51■□□□□ 0.23
NUP98-204ENST00000397004 TDRD7Q8NHU6 1098 aaKnown RBP16.51■□□□□ 0.23
NUP98-204ENST00000397004 GOLPH3LQ9H4A5 285 aa16.51■□□□□ 0.23
NUP98-204ENST00000397004 IQCB1Q15051 598 aa16.51■□□□□ 0.23
NUP98-204ENST00000397004 ADGRL3Q9HAR2 1447 aa16.5■□□□□ 0.23
NUP98-204ENST00000397004 CTDNEP1O95476 244 aa16.5■□□□□ 0.23
NUP98-204ENST00000397004 SLC39A6Q13433 755 aa16.5■□□□□ 0.23
NUP98-204ENST00000397004 BRF1Q92994 677 aa16.5■□□□□ 0.23
NUP98-204ENST00000397004 STRCP1A6NGW2 1772 aa16.5■□□□□ 0.23
NUP98-204ENST00000397004 CYP21A2P08686 494 aa16.5■□□□□ 0.23
NUP98-204ENST00000397004 ERCC4Q92889 916 aaPredicted RBP16.5■□□□□ 0.23
NUP98-204ENST00000397004 GTF3C6Q969F1 213 aa16.5■□□□□ 0.23
NUP98-204ENST00000397004 SCRN1Q12765 414 aa16.5■□□□□ 0.23
NUP98-204ENST00000397004 ERC1Q8IUD2 1116 aa16.5■□□□□ 0.23
NUP98-204ENST00000397004 KLHL34Q8N239 644 aa16.5■□□□□ 0.23
NUP98-204ENST00000397004 PHF8Q9UPP1 1060 aa16.5■□□□□ 0.23
NUP98-204ENST00000397004 NPHP3Q7Z494 1330 aa16.5■□□□□ 0.23
NUP98-204ENST00000397004 C5P01031 1676 aa16.49■□□□□ 0.23
NUP98-204ENST00000397004 IGSF3O75054 1194 aa16.49■□□□□ 0.23
NUP98-204ENST00000397004 RFX5P48382 616 aaPredicted RBP16.49■□□□□ 0.23
NUP98-204ENST00000397004 CEBPZQ03701 1054 aaKnown RBP16.49■□□□□ 0.23
NUP98-204ENST00000397004 ZNF165P49910 485 aa16.49■□□□□ 0.23
NUP98-204ENST00000397004 LRP10Q7Z4F1 713 aa16.49■□□□□ 0.23
NUP98-204ENST00000397004 PDCL2Q8N4E4 241 aa16.49■□□□□ 0.23
NUP98-204ENST00000397004 NCAPD2Q15021 1401 aa16.48■□□□□ 0.23
NUP98-204ENST00000397004 PSMA5P28066 241 aa16.48■□□□□ 0.23
NUP98-204ENST00000397004 G3BP1Q13283 466 aaKnown RBP eCLIP16.48■□□□□ 0.233e-6■■□□□ 14.2
NUP98-204ENST00000397004 SNW1Q13573 536 aaKnown RBP16.48■□□□□ 0.23
NUP98-204ENST00000397004 ILDR1Q86SU0 546 aaPredicted RBP16.48■□□□□ 0.23
NUP98-204ENST00000397004 GPATCH3Q96I76 525 aa16.48■□□□□ 0.23
NUP98-204ENST00000397004 SCAND2PQ9GZW5 306 aaPredicted RBP16.48■□□□□ 0.23
NUP98-204ENST00000397004 Q6ZUG5 572 aa16.48■□□□□ 0.23
NUP98-204ENST00000397004 TRIM5Q9C035 493 aa16.48■□□□□ 0.23
NUP98-204ENST00000397004 NEURL1BA8MQ27 555 aa16.47■□□□□ 0.23
NUP98-204ENST00000397004 LAMA4Q16363 1823 aa16.47■□□□□ 0.23
NUP98-204ENST00000397004 FOSBP53539 338 aa16.47■□□□□ 0.23
NUP98-204ENST00000397004 MYL6BP14649 208 aa16.46■□□□□ 0.23
NUP98-204ENST00000397004 PTPN12Q05209 780 aaKnown RBP16.46■□□□□ 0.23
NUP98-204ENST00000397004 TFCP2Q12800 502 aa16.46■□□□□ 0.23
NUP98-204ENST00000397004 DDX21Q9NR30 783 aaKnown RBP eCLIP16.46■□□□□ 0.23
NUP98-204ENST00000397004 PDCP20941 246 aa16.46■□□□□ 0.22
NUP98-204ENST00000397004 GCKRQ14397 625 aa16.46■□□□□ 0.22
NUP98-204ENST00000397004 DDX19AQ9NUU7 478 aaKnown RBP16.46■□□□□ 0.22
NUP98-204ENST00000397004 UTP14CQ5TAP6 766 aaKnown RBP16.45■□□□□ 0.22
NUP98-204ENST00000397004 NEK1Q96PY6 1258 aa16.45■□□□□ 0.22
NUP98-204ENST00000397004 PHRF1Q9P1Y6 1649 aaKnown RBP16.45■□□□□ 0.22
NUP98-204ENST00000397004 PLEKHO1Q53GL0 409 aaPredicted RBP16.45■□□□□ 0.22
NUP98-204ENST00000397004 SMARCC2Q8TAQ2 1214 aa16.45■□□□□ 0.22
NUP98-204ENST00000397004 DBNDD2Q9BQY9 259 aa16.45■□□□□ 0.22
NUP98-204ENST00000397004 CLIP2Q9UDT6 1046 aa16.45■□□□□ 0.22
NUP98-204ENST00000397004 ERBB3P21860 1342 aa16.45■□□□□ 0.22
NUP98-204ENST00000397004 ARHGEF25Q86VW2 580 aa16.44■□□□□ 0.22
NUP98-204ENST00000397004 DHX40Q8IX18 779 aaKnown RBP16.44■□□□□ 0.22
NUP98-204ENST00000397004 BICD2Q8TD16 824 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms